scholarly journals Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an Escape Strategy of Deepwater Rice during Partially Submerged Stress

Metabolites ◽  
2020 ◽  
Vol 10 (2) ◽  
pp. 68 ◽  
Author(s):  
Atsushi Fukushima ◽  
Takeshi Kuroha ◽  
Keisuke Nagai ◽  
Yoko Hattori ◽  
Makoto Kobayashi ◽  
...  

Rice varieties that can survive under submergence conditions respond to flooding either by enhancing internode elongation or by quiescence of shoot elongation. Despite extensive efforts to identify key metabolites triggered by complete submergence of rice possessing SUBMERGENCE 1 (SUB1) locus, metabolic responses of internode elongation of deepwater rice governed by the SNORKEL 1 and 2 genes remain elusive. This study investigated specific metabolomic responses under partial submergence (PS) to deepwater- (C9285) and non-deepwater rice cultivars (Taichung 65 (T65)). In addition, we examined the response in a near-isogenic line (NIL-12) that has a C9285 genomic fragment on chromosome 12 introgressed into the genetic background of T65. Under short-term submergence (0–24 h), metabolite profiles of C9285, NIL-12, and T65 were compared to extract significantly changed metabolites in deepwater rice under PS conditions. Comprehensive metabolite and phytohormone profiling revealed increases in metabolite levels in the glycolysis pathway in NIL-12 plants. Under long-term submergence (0–288 h), we found decreased amino acid levels. These metabolomic changes were opposite when compared to those in flood-tolerant rice with SUB1 locus. Auxin conjugate levels related to stress response decreased in NIL-12 lines relative to T65. Our analysis helped clarify the complex metabolic reprogramming in deepwater rice as an escape strategy.

2012 ◽  
Vol 39 (2) ◽  
pp. 137 ◽  
Author(s):  
Annamalai Anandan ◽  
Govindrajan Rajiv ◽  
Akkisetty Ramarao ◽  
Muthu Prakash

Rice plants are damaged during floods by complete or partial submergence. The pattern of expression of rice plant varies with different flood regimes. Accordingly, the morphological and physiological responses of rice genotypes were studied in field and pot experiments under different flood regimes. Wide genetic base lines of Oryza sativa and sub 1 introgressed submergence tolerant were compared in field experiments using principle component analysis. Further, based on internode elongation pattern, two genotypes – Bodikaburi and Pokkali – were selected for a pot experiment to find more on elongation pattern of internodes under different flood regimes. Short-term submergence in minimal water, elongation of blade, sheath, leaf area, DW, number of nodes in primary stem and survival present showed strong positive relationship with shoot length. Number of tillers, leaf area and DW were more affected and decreased during submergence than its non-submergence counterpart. Under different flooding regimes, cvv Bodikaburi and Pokkali exhibited different behaviour in the elongation pattern of the shoot. Partial submergence accelerated elongation of all internodes whereas complete submergence accelerated the top internode. Enhancement of shoot elongation during submergence in water is an escape strategy adopted by rice to resume aerobic metabolism and to improve carbon fixation. This escape strategy varies among genotypes with respect to different flooding regimes. Therefore, breeders should be aware of breeding of rice plants with suitable architecture for different flood- prone environments.


2021 ◽  
Vol 13 (12) ◽  
pp. 6660
Author(s):  
Marco Ferrante ◽  
Anuma Dangol ◽  
Shoshana Didi-Cohen ◽  
Gidon Winters ◽  
Vered Tzin ◽  
...  

Vachellia (formerly Acacia) trees are native to arid environments in Africa and the Arabian Peninsula, where they often support the local animal and plant communities acting as keystone species. The aim of this study was to examine whether oil pollution affected the central metabolism of the native keystone trees Vachellia tortilis (Forssk.) and V. raddiana (Savi), as either adults or seedlings. The study was conducted in the Evrona Nature Reserve, a desert ecosystem in southern Israel where two major oil spills occurred in 1975 and in 2014. Leaf samples were collected to analyze the central metabolite profiles from oil-polluted and unpolluted adult trees and from Vachellia seedlings growing in oil-polluted and unpolluted soils in an outdoor setup. We found that oil pollution had a stronger effect on one-year-old seedlings than on adult trees, reducing the levels of amino acids, sugars, and organic acids. While adult trees are mildly affected by oil pollution, the effects on young seedlings can cause a long-term reduction in the population of these keystone desert trees, ultimately threatening this entire ecosystem.


Cancers ◽  
2021 ◽  
Vol 13 (14) ◽  
pp. 3388
Author(s):  
Mona Alharbi ◽  
Andrew Lai ◽  
Shayna Sharma ◽  
Priyakshi Kalita-de Croft ◽  
Nihar Godbole ◽  
...  

