Molecular mechanisms underlying the action of strigolactones involved in grapevine root development by interacting with other phytohormone signaling

2022 ◽  
Vol 293 ◽  
pp. 110709
Author(s):  
Songtao Jiu ◽  
Yan Xu ◽  
Jiyuan Wang ◽  
Muhammad Salman Haider ◽  
Jieming Xu ◽  
...  
Keyword(s):  
Root Development ◽  
Molecular Mechanisms ◽  
Phytohormone Signaling

Lateral root formation and nutrients: nitrogen in the spotlight

2021 ◽  
Author(s):  
Pierre-Mathieu Pélissier ◽  
Hans Motte ◽  
Tom Beeckman
Keyword(s):  
Signaling Pathways ◽  
Root System ◽  
Root Development ◽  
Lateral Root ◽  
Molecular Mechanisms ◽  
Root Formation ◽  
Lateral Roots ◽  
Nutrient Use Efficiency ◽  
Lateral Root Formation ◽  
Lateral Root Development

Abstract Lateral roots are important to forage for nutrients due to their ability to increase the uptake area of a root system. Hence, it comes as no surprise that lateral root formation is affected by nutrients or nutrient starvation, and as such contributes to the root system plasticity. Understanding the molecular mechanisms regulating root adaptation dynamics towards nutrient availability is useful to optimize plant nutrient use efficiency. There is at present a profound, though still evolving, knowledge on lateral root pathways. Here, we aimed to review the intersection with nutrient signaling pathways to give an update on the regulation of lateral root development by nutrients, with a particular focus on nitrogen. Remarkably, it is for most nutrients not clear how lateral root formation is controlled. Only for nitrogen, one of the most dominant nutrients in the control of lateral root formation, the crosstalk with multiple key signals determining lateral root development is clearly shown. In this update, we first present a general overview of the current knowledge of how nutrients affect lateral root formation, followed by a deeper discussion on how nitrogen signaling pathways act on different lateral root-mediating mechanisms for which multiple recent studies yield insights.

scholarly journals CLE-CLAVATA1 Signaling Pathway Modulates Lateral Root Development under Sulfur Deficiency

Plants ◽  
2019 ◽  
Vol 8 (4) ◽  
pp. 103 ◽  
Author(s):  
Wei Dong ◽  
Yinghua Wang ◽  
Hideki Takahashi
Keyword(s):  
Root Development ◽  
Lateral Root ◽  
Molecular Mechanisms ◽  
Plant Root ◽  
Root System Architecture ◽  
Wild Type ◽  
Lateral Root Development ◽  
S Deficiency ◽  
Cle Peptide ◽  
Plant Root System

Plant root system architecture changes drastically in response to availability of macronutrients in the soil environment. Despite the importance of root sulfur (S) uptake in plant growth and reproduction, molecular mechanisms underlying root development in response to S availability have not been fully characterized. We report here on the signaling module composed of the CLAVATA3 (CLV3)/EMBRYO SURROUNDING REGION (CLE) peptide and CLAVATA1 (CLV1) leucine-rich repeat receptor kinase, which regulate lateral root (LR) development in Arabidopsis thaliana upon changes in S availability. The wild-type seedlings exposed to prolonged S deficiency showed a phenotype with low LR density, which was restored upon sulfate supply. In contrast, the clv1 mutant showed a higher daily increase rate of LR density relative to the wild-type under prolonged S deficiency, which was diminished to the wild-type level upon sulfate supply, suggesting that CLV1 directs a signal to inhibit LR development under S-deficient conditions. CLE2 and CLE3 transcript levels decreased under S deficiency and through CLV1-mediated feedback regulations, suggesting the levels of CLE peptide signals are adjusted during the course of LR development. This study demonstrates a fine-tuned mechanism for LR development coordinately regulated by CLE-CLV1 signaling and in response to changes in S availability.

scholarly journals Unraveling the Intricate Nexus of Molecular Mechanisms Governing Rice Root Development: OsMPK3/6 and Auxin-Cytokinin Interplay

