scholarly journals New Insights into the Role of Histone Changes in Aging

2020 ◽  
Vol 21 (21) ◽  
pp. 8241
Author(s):  
Sun-Ju Yi ◽  
Kyunghwan Kim

Aging is the progressive decline or loss of function at the cellular, tissue, and organismal levels that ultimately leads to death. A number of external and internal factors, including diet, exercise, metabolic dysfunction, genome instability, and epigenetic imbalance, affect the lifespan of an organism. These aging factors regulate transcriptome changes related to the aging process through chromatin remodeling. Many epigenetic regulators, such as histone modification, histone variants, and ATP-dependent chromatin remodeling factors, play roles in chromatin reorganization. The key to understanding the role of gene regulatory networks in aging lies in characterizing the epigenetic regulators responsible for reorganizing and potentiating particular chromatin structures. This review covers epigenetic studies on aging, discusses the impact of epigenetic modifications on gene expression, and provides future directions in this area.

2020 ◽  
Author(s):  
Benjamin Ng ◽  
Anissa A. Widjaja ◽  
Sivakumar Viswanathan ◽  
Jinrui Dong ◽  
Sonia P. Chothani ◽  
...  

AbstractGenetic loss of function (LOF) in IL11RA infers IL11 signaling as important for fertility, fibrosis, inflammation and craniosynostosis. The impact of genetic LOF in IL11 has not been characterized. We generated IL11-knockout (Il11-/-) mice, which are born in normal Mendelian ratios, have normal hematological profiles and are protected from bleomycin-induced lung fibro-inflammation. Noticeably, baseline IL6 levels in the lungs of Il11-/- mice are lower than those of wild-type mice and are not induced by bleomycin damage, placing IL11 upstream of IL6. Lung fibroblasts from Il11-/- mice are resistant to pro-fibrotic stimulation and show evidence of reduced autocrine IL11 activity. Il11-/- female mice are infertile. Unlike Il11ra1-/- mice, Il11-/- mice do not have a craniosynostosis-like phenotype and exhibit mildly reduced body weights. These data highlight similarities and differences between LOF in IL11 or IL11RA while establishing further the role of IL11 signaling in fibrosis and stromal inflammation.


2020 ◽  
Author(s):  
A. Borri ◽  
P. Palumbo ◽  
A. Singh

AbstractMetabolic networks are known to deal with the chemical reactions responsible to fuel cellular activities with energy and carbon source and, as a matter of fact, to set the growth rate of the cell. To this end, feedback and regulatory networks play a crucial role to handle adaptation to external perturbations and internal noise. In this work, a cellular resource is assumed to be activated at the end of a metabolic pathway, by means of a cascade of transformations. Such a cascade is triggered by the catalytic action of an enzyme that promotes the first transformation. The final product is responsible for the cellular growth rate modulation. This mechanism acts in feedback at the enzymatic level, since the enzyme (as well as all species) is subject to dilution, with the dilution rate set by growth. Enzymatic production is modeled by the occurrence of noisy bursts: a Stochastic Hybrid System is exploited to model the network and to investigate how such noise propagates on growth fluctuations. A major biological finding is that, differently from other models of metabolic pathways disregarding growth-mediated feedback, fluctuations in enzyme levels do not produce only local effects, but propagate up to the final product (hence to the growth rate). Furthermore, the delay provided by the cascade length helps in reducing the impact of enzymatic noise on to growth fluctuations. Analytical results are supported by Monte Carlo simulations.


2017 ◽  
Vol 313 (5) ◽  
pp. F1106-F1115 ◽  
Author(s):  
Marie-Lyne Fillion ◽  
Jasmine El Andalousi ◽  
Fatima Tokhmafshan ◽  
Vasikar Murugapoopathy ◽  
Christine L. Watt ◽  
...  

Odd-skipped related 1 (Osr1) is a transcriptional repressor that plays critical roles in maintaining the mesenchymal stem cell population within the developing kidney. Here, we report that newborn pups with a heterozygous null mutation in Osr1 exhibit a 21% incidence of vesicoureteric reflux and have hydronephrosis and urinary tract duplications. Newborn pups have a short intravesical ureter, resulting in a less competent ureterovesical junction which arises from a delay in urinary tract development. We describe a new domain of Osr1 expression in the ureteral mesenchyme and within the developing bladder in the mouse. OSR1 was sequenced in 186 children with primary vesicoureteric reflux, and 17 have single nucleotide polymorphisms. Fifteen children have a common synonymous variant, rs12329305 , one child has a rare nonsynonymous variant, rs3440471 , and one child has a rare 5′-UTR variant, rs45535040 . The impact of these SNPs is not clear; therefore, the role of OSR1 in human disease remains to be elucidated. Osr1 is a candidate gene implicated in the pathogenesis of vesicoureteric reflux and congenital abnormalities of the kidney and urinary tract in mice.