Hypoxia is a key regulator of cancer progression and chemoresistance. Ambiguity remains about how cancer cells adapt to hypoxic microenvironments and transfer oncogenic factors to surrounding cells. In this study, we determined the effects of hypoxia on the bioactivity of sEVs in a panel of ovarian cancer (OvCar) cell lines. The data obtained demonstrate a varying degree of platinum resistance induced in OvCar cells when exposed to low oxygen tension (1% oxygen). Using quantitative mass spectrometry (Sequential Window Acquisition of All Theoretical Fragment Ion Mass Spectra, SWATH) and targeted multiple reaction monitoring (MRM), we identified a suite of proteins associated with glycolysis that change under hypoxic conditions in cells and sEVs. Interestingly, we identified a differential response to hypoxia in the OvCar cell lines and their secreted sEVs, highlighting the cells’ heterogeneity. Proteins are involved in metabolic reprogramming such as glycolysis, including putative hexokinase (HK), UDP-glucuronosyltransferase 1–6 (UD16), and 6-phosphogluconolactonase (6 PGL), and their presence correlates with the induction of platinum resistance. Furthermore, when normoxic cells were exposed to sEVs from hypoxic cells, platinum-resistance increased significantly (p < 0.05). Altered chemoresistance was associated with changes in glycolysis and fatty acid synthesis. Finally, sEVs isolated from a clinical cohort (n = 31) were also found to be enriched in glycolysis-pathway proteins, especially in patients with recurrent disease. These data support the hypothesis that hypoxia induces changes in sEVs composition and bioactivity that confers carboplatin resistance on target cells. Furthermore, we propose that the expression of sEV-associated glycolysis-pathway proteins is predictive of ovarian cancer recurrence and is of clinical utility in disease management.


2021 ◽  
Author(s):  
Omkar B Ijare ◽  
Shashank Hambarde ◽  
Fabio Henrique Brasil da Costa ◽  
Sophie Lopez ◽  
Martyn A Sharpe ◽  
...  

Abstract Background We postulate that meningiomas undergo distinct metabolic reprogramming in tumorigenesis and unravelling their metabolic phenotypes provide new therapeutic insights. Glutamine catabolism is key to the growth and proliferation of tumors. Here, we investigated the metabolomics of freshly resected meningiomas and glutamine metabolism in patient-derived meningioma cells. Methods 1H NMR spectroscopy of tumor tissues from 33 meningioma patients was used to differentiate the metabolite profiles of grade-I and grade-II meningiomas. Glutamine metabolism was examined using 13C/ 15N glutamine tracer, in five patient-derived meningioma cells. Results Alanine, lactate, glutamate, glutamine, and glycine were predominantly elevated only in grade-II meningiomas by 74%, 76%, 35%, 75% and 33% respectively, with alanine, and glutamine being statistically significant (p ≤ 0.02). 13C/ 15N glutamine tracer experiments revealed that both grade-I and -II meningiomas actively metabolize glutamine to generate various key carbon intermediates including alanine and proline that are necessary for the tumor growth. Also, it is shown that glutaminase (GLS1) inhibitor, CB-839 is highly effective in downregulating glutamine metabolism and decreasing proliferation in meningioma cells. Conclusion Alanine and glutamine/glutamate are mainly elevated in grade-II meningiomas. Grade-I meningiomas possess relatively higher glutamine metabolism providing carbon/nitrogen for the biosynthesis of key nonessential amino acids. GLS1 inhibitor (CB-839) would be very effective in downregulating glutamine metabolic pathways in grade-I meningiomas leading to decreased cellular proliferation.


Blood ◽  
2017 ◽  
Vol 130 (Suppl_1) ◽  
pp. 709-709
Author(s):  
Bin Guo ◽  
Xinxin Huang ◽  
Hal E. Broxmeyer

