scholarly journals iTRAQ-Based Comparative Proteomic Analysis Provides Insights into Molecular Mechanisms of Salt Tolerance in Sugar Beet (Beta vulgaris L.)

2018 ◽  
Vol 19 (12) ◽  
pp. 3866 ◽  
Author(s):  
Guo-Qiang Wu ◽  
Jin-Long Wang ◽  
Rui-Jun Feng ◽  
Shan-Jia Li ◽  
Chun-Mei Wang
Keyword(s):  
Salt Tolerance ◽  
Sugar Beet ◽  
Beta Vulgaris ◽  
Molecular Mechanisms ◽  
Stress Factors ◽  
Pcr Analysis ◽  
Absolute Quantitation ◽  
Abiotic Stress Factors ◽  
Starting Point ◽  
Isobaric Tags

Salinity is one of the major abiotic stress factors that limit plant growth and crop yield worldwide. To understand the molecular mechanisms and screen the key proteins in response of sugar beet (Beta vulgaris L.) to salt, in the present study, the proteomics of roots and shoots in three-week-old sugar beet plants exposed to 50 mM NaCl for 72 h was investigated by isobaric Tags for Relative and Absolute Quantitation (iTRAQ) technology. The results showed that 105 and 30 differentially expressed proteins (DEPs) were identified in roots and shoots of salt-treated plants compared with untreated plants, respectively. There were 46 proteins up-regulated and 59 proteins down-regulated in roots; and 13 up-regulated proteins and 17 down-regulated proteins found in shoots, respectively. These DEPs were mainly involved in carbohydrate metabolism, energy metabolism, lipid metabolism, biosynthesis of secondary metabolites, transcription, translation, protein folding, sorting, and degradation as well as transport. It is worth emphasizing that some novel salt-responsive proteins were identified, such as PFK5, MDH, KAT2, ACAD10, CYP51, F3H, TAL, SRPR, ZOG, V-H+-ATPase, V-H+-PPase, PIPs, TIPs, and tubulin α-2/β-1 chain. qRT-PCR analysis showed that six of the selected proteins, including BvPIP1-4, BvVP and BvVAP in root and BvTAL, BvURO-D1, and BvZOG in shoot, displayed good correlation between the expression levels of protein and mRNA. These novel proteins provide a good starting point for further research into their functions using genetic or other approaches. These findings should significantly improve the understanding of the molecular mechanisms involved in salt tolerance of sugar beet plants.

Balancing salinity stress responses in halophytes and non-halophytes: a comparison between Thellungiella and Arabidopsis thaliana

2013 ◽  
Vol 40 (9) ◽  
pp. 819 ◽  
Author(s):  
Dorothea Bartels ◽  
Challabathula Dinakar
Keyword(s):  
Arabidopsis Thaliana ◽  
Salt Tolerance ◽  
Salinity Tolerance ◽  
Stress Responses ◽  
Molecular Mechanisms ◽  
Light Stress ◽  
Stress Factors ◽  
Natural Environments ◽  
Terrestrial Plants ◽  
Abiotic Stress Factors

Salinity is one of the major abiotic stress factors that drastically reduces agricultural productivity. In natural environments salinity often occurs together with other stresses such as dehydration, light stress or high temperature. Plants cope with ionic stress, dehydration and osmotic stress caused by high salinity through a variety of mechanisms at different levels involving physiological, biochemical and molecular processes. Halophytic plants exist successfully in stressful saline environments, but most of the terrestrial plants including all crop plants are glycophytes with varying levels of salt tolerance. An array of physiological, structural and biochemical adaptations in halophytes make them suitable models to study the molecular mechanisms associated with salinity tolerance. Comparative analysis of plants that differ in their abilities to tolerate salinity will aid in better understanding the phenomenon of salinity tolerance. The halophyte Thellungiella salsuginea has been used as a model for studying plant salt tolerance. In this review, T. salsuginea and the glycophyte Arabidopsis thaliana are compared with regards to their biochemical, physiological and molecular responses to salinity. In addition recent developments are presented for improvement of salinity tolerance in glycophytic plants using genes from halophytes.

