scholarly journals Comparison of Selection Signatures between Korean Native and Commercial Chickens Using 600K SNP Array Data

Genes ◽  
2021 ◽  
Vol 12 (6) ◽  
pp. 824
Author(s):  
Sunghyun Cho ◽  
Prabuddha Manjula ◽  
Minjun Kim ◽  
Eunjin Cho ◽  
Dooho Lee ◽  
...  
Keyword(s):  
Snp Array ◽  
Initial Step ◽  
Reproductive Organs ◽  
High Linkage Disequilibrium ◽  
Primary Data ◽  
Multiple Traits ◽  
Indigenous Chicken ◽  
Primary Data Analysis ◽  
The Government ◽  
Commercial Chickens

Korean native chickens (KNCs) comprise an indigenous chicken breed of South Korea that was restored through a government project in the 1990s. The KNC population has not been developed well and has mostly been used to maintain purebred populations in the government research institution. We investigated the genetic features of the KNC population in a selection signal study for the efficient improvement of this breed. We used 600K single nucleotide polymorphism data sampled from 191 KNCs (NG, 38; NL, 29; NR, 52; NW, 39; and NY, 33) and 54 commercial chickens (Hy-line Brown, 10; Lohmann Brown, 10; Arbor Acres, 10; Cobb, 12; and Ross, 12). Haplotype phasing was performed using EAGLE software as the initial step for the primary data analysis. Pre-processed data were analyzed to detect selection signals using the ‘rehh’ package in R software. A few common signatures of selection were identified in KNCs. Most quantitative trait locus regions identified as candidate regions were associated with traits related to reproductive organs, eggshell characteristics, immunity, and organ development. Block patterns with high linkage disequilibrium values were observed for LPP, IGF11, LMNB2, ERBB4, GABRB2, NTM, APOO, PLOA1, CNTN1, NTSR1, DEF3, CELF1, and MEF2D genes, among regions with confirmed selection signals. NL and NW lines contained a considerable number of selective sweep regions related to broilers and layers, respectively. We recommend focusing on improving the egg and meat traits of KNC NL and NW lines, respectively, while improving multiple traits for the other lines.

scholarly journals Intermixing of Commercial Pure Breed Chickens with Indigenous (Sakini) Breed of Nepal

2021 ◽  
Vol 7 ◽  
pp. 92-96
Author(s):  
Neena Amatya Gorkhali ◽  
Chhiring Sherpa ◽  
Mana Raj Kolachhapati ◽  
Bhoj Raj Pokharel ◽  
Nirajan Bhattarai ◽  
...  
Keyword(s):  
Rhode Island ◽  
Genetic Erosion ◽  
Variable Region ◽  
Production Performance ◽  
Indigenous Chicken ◽  
Three Samples ◽  
The Status ◽  
D Loop ◽  
The Government ◽  
Commercial Chickens

The intermixing of pure breeds of commercial chickens with Nepalese indigenous flock of chickens has not been explored yet genetically. The study aims to investigate the status of interbreeding of Nepalese indigenous chickens with exotic breeds. Thirty three samples of indigenous chicken, Sakini, from three different ecological regions, Terai, mid-hill and high hill, were taken for the study. The 522 bp hyper-variable region of D loop mtDNA of each sampled population was PCR amplified and sequenced. The Neighbor joining tree revealed that most of Nepalese Sakini and commercial chickens such as New Hampshire, Rhode Island Red, White Leghorn, White Plymouth Rock and Barred Plymouth Rock lied in same clade. Our study provides first direct evidence that the Sakini was already bred with commercial breeds for the sake of enhancing production performance and also alarms the government to introduce proper strategies and policies to avoid such genetic erosion.

scholarly journals Analisis Kebijakan Permukiman Liar di Sempadan Banjir Kanal Timur

2018 ◽  
Vol 6 (3) ◽  
pp. 264-272
Author(s):  
Lavinia Elisa Berliana ◽  
Amin Pujiati
Keyword(s):  
Public Policy ◽  
Qualitative Approach ◽  
Social Condition ◽  
Economic Conditions ◽  
Primary Data ◽  
Research Use ◽  
Policy Model ◽  
Primary Data Analysis ◽  
The Government ◽  
Societal Expectations