2014 ◽  
Vol 33 (1) ◽  
pp. 283-291 ◽  
Author(s):  
HAI-TAO HUANG ◽  
SHAO-MU CHEN ◽  
LIANG-BIN PAN ◽  
JIE YAO ◽  
HAI-TAO MA

Author(s):  
Yanan Li ◽  
Han Gong ◽  
Pan Wang ◽  
Yu Zhu ◽  
Hongling Peng ◽  
...  

AbstractDisordered chromatin remodeling regulation has emerged as an essential driving factor for cancers. Imitation switch (ISWI) family are evolutionarily conserved ATP-dependent chromatin remodeling complexes, which are essential for cellular survival and function through multiple genetic and epigenetic mechanisms. Omics sequencing and a growing number of basic and clinical studies found that ISWI family members displayed widespread gene expression and genetic status abnormalities in human cancer. Their aberrant expression is closely linked to patient outcome and drug response. Functional or componential alteration in ISWI-containing complexes is critical for tumor initiation and development. Furthermore, ISWI-non-coding RNA regulatory networks and some non-coding RNAs derived from exons of ISWI member genes play important roles in tumor progression. Therefore, unveiling the transcriptional regulation mechanism underlying ISWI family sparked a booming interest in finding ISWI-based therapies in cancer. This review aims at describing the current state-of-the-art in the role of ISWI subunits and complexes in tumorigenesis, tumor progression, immunity and drug response, and presenting deep insight into the physiological and pathological implications of the ISWI transcription machinery in cancers.


2020 ◽  
Vol 4 (Supplement_1) ◽  
Author(s):  
Tiffany K Miles ◽  
Melody Lyn Allensworth ◽  
Ana Rita Silva Moreira ◽  
Angela Katherine Odle ◽  
Anessa Haney ◽  
...  

Abstract Malnutrition causes dysregulated pituitary function, which may in part be due to lowered leptin signals. We showed that loss of somatotrope leptin receptors in mice reduces growth hormone (GH) secretion and promotes metabolic dysfunction in adults. More recently, we showed that adult male mice fasted for 12 or 24 hours also had significantly lowered GH secretion, which correlated with a 94% reduction in serum leptin. Malnutrition may result in changes in the leptin surge during neonatal development in rodents or the third trimester in humans. Severe (50% reduction) maternal undernutrition (1) blunted the surge in rodents, however less severe undernutrition (30% reduction) caused a premature leptin surge (2). Both studies reported that pups showed metabolic dysfunction as adults. In our studies of leptin regulation of somatotropes, we tested the more severe calorie restriction model and discovered significant pup and maternal loss. We then elected to develop a milder undernutrition model, which may relate more closely to society’s nutritional challenges with the objective of determining if the timing of the leptin surge had shifted. This maternal undernutrition study consisted of dams fed ad libitum (fed) and pair fed dams receiving 20% reduced caloric intake (undernourished). Undernutrition started at E15 and ended with sacrifice at various times during the leptin surge. While nursing, the undernourished dams did not lose weight, but their weight gain was reduced to 45% of that of fed dams. We have collected data from 177 neonatal pups and 19 fed or undernourished dams. At PND5 and PND10, pups from undernourished moms weighed significantly less (16.3% and 21.8%) than pups from fed dams. Additionally, weanlings (PND 21) from underfed dams exhibited a 28.04% reduction in weight and an 8.43% reduction in nose to anus length (p = 0.0005) compared to pups from control fed dams. The timing of the leptin surge in pups from fed dams was normal in female pups. However, pups from mildly undernourished dams had “premature” leptin surges that peaked 2 days earlier than normal. Ongoing studies are testing metabolic function in these mice, as adults, to determine their sensitivity to a 45% high fat diet and the impact on somatotrope functions. This model demonstrates that even a 20% reduction in nutrition will negatively impact offspring and shift the timing of the leptin surge. 1. Delahaye F, Breton C, Risold PY, Enache M, Dutriez-Casteloot I, Laborie C, Lesage J, Vieau D. Maternal perinatal undernutrition drastically reduces postnatal leptin surge and affects the development of arcuate nucleus proopiomelanocortin neurons in neonatal male rat pups. Endocrinology 2008; 149:470-475 2. Yura S, Itoh H, Sagawa N, Yamamoto H, Masuzaki H, Nakao K, Kawamura M, Takemura M, Kakui K, Ogawa Y. Role of premature leptin surge in obesity resulting from intrauterine undernutrition. Cell metabolism 2005; 1:371-378