scholarly journals Genome-Wide Identification of Na+/H+ Antiporter (NHX) Genes in Sugar Beet (Beta vulgaris L.) and Their Regulated Expression under Salt Stress

Genes ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 401 ◽  
Author(s):  
Guo-Qiang Wu ◽  
Jin-Long Wang ◽  
Shan-Jia Li
Keyword(s):  
Salt Stress ◽  
Sugar Beet ◽  
Beta Vulgaris ◽  
Molecular Mechanisms ◽  
Expression Patterns ◽  
Pcr Analysis ◽  
Functional Identification ◽  
Interacting Protein ◽  
Protein Protein Interaction ◽  
Moderate Salinity

Salinity is one of the major environment factors that limits the growth of plants and the productivity of crops worldwide. It has been shown that Na+ transporters play a central role in salt tolerance and development of plants. The objective of this study was to identify Na+/H+ antiporter (NHX) genes and investigate their expression patterns in sugar beet (Beta vulgaris L.) subjected to various concentrations of NaCl. A total of five putative NHX genes were identified and distributed on four chromosomes in sugar beet. Phylogenetic analysis revealed that these BvNHX genes are grouped into three major classes, viz Vac- (BvNHX1, -2 and -3), Endo- (BvNHX4), and PM-class NHX (BvNHX5/BvSOS1), and within each class the exon/intron structures are conserved. The amiloride-binding site is found in TM3 at N-terminus of Vac-class NHX proteins. Protein-protein interaction (PPI) prediction suggested that only BvNHX5 putatively interacts with calcineurin B-like proteins (CBL) and CBL-interacting protein kinases (CIPK), implying it might be the primary NHX involved in CBL-CIPK pathway under saline condition. It was also found that BvNHX5 contains one abscisic acid (ABA)-responsive element (ABRE), suggesting that BvNHX5 might be involved in ABA signal responsiveness. Additionally, the qRT-PCR analysis showed that all the BvNHX genes in both roots and leaves are significantly up-regulated by salt, and the transcription levels under high salinity are significantly higher than those under either low or moderate salinity. Taken together, this work gives a detailed overview of the BvNHX genes and their expression patterns under salt stress. Our findings also provide useful information for elucidating the molecular mechanisms of Na+ homeostasis and further functional identification of the BvNHX genes in sugar beet.

scholarly journals Differential Expression of Multiple Disease-Related Protein Groups Induced by Valproic Acid in Human SH-SY5Y Neuroblastoma Cells

2020 ◽  
Vol 10 (8) ◽  
pp. 545 ◽  
Author(s):  
Tsung-Ming Hu ◽  
Hsiang-Sheng Chung ◽  
Lieh-Yung Ping ◽  
Shih-Hsin Hsu ◽  
Hsin-Yao Tsai ◽  
...  
Keyword(s):  
Vitamin D ◽  
Valproic Acid ◽  
Differential Expression ◽  
Vitamin D Receptor ◽  
Ribosome Biogenesis ◽  
Molecular Mechanisms ◽  
Neuroblastoma Cells ◽  
Absolute Quantitation ◽  
Signaling Systems ◽  
Isobaric Tags

Valproic acid (VPA) is a multifunctional medication used for the treatment of epilepsy, mania associated with bipolar disorder, and migraine. The pharmacological effects of VPA involve a variety of neurotransmitter and cell signaling systems, but the molecular mechanisms underlying its clinical efficacy is to date largely unknown. In this study, we used the isobaric tags for relative and absolute quantitation shotgun proteomic analysis to screen differentially expressed proteins in VPA-treated SH-SY5Y cells. We identified changes in the expression levels of multiple proteins involved in Alzheimer’s disease, Parkinson’s disease, chromatin remodeling, controlling gene expression via the vitamin D receptor, ribosome biogenesis, ubiquitin-mediated proteolysis, and the mitochondrial oxidative phosphorylation and electron transport chain. Our data indicate that VPA may modulate the differential expression of proteins involved in mitochondrial function and vitamin D receptor-mediated chromatin transcriptional regulation and proteins implicated in the pathogenesis of neurodegenerative diseases.