PLoS ONE ◽  
2015 ◽  
Vol 10 (4) ◽  
pp. e0123620 ◽  
Author(s):  
Pallavi Singh ◽  
Tapan Kumar Mohanta ◽  
Alok Krishna Sinha
Keyword(s):  
Root Development ◽  
Molecular Mechanisms ◽  
Rice Root

scholarly journals Comparative Transcriptome Analysis of Storage Root Reveals Regulatory Mechanisms of Lignin Biosynthesis During Root Development in Two Sweetpotato Cultivars

2021 ◽  
Author(s):  
Fuyun Hou ◽  
Zhen Qin ◽  
Taifeng Du ◽  
Yuanyuan Zhou ◽  
Aixian Li ◽  
...  
Keyword(s):  
Root Development ◽  
Ipomoea Batatas ◽  
Molecular Mechanisms ◽  
Signal Transduction Pathway ◽  
Lignin Biosynthesis ◽  
Storage Root ◽  
Storage Roots ◽  
Homologous Genes ◽  
Phenylpropanoid Biosynthesis ◽  
Storage Root Development

Abstract BackgroundSweetpotato(Ipomoea batatas (L.) Lam.) is one of the most important crops with high storage roots yield. Lignin affects the storage root formation. However, the molecular mechanisms of lignin biosynthesis in storage roots development have been lacking.ResultsTo reveal the molecular mechanism of lignin biosynthesis and identify new homologous genes in lignin biosynthesis during storage root development, the storage root (SR) at three different stages (D1, D2 and D3) in the two cultivars (Jishu25 and Jishu29) was investigated with full-length and second-generation transcriptome. A total of 52,137 transcripts and 21,148 unigenes were obtained after corrected with Hiseq2500 sequencing. Through the comparative analysis, 9577 unigenes were found to be differently expressed in the different stage in two cultivars. Among of them, 91 unigenes enriched in the phenylpropanoid biosynthesis, and 201 unigenes in hormone signal transduction pathway with KEGG analysis. Weighted gene co-expression network analysis of differentially expressed unigenes showed that lignin biosynthesis genes might be co-expressed with transcription factors such as AP2/ERF and MYB at the transcription level, and regulated by phytohormones auxin and GA3.ConclusionsTaken together, our findings will throw light on molecular regulatory mechanism of lignin biosynthesis involved in storage root development.

scholarly journals Use of Transcriptomic Analyses to Elucidate the Mechanism Governing Nodal Root Development in Eremochloa ophiuroides (Munro) Hack.

2021 ◽  
Vol 12 ◽  
Author(s):  
Rui Wang ◽  
Haoyan Zhao ◽  
Hailin Guo ◽  
Junqin Zong ◽  
Jianjian Li ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Transcription Factors ◽  
Root Development ◽  
Molecular Mechanisms ◽  
Homologous Gene ◽  
Root Tips ◽  
Rooting Ability ◽  
Nodal Roots ◽  
Nodal Root ◽  
Eremochloa Ophiuroides

Centipedegrass [Eremochloa ophiuroides (Munro) Hack.] is a perennial warm-season grass that originated in China, and its speed of nodal rooting is important for lawn establishment. In our study, centipedegrass nodal rooting ability was limited by node aging. Transcriptome sequencing of nodal roots after 0, 2, 4, and 8 days of water culture was performed to investigate the molecular mechanisms of root development. GO enrichment and KEGG pathway analyses of DEGs indicated that plant hormone signal transduction and transcription factors might play important roles in centipedegrass nodal root growth. Among them, E3 ubiquitin-protein ligases participated in multiple hormone signal transduction pathways and interacted with transcription factors. Furthermore, an E3 ubiquitin protein ligase EoSINAT5 overexpressed in rice resulted in longer roots and more numerous root tips, while knockout of LOC_Os07g46560 (the homologous gene of EoSINAT5 in rice) resulted in shorter roots and fewer root tips. These results indicated that EoSINAT5 and its homologous gene are able to promote nodal root development. This research presents the transcriptomic analyses of centipedegrass nodal roots, and may contribute to elucidating the mechanism governing the development of nodal roots and facilitates the use of molecular breeding in improving rooting ability.

scholarly journals Fine control of aerenchyma and lateral root development through AUX/IAA- and ARF-dependent auxin signaling