2018 ◽  
Author(s):  
Sergio Casas-Tintó ◽  
Alberto Ferrús

AbstractBeyond its well characterized role in muscle contraction,DrosophilaTroponin I (TnI) is expressed in other cell types where it plays a role in proliferation control. TnI traffics between the nucleus and the cytoplasm through a sumoylation-dependent mechanism. We address here the role of TnI in the cytoplasm. TnI accumulates in the apical region of epidermal cells and neuroblasts. TnI helps to localize and co-immunoprecipitates with Par-3/Bazooka and with disc large (Dlg), two components of the apico-basal polarity system. By contrast, Scribbled is not affected by TnI depletion. In neuroblasts, TnI is required for the polar localization of Miranda while non-polar Dlg is not affected. TnI loss-of-function triggers genome instability, cell apoptosis and extrusion from wing disc epithelia. However, rescue from apoptosis by p35 does not prevent genome instability demonstrating that both features, apoptosis and genome instability, are mechanistically independent. While PI3K is known to contribute to apico-basal polarity of epithelia in vertebrates,DrosophilaPI3K depletion alters neither the apical localization of TnI or Par3/Bazooka, nor the basal localization of Dlg. However, the overexpression of PI3K prevents the polarity defects caused by TnI depletion. Thus, TnI binds certain apico-basal polarity signals in a cell type dependent context, and it unveils a hitherto unsuspected diversity of mechanisms to allocate cell polarity factors.


Blood ◽  
2020 ◽  
Vol 136 (12) ◽  
pp. 1394-1401 ◽  
Author(s):  
Xiaojing Yue ◽  
Anjana Rao

Abstract Vitamin C serves as a cofactor for Fe(II) and 2-oxoglutarate–dependent dioxygenases including TET family enzymes, which catalyze the oxidation of 5-methylcytosine into 5-hydroxymethylcytosine and further oxidize methylcytosines. Loss-of-function mutations in epigenetic regulators such as TET genes are prevalent in hematopoietic malignancies. Vitamin C deficiency is frequently observed in cancer patients. In this review, we discuss the role of vitamin C and TET proteins in cancer, with a focus on hematopoietic malignancies, T regulatory cells, and other immune system cells.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Benjamin Ng ◽  
Anissa A. Widjaja ◽  
Sivakumar Viswanathan ◽  
Jinrui Dong ◽  
Sonia P. Chothani ◽  
...  

AbstractLoss of function (LOF) in IL11RA infers IL11 signaling as important for fertility, fibrosis, inflammation and incompletely penetrant craniosynostosis. The impact of LOF in IL11 has not been characterized. We generated IL11 knockout (Il11−/−) mice that are born in expected ratios and have normal hematological profiles. Lung fibroblasts from Il11−/− mice are resistant to pro-fibrotic stimulation with TGFβ1. Following bleomycin-induced lung injury, Il11−/− mice are protected from pulmonary fibrosis and exhibit lesser ERK, STAT3 and NF-kB activation, reduced Il1b, Timp1, Ccl2 and diminished IL6 expression, both at baseline and after injury: placing Il11 activity upstream of IL6 in this model. Il11−/− female mice are infertile. Unlike Il11ra1−/− mice, Il11−/− mice do not have craniosynostosis, have normal long bone mass and reduced body weights. These data further establish the role of IL11 signaling in lung fibrosis while suggesting that bone development abnormalities can be associated with mutation of IL11RA but not IL11, which may have implications for therapeutic targeting of IL11 signaling.


2019 ◽  
Author(s):  
Dale Bryant ◽  
Marian Seda ◽  
Emma Peskett ◽  
Constance Maurer ◽  
Gideon Pomeranz ◽  
...  

AbstractMutations in the SNX14 gene cause spinocerebellar ataxia, autosomal recessive 20 (SCAR20) in both humans and dogs. SCAR20 is understood to involve subcellular disruption to autophagy and lipid metabolism. Previously reported studies on the phenotypic consequences of SNX14 mutations have been limited to in vitro investigation of patient-derived dermal fibroblasts, laboratory engineered cell lines and developmental analysis of zebrafish morphants. In addition, studies have investigated the biochemical roles of SNX14 homologues Snz (Drosophila) and Mdm1 (yeast) which have demonstrated an important role during lipid biogenesis. This study investigates the impact of constitutive Snx14 mutations in laboratory species: mice and zebrafish. Loss of SNX14 in mice was found to be embryonic lethal around mid-gestation. This is due to placental pathology that involves severe disruption to syncytiotrophoblast cell differentiation. Zebrafish carrying a homozygous, maternal zygotic snx14 genetic loss-of-function mutation contrasts with other vertebrates, being both viable and anatomically normal. Whilst no obvious behavioural effects were observed, elevated levels of neutral lipids and phospholipids resemble previously reported effects on lipid homeostasis in other species. The biochemical role of SNX14 therefore appears largely conserved through evolution while the overall consequences of loss of function varies considerably between species. New mouse and zebrafish models therefore provide valuable insights into the functional importance of SNX14 with distinct opportunities for investigating its cellular and metabolic function in vivo.


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