Quantitative analysis of vitamin D using m/MALDI-TOF mass spectrometry based on a parylene matrix chip

Vitamin D deficiency is associated with various disorders and is diagnosed based on the concentration of 25-hydroxy vitamin D3 (25(OH)D3) in serum. The parylene matrix chip was fabricated to reduce the matrix background noise, and the homogenous distribution of the matrix was retained for the quantitative analysis of 25(OH)D3. The Amplex Red assay was performed to confirm that the sample-matrix mixing zone of the parylene matrix chip was formed below the surface of the parylene-N film. The homogeneous distribution of the matrix was verified from the fluorescence image. For effective analysis using a parylene matrix chip, 25(OH)D3 was modified through the nucleophilic addition of betaine aldehyde (BA) to form a hemiacetal salt. Such modified 25(OH)D3 with a positive charge from BA could be effectively analyzed using MALDI-TOF mass spectrometry. Serum 25(OH)D3 was extracted by liquid–liquid extraction (LLE) and quantified using MALDI-TOF mass spectrometry based on the parylene matrix chip. The intensity of the mass peak of 25(OH)D3 was linearly correlated (r2 = 0.992) with the concentration of 25(OH)D3 spiked in serum, and the LOD was 0.0056 pmol/μL. Energy drinks and vitamin D3 tablets were also employed for the real sample analysis. Finally, the results of the chemiluminescence binding assay and MALDI-TOF mass spectrometry were statistically analyzed to determine the applicability of the method using the Bland–Altman test and Passing–Bablok regression.

Toxic metal concentrations and Cu–Zn–Pb isotopic compositions in tires

Background Particles from non-exhaust emissions derived from traffic activities are a dominant cause of toxic metal pollution in urban environments. Recently, studies applying multiple isotope values using the Iso-source and positive matrix factorization (PMF) models have begun to be used as useful tools to evaluate the contribution of each pollution source in urban environments. However, data on the metal concentrations and isotopic compositions of each potential source are lacking. Therefore, this study presents data on toxic metals and Cu, Zn, and Pb isotopic compositions in tires, which are one of the important non-exhaust emission sources. Findings Among the toxic metals, Zn had the highest concentration in all tire samples, and the mean concentrations were in the order of Zn > Cu > Pb > Sn > Sb > Ni > Cr > As > Cd. Ni, Zn, Sn, and Sb had higher concentrations in domestic tires (South Korea), and the Cu, Cd, and Pb concentrations were relatively higher in imported tires. The mean values of δ65CuAE647, δ66ZnIRMM3702, and 206Pb/207Pb ranged from − 1.04 to − 0.22‰, − 0.09 to − 0.03‰, and 1.1242 to 1.1747, respectively. The concentrations and isotopic compositions of Cu and Pb in the tires showed large differences depending on the product and manufacturer. However, the differences in Zn concentration and δ66ZnIRMM3702 values were very small compared with those of Cu and Pb. The relationships of the Zn concentration and isotopic composition showed that domestic tires are clearly distinguishable from imported tires. Bi-plots of Cu, Zn, and Pb isotopic compositions indicated that tires can be clearly discriminated from natural-origin and other non-exhaust traffic emission sources. Conclusions The multi-isotope signatures of Cu, Zn, and Pb exhibited different isotopic values for other non-exhaust traffic emission sources than for tires, and application of the multi-isotope technique may be a powerful method for distinguishing and managing non-exhaust sources of metal contamination in urban environments.

Structural stability of Cutibacterium acnes acyl carrier protein studied using CD and NMR spectroscopy