2019 ◽  
Vol 116 (41) ◽  
pp. 20770-20775 ◽  
Author(s):  
Takaki Yamauchi ◽  
Akihiro Tanaka ◽  
Hiroki Inahashi ◽  
Naoko K. Nishizawa ◽  
Nobuhiro Tsutsumi ◽  
...  
Keyword(s):  
Root Development ◽  
Molecular Mechanisms ◽  
Auxin Transport ◽  
Lateral Roots ◽  
Cortical Cell ◽  
Dominant Negative ◽  
Dominant Negative Effect ◽  
Auxin Signaling ◽  
Transport Inhibitor ◽  
Auxin Transport Inhibitor

Lateral roots (LRs) are derived from a parental root and contribute to water and nutrient uptake from the soil. Auxin/indole-3-acetic acid protein (AUX/IAA; IAA) and auxin response factor (ARF)-mediated signaling are essential for LR formation. Lysigenous aerenchyma, a gas space created by cortical cell death, aids internal oxygen transport within plants. Rice (Oryza sativa) forms lysigenous aerenchyma constitutively under aerobic conditions and increases its formation under oxygen-deficient conditions; however, the molecular mechanisms regulating constitutive aerenchyma (CA) formation remain unclear. LR number is reduced by the dominant-negative effect of a mutated AUX/IAA protein in the iaa13 mutant. We found that CA formation is also reduced in iaa13. We have identified ARF19 as an interactor of IAA13 and identified a lateral organ boundary domain (LBD)-containing protein (LBD1-8) as a target of ARF19. IAA13, ARF19, and LBD1-8 were highly expressed in the cortex and LR primordia, suggesting that these genes function in the initiation of CA and LR formation. Restoration of LBD1-8 expression recovered aerenchyma formation and partly recovered LR formation in the iaa13 background, in which LBD1-8 expression was reduced. An auxin transport inhibitor suppressed CA and LR formation, and a natural auxin stimulated CA formation in the presence of the auxin transport inhibitor. Our findings suggest that CA and LR formation are both regulated through AUX/IAA- and ARF-dependent auxin signaling. The initiation of CA formation lagged that of LR formation, which indicates that the formation of CA and LR are regulated differently by auxin signaling during root development in rice.

scholarly journals Gluconacetobacter diazotrophicus Changes The Molecular Mechanisms of Root Development in Oryza sativa L. Growing Under Water Stress

2020 ◽  
Vol 21 (1) ◽  
pp. 333 ◽  
Author(s):  
Renata Silva ◽  
Luanna Filgueiras ◽  
Bruna Santos ◽  
Mariana Coelho ◽  
Maria Silva ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Drought Stress ◽  
Root Growth ◽  
Root Development ◽  
Molecular Mechanisms ◽  
Oryza Sativa L ◽  
Gluconacetobacter Diazotrophicus ◽  
Red Rice ◽  
Bacterial Inoculation ◽  
Rice Plants

Background: Inoculation with Gluconacetobacter diazotrophicus has shown to influence root development in red rice plants, and more recently, the induced systemic tolerance (IST) response to drought was also demonstrated. The goal of this study was to evaluate the inoculation effect of G. diazotrophicus strain Pal5 on the amelioration of drought stress and root development in red rice (Oryza sativa L.). Methods: The experimental treatments consist of red rice plants inoculated with and without strain Pal5 in presence and absence of water restriction. Physiological, biochemical, and molecular analyses of plant roots were carried out, along with measurements of growth and biochemical components. Results: The plants showed a positive response to the bacterial inoculation, with root growth promotion and induction of tolerance to drought. An increase in the root area and higher levels of osmoprotectant solutes were observed in roots. Bacterial inoculation increased the drought tolerance and positively regulated certain root development genes against the water deficit in plants. Conclusion: G. diazotrophicus Pal5 strain inoculation favored red rice plants by promoting various root growth and developmental mechanisms against drought stress, enabling root development and improving biochemical composition.

scholarly journals The Ca2+ sensor protein CMI1 fine tunes root development, auxin distribution and responses

2018 ◽  
Author(s):  
Ora Hazak ◽  
Elad Mamon ◽  
Meirav Lavy ◽  
Hasana Sternberg ◽  
Smrutisanjita Behera ◽  
...  
Keyword(s):  
Root Growth ◽  
Root Development ◽  
Lateral Root ◽  
Developmental Plasticity ◽  
Molecular Mechanisms ◽  
Ectopic Expression ◽  
Growth Arrest ◽  
Root Hairs ◽  
Root Tip ◽  
Auxin Distribution