Tujuan yang akan dicapai dari penelitian ini adalah menganalisis faktor-faktor yang mendorong masyarakat mendirikan dan menghuni permukiman liar, menganalisis solusi yang diberikan Pemerintah sebagai kebijakan penanganan permukiman liar di Sempadan Banjir Kanal Timur Kelurahan Pandean Lamper, menganalisis harapan masyarakat kepada pemerintah yang terkena dampak relokasi. Populasi penelitian ini seluruh penghuni bangunan liar yang berjumlah 643 bangunan dengan sampel 87 bangunan. Penelitian ini menggunakan pendekatan  kualitatif dengan data primer. Alat analisis yang digunakan adalah analisis deskriptif persentase dan model kebijakan publik.Hasil penelitian menunjukkan bahwa faktor-faktor yang mendorong masyarakat mendirikan dan menghuni permukiman liar adalah kondisi ekonomi masyarakat yang lemah, aksesibilitas rumah liar yang cukup tinggi, dan kondisi sosial asal daerah masyarakat. Solusi yang diberikan pemerintah untuk menangani permukiman liar adalah melakukan relokasi masyarakat. Namun,  masyarakat meminta jaminan dan kompensasi dari pemerintah sebagai bentuk ganti rugi dan kepedulian kepada masyarakat. The aim of this research is to analyze the factors that drive residents to erect buildings and reside in illegal housing, to analyze the solutions that Government give as a policy addressing illegal housing in Sempadan’s flood canal Kelurahan Pandean Lamper, to analyze the societal expectations to the government of Semarang city as a result of land eviction. The research’s population contain 643 houses and 87 houses for sample. This research use qualitative approach with the use of primary data. Analysis tools for this research is descriptive percentage analysis and public policy model.  The results of this research shows that the factors that drives residents to build houses and resides there is weak economic conditions, high illegal housing accessibility, and social condition. The solution that goverment to handling illegal housing is to do relocationg for the residents. But, the residents asked for compensation from the government as a form of social responsibility

scholarly journals TINGKAT PENGETAHUAN SUAMI TENTANG TANDA BAHAYA NIFAS BERHUBUNGAN DENGAN DUKUNGAN MASA NIFAS

2017 ◽  
Vol 5 (1) ◽  
pp. 43-54
Author(s):  
Winancy Winancy Winancy
Keyword(s):  
Quantitative Research ◽  
Post Partum ◽  
Health And Safety ◽  
Reproductive Organs ◽  
Primary Data ◽  
P Value ◽  
Cross Sectional ◽  
Danger Signs ◽  
Postpartum Support ◽  
The Government

Puerperal period is a time of risk of complications for the mother because the reproductive organs in the process of recovery. Families and postpartum women are not aware of it because the focus of their attention is on the newborn. Postpartum support is needed for a mother so that childbirth can be passed without complication. Support to mother's health and safety is done by the government through Safe Matherhood Program and Mother Love Movement (GSI). This study aims to determine the relationship between the level of knowledge and attitudes of husbands about the danger signs of puerperal with support during the postpartum period. Based on data from the Ministry of Health RI in 2012 showed thatpostpartum complications contribute as the cause of maternal mortality is quite high around 30.2%. This research is quantitative research with cross sectional design. The population consist of husbands of post pastum women with a sample of 97 respondents. the technique of sampling is done in a non random sampling in accordance with the criteria of inclusion and accidental sampling. The data using primary data in the form of a questionnaire. The results showed there was a significant relationship between knowledge and postpartum support. The husband's knowledge is a factor has an important influence on post partum support with p value < 0.05 (0, 005). Health education or counseling to the husband is important given how to increase the participation of the husband to providing support to his wife during puerperium.

Which Data to Meta-Analyze, and How?

2019 ◽  
Vol 227 (1) ◽  
pp. 64-82 ◽  
Author(s):  
Martin Voracek ◽  
Michael Kossmeier ◽  
Ulrich S. Tran
Keyword(s):  
Empirical Research ◽  
Meta Analysis ◽  
Curve Analysis ◽  
Research Progress ◽  
Primary Data ◽  
Statistical Procedures ◽  
Graphical Displays ◽  
Primary Data Analysis ◽  
Meta Analyses ◽  
Data Analytic

Abstract. Which data to analyze, and how, are fundamental questions of all empirical research. As there are always numerous flexibilities in data-analytic decisions (a “garden of forking paths”), this poses perennial problems to all empirical research. Specification-curve analysis and multiverse analysis have recently been proposed as solutions to these issues. Building on the structural analogies between primary data analysis and meta-analysis, we transform and adapt these approaches to the meta-analytic level, in tandem with combinatorial meta-analysis. We explain the rationale of this idea, suggest descriptive and inferential statistical procedures, as well as graphical displays, provide code for meta-analytic practitioners to generate and use these, and present a fully worked real example from digit ratio (2D:4D) research, totaling 1,592 meta-analytic specifications. Specification-curve and multiverse meta-analysis holds promise to resolve conflicting meta-analyses, contested evidence, controversial empirical literatures, and polarized research, and to mitigate the associated detrimental effects of these phenomena on research progress.