To survive in diverse environments, bacteria adapt by changing the composition of their cell membrane fatty acids. Compared with aerobic bacteria, Cutibacterium acnes has much greater contents of branched-chain fatty acids (BCFAs) in the cell membrane, which helps it survive in anaerobic environments. To synthesize BCFAs, C. acnes acyl carrier protein (CaACP) has to transfer growing branched acyl intermediates from its hydrophobic cavity to fatty acid synthases. CaACP contains an unconserved, distinctive Cys50 in its hydrophobic pocket, which corresponds to Leu in other bacterial acyl carrier proteins (ACPs). Herein, we investigated the substrate specificity of CaACP and the importance of Cys50 in its structural stability. We mutated Cys50 to Leu (C50L mutant) and measured the melting temperatures (Tms) of both CaACP and the C50L mutant by performing circular dichroism experiments. The Tm of CaACP was very low (49.6 °C), whereas that of C50L mutant was 55.5 °C. Hydrogen/deuterium exchange experiments revealed that wild-type CaACP showed extremely fast exchange rates within 50 min, whereas amide peaks of the C50L mutant in the heteronuclear single quantum coherence spectrum remained up to 200 min, thereby implying that Cys50 is the key residue contributing to the structural stability of CaACP. We also monitored chemical shift perturbations upon apo to holo, apo to butyryl, and apo to isobutyryl conversion, confirming that CaACP can accommodate isobutyryl BCFAs. These results provide a preliminary understanding into the substrate specificity of CaACPs for the production of BCFAs necessary to maintain cell membrane fluidity under anaerobic environments.

Fabrication of In(III)-alizarin red S complex trap for efficient detection of fluoride ion in aqueous environs

The work discusses about the synthesis of indium-alizarin red S complex followed by its application toward the sensing of F¯ ion. At first, the interaction between indium and alizarin red S dye was studied at three different pH medium, pH 4, 7 and 9, of which pH 7 gave the best result. The indium-alizarin red S complex so obtained was then utilized for the ratiometric sensing of fluoride ion using absorption spectroscopy with variation of temperature. The lowest limit of detection (0.040 mM) was obtained at 313 K. The mechanism for the sensing of F¯ ion was then investigated using isothermal titration calorimetry. The endothermic nature of the interaction between F¯ ion with indium-alizarin red S complex shows temperature dependence on the sensing experiment. At the end, the utility of the technique toward natural sample was also examined. The present work reports a simple, rapid and efficient detection of fluoride anion in environmental water samples.

Graphene oxide modified screen-printed electrode for highly sensitive and selective electrochemical detection of ciprofloxacin residues in milk

The monitoring of antibiotic residues in foodstuffs by using rapid detection method is essential for food safety. In this work, the electrochemical sensor was developed by modification of screen-printed carbon electrode with graphene oxide, and then the ciprofloxacin (CIP) was detected based on the complexation of CIP with Mn2+. On modified electrode, the anodic stripping peak current response of Mn2+ was prohibited in the presence of CIP, and a peak current response of the complex was occurred. Thus, the peak current response of the complexation peak was employed as the indicating signal for CIP determination, which was more sensitive than the direct electrochemical oxidation response of CIP. Parameters that affect the signal response have been investigated in method. Under the optimum conditions, the peak current of the complexation peak was linearly correlated with the CIP content in the milk sample solution at 1.0 to 8.0 μM, and the linear correlation coefficients (R2) was 0.994. The limits of detection (LOD) was 0.30 μM. Recoveries of CIP in milk sample were ranged from 81.0 to 95.4% with relative standard deviations (RSDs) below 4.6%. The method showed high selectivity and sensitive, good reproducibility, indicated that this method has potential to be applied in CIP residue analysis.

Determination of total protein content in biomedical products by the PDMS-assisted lab-in-a-syringe assay using 3D printed scaffolds removal

The aim of our work was to develop a low-cost, portable device for the fast and easy determination of total protein content by using PDMS-based lab-in-a-syringe technology with removal of 3D-printed channels. We proposed two designs with a one-step PDMS curing and a two-step PDMS-curing fabrication procedure. The one-step PDMS microdevices were found to be the best in the view of preparation, repeatability, and stability of the reagent. This design was then applied for the determination of total protein content in biomedical products using the Bradford assay.