scholarly journals MnFtz-f1 Is Required for Molting and Ovulation of the Oriental River Prawn Macrobrachium nipponense

2021 ◽  
Vol 12 ◽  
Author(s):  
Huwei Yuan ◽  
Wenyi Zhang ◽  
Yin Fu ◽  
Sufei Jiang ◽  
Yiwei Xiong ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Significant Inhibition ◽  
Pcr Analysis ◽  
Base Pairs ◽  
Regulatory Relationship ◽  
Macrobrachium Nipponense ◽  
Reading Frame ◽  
Starting Point ◽  
Oriental River Prawn

Molting and ovulation are the basic processes responsible for the growth and reproduction of Macrobrachium nipponense; however, the molecular mechanisms of molting and ovulation in M. nipponense are poorly understood. The present study aimed to use MnFtz-f1 as the starting point to study the molting and ovulation phenomena in M. nipponense at the molecular level. The full-length MnFtz-f1 cDNA sequence was 2,198 base pairs (bp) in length with an open reading frame of 1,899 bp encoding 632 amino acids. Quantitative real-time PCR analysis showed that MnFtz-f1 was highly expressed in the ovary at the cleavage stage and on the fifth day after hatching. In vivo administration of 20-hydroxyecdysone (20E) showed that 20E effectively inhibited the expression of the MnFtz-f1 gene, and the silencing of the MnFtz-f1 gene reduced the content of 20E in the ovary. In situ hybridization (ISH) analysis revealed the localization of MnFtz-f1 in the ovary. Silencing of MnFtz-f1 by RNA interference (RNAi) resulted in significant inhibition of the expression of the vitellogenin (Vg), Spook, and Phantom genes, thus confirming that MnFtz-f1 had a mutual regulatory relationship with Vg, Spook, and Phantom. After RNAi, the molting frequency and ovulation number of M. nipponense decreased significantly, which demonstrated that MnFtz-f1 played a pivotal role in the process of molting and ovulation.

scholarly journals Physiological and Proteomic Analysis of Different Molecular Mechanisms of Sugar Beet Response to Acidic and Alkaline pH Environment

2021 ◽  
Vol 12 ◽  
Author(s):  
Gui Geng ◽  
Gang Wang ◽  
Piergiorgio Stevanato ◽  
Chunhua Lv ◽  
Qiuhong Wang ◽  
...  
Keyword(s):  
Sugar Beet ◽  
Soil Ph ◽  
Proteomic Analysis ◽  
Molecular Mechanisms ◽  
Soluble Sugar ◽  
Acid Stress ◽  
Pcr Analysis ◽  
Alkaline Ph ◽  
Growth Status ◽  
Leaves And Roots