Signaling cross-talks between auxin, a regulator of plant development and Ca2+, a universal second messenger have been proposed to modulate developmental plasticity in plants. However, the underlying molecular mechanisms are largely unknown. Here we report that in Arabidopsis roots, auxin elicits specific Ca2+ signaling pattern that spatially coincide with the expression pattern of auxin-regulated genes. We identified the EF-hand protein CMI1 (Ca2+ sensor Modulator of ICR1) as an interactor of the ROP effector ICR1 (Interactor of Constitutively active ROP). CMI1 is monomeric in solution, changes its secondary structure at Ca2+ concentrations ranging from 10-9 to 10-8 M and its interaction with ICR1 is Ca2+ dependent, involving a conserved hydrophobic pocket. cmi1 mutants display an increased auxin response including shorter primary roots, longer root hairs, longer hypocotyls and altered lateral root formation while ectopic expression of CMI1 induces root growth arrest and reduced auxin responses at the root tip. When expressed alone, CMI1 is localized at the plasma membrane, the cytoplasm and in nuclei. Interaction of CMI1 and ICR1 results in exclusion of CMI1 from nuclei and suppression of the root growth arrest. CMI1 expression is directly upregulated by auxin while expression of auxin induced genes is enhanced in cmi1 concomitantly with repression of auxin induced Ca2+ increases in the lateral root cap and vasculature, indicating that CMI1 represses early auxin responses. Collectively, our findings identify a crucial function of Ca2+ signaling and CMI1 in root growth and suggest an auxin-Ca2+ regulatory feedback loop that fine tunes root development.

Molecular and Environmental Regulation of Root Development

2019 ◽  
Vol 70 (1) ◽  
pp. 465-488 ◽  
Author(s):  
Hans Motte ◽  
Steffen Vanneste ◽  
Tom Beeckman
Keyword(s):  
Root Development ◽  
Molecular Mechanisms ◽  
Current Knowledge ◽  
Primary Root ◽  
Root Apical Meristem ◽  
Control Mechanisms ◽  
Root Branching ◽  
And Control ◽  
The Impact

In order to optimally establish their root systems, plants are endowed with several mechanisms to use at distinct steps during their development. In this review, we zoom in on the major processes involved in root development and detail important new insights that have been generated in recent studies, mainly using the Arabidopsis root as a model. First, we discuss new insights in primary root development with the characterization of tissue-specific transcription factor complexes and the identification of non-cell-autonomous control mechanisms in the root apical meristem. Next, root branching is discussed by focusing on the earliest steps in the development of a new lateral root and control of its postemergence growth. Finally, we discuss the impact of phosphate, nitrogen, and water availability on root development and summarize current knowledge about the major molecular mechanisms involved.

Home sweet home – how mutualistic microbes modify root development to promote symbiosis

2020 ◽  
Author(s):  
Mina Ghahremani ◽  
Allyson M MacLean
Keyword(s):  
Root Development ◽  
Cell Biology ◽  
Developmental Plasticity ◽  
Molecular Mechanisms ◽  
General Knowledge ◽  
Cortical Cells ◽  
Specific Manner ◽  
Organism Growth ◽  
Microbe Interactions ◽  
Developmentally Responsive

Abstract Post-embryonic organogenesis has uniquely equipped plants to become developmentally responsive to their environment, affording opportunities to remodel organism growth and architecture to an extent not possible in other higher order eukaryotes. It is this developmental plasticity that makes the field of plant-microbe interactions an exceptionally fascinating venue in which to study symbiosis. This review article describes the various ways in which mutualistic microbes alter the growth, development, and architecture of the roots of their plant hosts. We first summarize general knowledge of root development, and then examine how association of plants with beneficial microbes affects these processes. Working our way inwards from the epidermis to the pericycle, this review dissects the cell biology and molecular mechanisms underlying plant-microbe interactions in a tissue-specific manner. We examine the ways in which microbes gain entry into the root, and modify this specialized organ for symbiont accommodation, with a particular emphasis on the colonization of root cortical cells. We present significant advances in our understanding of root-microbe interactions, and conclude our discussion by identifying questions pertinent to root endosymbiosis that at present remain unresolved.

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