Exosome-associated host–pathogen interaction: a potential effect of biofilm formation

Exosomes being non-ionized micro-vesicles with a size range of 30–100 nm possess the ability to bring about intracellular communication and intercellular transport of various types of cellular components like miRNA, mRNA, DNA, and proteins. This is achieved through the targeted transmission of various inclusions to nearby or distant tissues. This is associated with the effective communication of information to bring about changes in physiological properties and functional attributes. The extracellular vesicles (EVs), produced by fungi, parasites, and bacteria, are responsible to bring about modulation/alteration of the immune responses exerted by the host body. The lipids, nucleic acids, proteins, and glycans of EVs derived from the pathogens act as the ligands of different families of pattern recognition receptors of the host body. The bacterial membrane vesicles (BMVs) are responsible for the transfer of small RNA species, along with other types of noncoding RNA thereby playing a key role in the regulation of the host immune system. Apart from immunomodulation, the BMVs are also responsible for bacterial colonization in the host tissue, biofilm formation, and survival therein showing antibiotic resistance, leading to pathogenesis and virulence. This mini-review would focus on the role of exosomes in the development of biofilm and consequent immunological responses within the host body along with an analysis of the mechanism associated with the development of resistance.

In vitro antidermatophytic activity of bioactive compounds from selected medicinal plants

Fungal infections are among the most difficult diseases to manage in humans. Eukaryotic fungal pathogens share many similarities with their host cells, which impairs the development of antifungal compounds. Therefore, it is desirable to harness the pharmaceutical potential of medicinal plants for antifungal drug discovery. In this study, the antifungal activity of sixteen plant extracts was investigated against selected dermatophytic fungi. Of the sixteen plants, the cladode (leaf) of Asparagus racemosus, and seed extract of Cassia occidentalis showed antifungal activity against Microsporum gypseum, Microsporum nanum, Trichophyton mentagrophytes and Trichophyton terrestre. The plant antifungal compounds were located by direct bioassay against Cladosporium herbarum. IR and NMR spectrometry analyses of these compounds identified the presence of saponin (in A. racemosus) and hydroxy anthraquinone (in C. occidentalis) in these antifungal compounds. The antidermatophytic activity of plant anthraquinone and saponins with reports of little or no hemolytic activity, makes these compounds ideal for alternative antifungal therapy and warrants further in-depth investigation in vivo.

Quantitative analysis of galactose using LDI-TOF MS based on a TiO2 nanowire chip

A novel method for quantifying galactose was developed to serve as a newborn screening test for galactosemia using laser desorption/ionization time-of-flight (LDI-TOF) mass spectrometry (MS) with a TiO2 nanowire chip. Herein, phosphate citrate buffer, serum, and dried blood spot (DBS) were employed for the quantitative analysis of galactose. To quantitatively analyze galactose, its reduction potential was used to oxidize o-phenylene diamine (OPD) into 2,3-diaminophenazine (DA), which were both detected using LDI-TOF MS with a TiO2 nanowire chip according to the concentration of galactose. The reproducibility and the interference of glucose were determined to demonstrate the applicability of this method. Moreover, mixtures of galactose, phenylalanine, and 17 α-OHP were analyzed to determine the interference induced by other biomarkers of metabolic disorders. The OPD oxidation of galactose was found to be selectively achieved under high-glucose conditions, similar to human blood, thereby showing good reproducibility. The intensities of the mass peaks of OPD and DA based on LDI-TOF MS with a TiO2 nanowire chip were linearly correlated in the galactose concentration range of 57.2–220.0 μg/mL (r2 = 0.999 and 0.950, respectively) for serum samples and 52.5–220.0 μg/mL (r2 = 0.993 and 0.985, respectively) for DBS after methanol precipitation/extraction. The enzyme immunoassay and LDI-TOF MS analysis results were statistically analyzed, and a mixture of phenylalanine, 17 α-OHP, and galactose was simultaneously investigated quantitatively at the cutoff level.

Microscopic studies on severing properties of actin-binding protein: its potential use in therapeutic treatment of actin-rich inclusions

Actin is an important unit of the cytoskeletal system, involved in many cellular processes including cell motility, signaling, and intracellular trafficking. Various studies have been undertaken to understand the regulatory mechanisms pertaining actin functions, especially the ones controlled by actin-binding proteins. However, not much has been explored about the molecular aspects of these proteins implicated in various diseases. In this study, we aimed to demonstrate the molecular properties of gelsolin, an actin-severing protein on the disassembly of the aggregation of actin-rich intracellular inclusions, Hirano body. We observed a decreasing tendency of actin aggregation by co-sedimentation assay and transmission electron microscopy in the presence of gelsolin. Therefore, we provide suggestive evidence for the use of actin-severing protein in novel therapeutic strategies for neurodegenerative conditions.