Klasifikasi Tahap Kematangan Pisang Ambon Berdasarkan Warna Menggunakan Naive Bayes

2018 ◽  
Vol 5 (2) ◽  
pp. 60-67 ◽  
Author(s):  
Dwi Yulianto ◽  
Retno Nugroho Whidhiasih ◽  
Maimunah Maimunah
Keyword(s):  
Naive Bayes ◽  
Fruit Production ◽  
Naïve Bayes ◽  
Primary Data ◽  
Banana Fruit ◽  
Bayes Method ◽  
Classification Image ◽  
Average Accuracy ◽  
The Government

ABSTRACT   Banana fruit is a commodity that contributes a great value to both national and international fruit production achievement. The government through the National Standardization Agency establishes standards to maintain the quality of bananas. The purpose of this Project is to classify the stages of maturity of Ambon banana base on the color index using Naïve Bayes method in accordance with the regulations of SNI 7422:2009. Naive Bayes is used as a method in the classification process by comparing the probability values generated from the variable value of each model to determine the stage of Ambon banana maturity. The data used is the primary data image of 105 pieces of Ambon banana. By using 3 models which consists of different variables obtained the same greatest average accuracy by using the 2nd model which has 9 variable values (r, g, b, v, * a, * b, entropy, energy, and homogeneity) and the 3rd model has 7 variable values (r, g, b, v , * a, entropy and homogeneity) that is 90.48%.   Keywords: banana maturity, classification, image processing     ABSTRAK   Buah pisang merupakan komoditas yang memberikan kontribusi besar terhadap angka produksi buah nasional maupun internasional. Pemerintah melalui Badan Standarisasi Nasional menetapkan standar untuk buah pisang, menjaga mutu  buah pisang. Tujuan dari penelitian ini adalah klasifikasi tahapan kematangan dari buah pisang ambon berdasarkan indeks warna menggunakan metode Naïve Bayes  sesuai dengan SNI 7422:2009. Naive bayes digunakan sebagai metode dalam proses pengklasifikasian dengan cara membandingkan nilai probabilitas yang dihasilkan dari nilai variabel penduga setiap model untuk menentukan tahap kematangan pisang ambon. Data yang digunakan adalah data primer citra pisang ambon sebanyak 105. Dengan menggunakan 3 buah model yang terdiri dari variabel penduga yang berbeda didapatkan akurasi rata-rata terbesar yang sama yaitu dengan menggunakan model ke-2 yang mempunyai 9 nilai variabel (r, g, b, v, *a, *b, entropi, energi, dan homogenitas) dan model ke-3 yang mempunyai 7 nilai variabel (r, g, b, v, *a, entropi dan homogenitas) yaitu sebesar 90.48%.   Kata Kunci : kematangan pisang,  klasifikasi, pengolahan citra

ANALISIS FAKTOR-FAKTOR YANG MEMPENGARUHI TAX COMPLIANCE TERHADAP PENYAMPAIAN SPT TAHUNAN WAJIB PAJAK ORANG PRIBADI

2019 ◽  
Vol 3 (2) ◽  
pp. 19
Author(s):  
Mela Cyntia Sani ◽  
Khuznatul Zulfa Wafirotin ◽  
Ika Farida Ulfa
Keyword(s):  
Behavioral Control ◽  
Linear Regression Analysis ◽  
Tax Compliance ◽  
Multiple Linear Regression Analysis ◽  
Primary Data ◽  
Analysis Method ◽  
Online Systems ◽  
Tax Returns ◽  
Directorate General ◽  
The Government

Individual Taxpayers (WPOP) experience problems every year due to difficulties in filling out SPT. The Directorate General of Taxes issued a new policy in providing easy Notification Services (SPT) using online systems namely e-Filling and e-SPT. The policy taken by the government turned out that there were still many obstacles faced by the KPP Pratama Ponorogo Tax Office regarding ponorogo's lack of understanding related to filling out SPT manually or online using e-SPT and e-Felling. So that this certainly can make taxpayers object to the submission of Annual Tax Returns, especially in terms of calculating the tax payable which must be calculated on its own. Data collection is done by using primary data in the form of questionnaires. The samples processed in this study were 100 respondents who were distributed to individual taxpayers registered at KPP Pratama Ponorogo. Data analysis method uses validity test and reliability test, hypothesis testing using multiple linear regression analysis. The results of this study indicate that the awareness of taxpayers, taxpayer intentions, taxpayer attitudes, subjective norms, behavioral control and ease of tax return filling process affect Tax Compliance (tax compliance) submission of Annual Tax Returns. This is because taxpayers know, understand and implement taxation provisions correctly and voluntarily so as to increase taxpayer compliance in fulfilling their obligations and are willing to report taxes with their own awareness.