Soil pH is a major constraint to crop plant growth and production. Limited data are available on sugar beet growth status under different pH conditions. In this study, we analyzed the growth status and phenotype of sugar beet under pH 5, pH 7.5, and pH 9.5. It was found that the growth of sugar beet was best at pH 9.5 and worst at pH 5. The activities of superoxide dismutase (SOD) and peroxidase (POD) in leaves and roots increased as pH decreased from 9.5 to 5. Moreover, compared with pH 9.5, the levels of soluble sugar and proline in leaves increased significantly at pH 5. To explore the mechanisms of sugar beet response to different soil pH environments, we hypothesized that proteins play an important role in plant response to acidic and alkaline pH environment. Thus, the proteome changes in sugar beet modulated by pH treatment were accessed by TMT-based quantitative proteomic analysis. A total of three groups of differentially expressed proteins (DEPs) (pH 5 vs. pH 7.5, pH 9.5 vs. pH7.5 and pH 5 vs. pH 9.5) were identified in the leaves and roots of sugar beet. Several key proteins related to the difference of sugar beet response to acid (pH 5) and alkaline (pH 9.5) and involved in response to acid stress were detected and discussed. Moreover, based on proteomics results, QRT-PCR analysis confirmed that expression levels of three N transporters (NTR1, NRT2.1, and NRT2.5) in roots were relatively high under alkaline conditions (pH 9.5) compared with pH 5 or pH 7.5. The total nitrogen content of pH 9.5 in sugar beet was significantly higher than that of pH 7.5 and pH 5. These studies increase our understanding of the molecular mechanism of sugar beet response to different pH environments.

scholarly journals What Makes the Wood? Exploring the Molecular Mechanisms of Xylem Acclimation in Hardwoods to an Ever-Changing Environment

Forests ◽  
2019 ◽  
Vol 10 (4) ◽  
pp. 358 ◽  
Author(s):  
Christian Eckert ◽  
Shayla Sharmin ◽  
Aileen Kogel ◽  
Dade Yu ◽  
Lisa Kins ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Global Climate ◽  
Wood Formation ◽  
Stress Factors ◽  
Water Conductivity ◽  
Cellular Processes ◽  
Abiotic Stress Factors ◽  
Limiting Nutrient ◽  
Near Future ◽  
Sessile Organisms

Wood, also designated as secondary xylem, is the major structure that gives trees and other woody plants stability for upright growth and maintains the water supply from the roots to all other plant tissues. Over recent decades, our understanding of the cellular processes of wood formation (xylogenesis) has substantially increased. Plants as sessile organisms face a multitude of abiotic stresses, e.g., heat, drought, salinity and limiting nutrient availability that require them to adjust their wood structure to maintain stability and water conductivity. Because of global climate change, more drastic and sudden changes in temperature and longer periods without precipitation are expected to impact tree productivity in the near future. Thus, it is essential to understand the process of wood formation in trees under stress. Many traits, such as vessel frequency and size, fiber thickness and density change in response to different environmental stimuli. Here, we provide an overview of our current understanding of how abiotic stress factors affect wood formation on the molecular level focussing on the genes that have been identified in these processes.

scholarly journals Quantitative Proteomic and Microcystin Production Response of Microcystis aeruginosa to Phosphorus Depletion

2021 ◽  
Vol 9 (6) ◽  
pp. 1183
Author(s):  
Nian Wei ◽  
Lirong Song ◽  
Nanqin Gan
Keyword(s):  
Microcystis Aeruginosa ◽  
Molecular Mechanisms ◽  
Phosphorus Limitation ◽  
Cyanobacterial Blooms ◽  
Metabolic Processes ◽  
Absolute Quantitation ◽  
Nitrogen And Phosphorus ◽  
Microcystis Blooms ◽  
Isobaric Tags ◽  
Phosphorus Depletion

Microcystis blooms are the most widely distributed and frequently occurring cyanobacterial blooms in freshwater. Reducing phosphorus is suggested to be effective in mitigating cyanobacterial blooms, while the underlying molecular mechanisms are yet to be elucidated. In the present study, isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics was employed to study the effects of phosphorus depletion on Microcystis aeruginosa FACHB-905. The production of microcystins (MCs), a severe hazard of Microcystis blooms, was also analyzed. In total, 230 proteins were found to be differentially abundant, with 136 downregulated proteins. The results revealed that, upon phosphorus limitation stress, Microcystis aeruginosa FACHB-905 raised the availability of phosphorus primarily by upregulating the expression of orthophosphate transport system proteins, with no alkaline phosphatase producing ability. Phosphorus depletion remarkably inhibited cell growth and the primary metabolic processes of Microcystis, including transcription, translation and photosynthesis, with structures of photosystems remaining intact. Moreover, expression of nitrogen assimilation proteins was downregulated, while proteins involved in carbon catabolism were significantly upregulated, which was considered beneficial for the intracellular balance among carbon, nitrogen and phosphorus. The expression of MC synthetase was not significantly different upon phosphorus depletion, while MC content was significantly suppressed. It is assumed that phosphorus depletion indirectly regulates the production of MC by the inhibition of metabolic processes and energy production. These results contribute to further understanding of the influence mechanisms of phosphorus depletion on both biological processes and MC production in Microcystis cells.