University As A Social Entreprise:Modelling Enterprise 3.0 Application In Engineering Curriculum

2014 ◽  
Vol 1 (1) ◽  
pp. 393-398
Author(s):  
Andreas Ahrens ◽  
Olaf Bassus ◽  
Jeļena Zaščerinska
Keyword(s):  
Social Enterprise ◽  
Primary Data ◽  
Engineering Curriculum ◽  
Positive Direction ◽  
Social Agent ◽  
Primary Data Analysis ◽  
The Social ◽  
Technical Expert ◽  
Knowledge And Attitude ◽  
Broad Understanding

AbstractUniversity as a social enterprise has become the dominant response to the challenge of bringing up an engineer as a first-rate technical expert who acts as a social agent, rather than just a technician, with a “broad understanding of the social and philosophical context in which he will work” [3]. Aim of the research is to analyze student engineers' Enterprise 3.0 application in engineering curriculum. The meaning of the key concepts of university as a social enterprise, engineering curriculum and Enterprise 3.0 is studied. Explorative research has been used. The empirical study was conducted at Riga Technical University, Riga, Latvia, in 2011. Descriptive statistics was implemented for primary data analysis. The findings of the research allow drawing the conclusions on the favourable context of Enterprise 3.0 application in engineering curriculum as the student engineers' knowledge and attitude towards Enterprise 3.0 application are positive. Direction of further research are proposed.

PERANAN INSPEKTORAT KABUPATENSUMENEP DALAM MENCEGAH DAN MENDETEKSI FRAUD DI DINAS PENDIDIKAN SUMENEP

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Astri Furqani ◽  
Hafidhah .
Keyword(s):  
Local Government ◽  
Qualitative Study ◽  
Asset Management ◽  
Sampling Technique ◽  
Research Data ◽  
Qualitative Approach ◽  
Primary Data ◽  
The Government

In this era, a lot of activities that can not be separated from the practice of cheating or fraud , no exception In the government . Inspektorat Sumenep is the leading institution of internal Local Government in preventing and detecting fraud in the Local Government appropiate Perbup Sumenep No. 29 of 2008 . Dinas Pendidikan Sumenep need attention on the issue . This is due to Dinas Pendidikan Sumenep an agency with the largest number of assets and managing large budgets . These conditions led to the formulation of the problem is How Inspektorat Sumenep role in preventing and detecting fraud in Dinas Pendidikan Sumenep. This study used a qualitative approach in which the focus of this study is Inspektorat role in preventing and detecting fraud at Dinas Pendidikan Sumenep . Primary data obtained by direct interviews with the parties directly related to the determination of the source of research data in a qualitative study using nonprobability sampling . The sampling technique used was purposive sampling . The conclusion of this study, role of the Inspektorat Sumenep in the prevention of fraud in Dinas Pendidikan Sumenep still not maximal . This is due to Inspektorat Sumenep not supervise from the planning / budgeting and not optimal in overseeing and assisting the implementation of the SPIP as an instrument of fraud prevention in Dinas Pendidikan Sumenep . The role of Inspektorat Sumenep in the detection of fraud in Dinas Pendidikan Sumenep done by conducting an audit of financial and asset management in each financial year.Keywords: fraud, government, inspektorat.

DAYA SAING DAN PERAN PEMERINTAH DALAM MENINGKATKAN DAYA SAING KOMODITI KAKAO DI SULAWESI TENGAH

2017 ◽  
Vol 11 (1) ◽  
pp. 69-96
Author(s):  
Siti Yuliaty Chansa Arfah ◽  
Harianto . ◽  
Suharno .
Keyword(s):  
Policy Analysis ◽  
Government Policy ◽  
Secondary Data ◽  
Research Area ◽  
Primary Data ◽  
Cocoa Beans ◽  
Output Analysis ◽  
The Government ◽  
Central Sulawesi ◽  
Policy Analysis Matrix

Penelitian ini bertujuan untuk mengkaji daya saing komoditi kakao di Sulawesi Tengah dan melihat peran pemerintah dalam meningkatkan daya saing komoditi kakao. Data primer berasal dari observasi, wawancara dan kuesioner, sementara data sekunder berasal dari instansi terkait. Metode analisis menggunakan Policy Analysis Matrix (PAM) dan analisis sensitivitas. Penelitian ini menemukan bahwa nilai PCR Kabupaten Parigi Moutong 0,589 dan Kabupaten Sigi 0,396. Sedangkan nilai DRC Kabupaten Parigi Moutong 0,387 dan Kabupaten Sigi 0,319. Hal tersebut mengindikasikan bahwa usahatani komoditi kakao di Sulawesi Tengah memiliki daya saing, namun tidak menguntungkan secara ekonomi karena Sulawesi Tengah menghasilkan biji kakao yang tidak difermentasi akibatnya petani menerima harga rendah. Berdasarkan hasil analisis, pemerintah belum memberikan proteksi terhadap harga biji kakao dalam negeri melalui harga referensi biji kakao sehingga harga biji kakao didaerah penelitian masih tergolong rendah jika dibandingkan dengan harga di pasar internasional. Sementara terhadap input, pemerintah telah memberikan kebijakan subsidi kepada petani, namun implementasinya masih perlu perbaikan terutama terkait penyaluran dan pengelolaan bantuan agar merata. Kajian ini merekomendasikan masih diperlukan kebijakan pemerintah baik terhadap input maupun output untuk meningkatkan produktivitas, menurunkan biaya produksi dan menaikkan harga jual biji kakao, sehingga dapat meningkatkan daya saing biji kakao. The purpose of this study is to assess the competitiveness of cocoa in Central Sulawesi and to investigate the role of government in improving the competitiveness of cocoa. The primary data were generated through observation, interviews and some questionnaires. The secondary data were obtained from the agency or the institution related to the research. This study uses the Policy Analysis Matrix (PAM) and sensitivity analysis. The study found that the PCR value for Parigi Moutong district was 0.589 and Sigi district was 0.396. While, the DRC value for Parigi Moutong district was 0.387 and Sigi district was 0.319. This indicates that cocoa beans farming in Central Sulawesi has competitiveness, but not economically beneficial because Central Sulawesi produces unfermented cocoa beans consequently farmers receive low prices. Based on the results of the government's impact on output analysis, the government did not provide protection for domestic cocoa seed prices through the reference price of cocoa beans, consequently the price of domestic cocoa beans, particularly in the research area, was relatively low compared to the price of cocoa beans at the international market. Seen from the government policy on inputs, the government have provided subsidies to farmers but they need to improve the distribution and management of aid to be evenly distributed. It is necessary to set up good government policy on inputs and outputs in order to increase cocoa seed productivity, decrease production cost and increase the price which simultaneously can improve its competitiveness in the research location.

scholarly journals Amidst Covid-19 Pandemic: An Adaptive Disaster Governance in Yogyakarta, Indonesia

2021 ◽  
Vol 10 (3) ◽  
pp. 92
Author(s):  
Dyah Rahmawati Hizbaron ◽  
Dina Ruslanjari ◽  
Djati Mardiatno
Keyword(s):  
Spatial Data ◽  
Online Survey ◽  
Local Development ◽  
Development Planning ◽  
Research Area ◽  
Primary Data ◽  
Adaptive Governance ◽  
First Case ◽  
The Government ◽  
Information Conflict

Since Indonesia reported its first case of COVID-19 in the capital, Jakarta, in early March of 2020, the pandemic has affected 102,051,000 lives. In the second week of the month, the government mandated all sectors to take necessary actions to curb the spread. The research set out to evaluate how the disaster emergency response was carried out amid the COVID-19 pandemic in the Special Region of Yogyakarta (SRY). The research employs qualitative observation of adaptive governance variables, i.e., infrastructure availability, information, conflict mechanism, regulation, and adaptation. The research analyzed primary data collected from focus group discussions with key persons at the Local Disaster Management Agency, Local Development Planning Agency, and Disaster Risk Reduction Platform responsible for the crisis and included an online survey to validate data. The research revealed that the SRY had exhibited adaptive governance to the COVID-19 pandemic, as apparent by, among others, open-access spatial and non-spatial data, extensive combined uses of both types of data, and prompt active engagement of communities in the enforcement of new rules and regulations mandated by national and provincial governments. Furthermore, during emergency responses to COVID-19, the stakeholders provided infrastructure and information, dealt with conflicts in multiple spatial units, encouraged adaptations, and formulated emergent rules and regulations. For further research, we encourage qualitative analysis to confront other types of natural disaster for the research area.

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