scholarly journals An Insight into the Abiotic Stress Responses of Cultivated Beets (Beta vulgaris L.)

Plants ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 12
Author(s):  
Seher Yolcu ◽  
Hemasundar Alavilli ◽  
Pushpalatha Ganesh ◽  
Muhammad Asif ◽  
Manu Kumar ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Abiotic Stress ◽  
Beta Vulgaris ◽  
Stress Responses ◽  
Abiotic Stresses ◽  
Animal Feed ◽  
Growth Yield ◽  
Growth Period ◽  
Stress Factors ◽  
Abiotic Stress Factors

Cultivated beets (sugar beets, fodder beets, leaf beets, and garden beets) belonging to the species Beta vulgaris L. are important sources for many products such as sugar, bioethanol, animal feed, human nutrition, pulp residue, pectin extract, and molasses. Beta maritima L. (sea beet or wild beet) is a halophytic wild ancestor of all cultivated beets. With a requirement of less water and having shorter growth period than sugarcane, cultivated beets are preferentially spreading from temperate regions to subtropical countries. The beet cultivars display tolerance to several abiotic stresses such as salt, drought, cold, heat, and heavy metals. However, many environmental factors adversely influence growth, yield, and quality of beets. Hence, selection of stress-tolerant beet varieties and knowledge on the response mechanisms of beet cultivars to different abiotic stress factors are most required. The present review discusses morpho-physiological, biochemical, and molecular responses of cultivated beets (B. vulgaris L.) to different abiotic stresses including alkaline, cold, heat, heavy metals, and UV radiation. Additionally, we describe the beet genes reported for their involvement in response to these stress conditions.

scholarly journals Combination of transcriptome sequencing and iTRAQ proteome reveals the molecular mechanisms determining petal shape in herbaceous peony (Paeonia lactiflora Pall.)

2018 ◽  
Vol 38 (6) ◽  
Author(s):  
Yanqing Wu ◽  
Yuhan Tang ◽  
Yu Jiang ◽  
Daqiu Zhao ◽  
Jiali Shang ◽  
...  
Keyword(s):  
Transcriptome Sequencing ◽  
Molecular Mechanisms ◽  
Differentially Expressed ◽  
Paeonia Lactiflora ◽  
Absolute Quantitation ◽  
Herbaceous Peony ◽  
Polymerase Chain ◽  
Petal Shape ◽  
Isobaric Tags ◽  
Rapid Amplification

The molecular mechanisms controlling petal shape in a herbaceous peony, Paeonia lactiflora Pall., a popular high-grade cut flower worldwide, remain unclear. Here, we selected inner and outer petals from P. lactiflora ‘ZiFengyu’ with an anemone type as the study object. Using transcriptome sequencing and isobaric tags for relative and absolute quantitation proteome, 979 differentially expressed genes and 266 differentially expressed proteins were detected within the inner and outer petals. Of these, the present study identified a key gene APETALA2 that regulates flower shape development. In addition, we obtained a 1935 bp full-length cDNA sequence of APETALA2 by rapid amplification of cDNA ends amplification. Through further validation using quantitative real-time polymerase chain reaction and Western blot analysis, APETALA2 showed a markedly higher expression in outer than that in inner petals. Therefore, the present study indicates that the increased expression of APETALA2 contributes to the formation of petals in P. lactiflora.

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