Abstract Allogeneic hematopoietic cell transplantation (HCT) is widely used as a life-saving treatment for malignant and non-malignant blood disorders. Hematopoietic stem cells (HSCs) are a major contributing cell population for a successful HCT. While cord blood (CB) is an acceptable source of HSCs for clinical HCTbecause of its many advantages including prompt availability, lower incidence of GvHD and virus infection, CB HCT is usually associated with slower time to engraftment especially in adult patients when compared with other cell sources; this is partly due to limiting numbers of HSCs in single cord units. In order to overcome this limitation, ex vivo expansion of CB HSCs has been evaluated in preclinical and clinical studies for improvement of the clinical efficacy of CB HCT. While a number of different ways have been evaluated to ex-vivo expand human HSCs, little is known about the mechanisms involved, and whether efficient expansion of CB HSCs could be achieved by metabolic reprogramming. In a compound screen for potential candidates which could promote ex vivo expansion of CB HSCs, we found that PPARγ antagonist GW9662 treatment significantly enhanced ex vivo expansion of CB phenotypic HSCs (~5 fold) and progenitor cells (HPCs) (~6.8 fold) in RPMI-1640 medium containing 10% fetal bovine serum (FBS) and cytokines (SCF, FL, TPO) when compared with vehicle control. GW9662 significantly increased numbers of CB colony-forming unit (CFU) granulocyte/macrophage (GM) (~1.8 fold) and granulocyte, erythroid, macrophage, megakaryocyte (CFU-GEMM) (~3.2 fold) progenitors after 4 days ex vivo culture. To assess whether the ex vivo expanded CB HSCs enhanced by the PPARγ antagonist were functional in vivo, we performed both primary and secondary transplantation in immunocompromised NSG mice. Engraftment of CB CD34+ cells in primary recipients was significantly increased (~3 fold) both in bone marrow (BM) and peripheral blood (PB) by the cultured cells treated with GW9662. The percentages of both myeloid and lymphoid lineages were enhanced in BM of primary recipients transplanted with GW9662-treated CB CD34+ cells. We also transplanted CB CD34+ cells transfected with control shRNA or PPAR γ shRNA into NSG mice, and consistently found that both myeloid and lymphoid chimerism was enhanced in BM of recipients which were infused with PPAR γ shRNA transfected-CD34+ cells compared with control shRNA transfected-CD34+ cells. Long term reconstituting and self-renewing capability of GW9662-treated CB CD34+ cells with both enhanced myeloid and lymphoid chimerism, was confirmed in PB and BM in secondary recipients. Limiting dilution analysis was performed to calculate SCID-repopulating cells (SRC), a measure of the number of functional human HSCs. The SRC frequency of GW9662-cultured CB CD34+ cells was 4 fold greater than that of day 0 uncultured CD34+ cells, and 5 fold increased above that of vehicle-treated CD34+ cells with cytokines alone. To gain mechanistic insight into how PPARγ antagonism enhances expansion of human CB HSCs and HPCs, we performed RNA-seq analysis. Antagonizing PPARγ in CB CD34+ cells resulted in downregulation of a number of differentiation associated genes, including CD38, CD1d, HIC1, FAM20C, DUSP4, DHRS3 and ALDH1A2, which suggests that PPARγ antagonist may maintain stemness of CB CD34+ cells partly by preventing differentiation. Of interest, we found that FBP1, encoding fructose 1, 6-bisphosphatase, a negative regulator of glycolysis, was significantly down-regulated by GW9662, which was further confirmed by RT-PCR, western blot and flow cytometry analysis. GW9662 significantly enhanced glucose metabolism in CB HSCs and HPCs without compromising mitochondrial respiration. Enhanced expansion of CB HSCs by antagonizing PPARγ was totally suppressed by removal of glucose or by inhibition of glycolysis. Importantly, suppression of FBP1 greatly promoted glycolysis and ex vivo expansion of long-term repopulating CB HSCs (~3.2 fold). Overexpression of FBP1 significantly suppressed enhancedexpansion and engraftment of CB HSCs by PPARγ antagonist. Our study demonstrates that PPARγ antagonism drives ex vivo expansion of human CB HSCs and HPCs by switching on FBP1 repressed glucose metabolism and by preventing differentiation. This provides new insight into human HSC self-renewal, and suggests a novel and simple means by which metabolic reprogramming may improve the efficacy of CB HCT. Disclosures No relevant conflicts of interest to declare.


2022 ◽  
Vol 5 (1) ◽  
Author(s):  
Flora Mikaeloff ◽  
Sara Svensson Akusjärvi ◽  
George Mondinde Ikomey ◽  
Shuba Krishnan ◽  
Maike Sperk ◽  
...  

AbstractDespite successful combination antiretroviral therapy (cART), persistent low-grade immune activation together with inflammation and toxic antiretroviral drugs can lead to long-lasting metabolic flexibility and adaptation in people living with HIV (PLWH). Our study investigated alterations in the plasma metabolic profiles by comparing PLWH on long-term cART(>5 years) and matched HIV-negative controls (HC) in two cohorts from low- and middle-income countries (LMIC), Cameroon, and India, respectively, to understand the system-level dysregulation in HIV-infection. Using untargeted and targeted LC-MS/MS-based metabolic profiling and applying advanced system biology methods, an altered amino acid metabolism, more specifically to glutaminolysis in PLWH than HC were reported. A significantly lower level of neurosteroids was observed in both cohorts and could potentiate neurological impairments in PLWH. Further, modulation of cellular glutaminolysis promoted increased cell death and latency reversal in pre-monocytic HIV-1 latent cell model U1, which may be essential for the clearance of the inducible reservoir in HIV-integrated cells.


2020 ◽  
Vol 224 ◽  
pp. 04020
Author(s):  
Zh M Mukhina ◽  
E G Savenko ◽  
T L Korotenko ◽  
I I Suprun ◽  
O. A. Bragina ◽  
...  

Within the framework of this study, the first Russian-Chinese joint program for development of rice varieties with long-term blast resistance was launched on the basis of rice germplasm exchange and the subsequent comprehensive study of the obtained breeding samples, hybridization of Russian and Chinese varieties with specified traits. The genetic diversity of the Chinese rice samples obtained by exchange was studied by biological and morphological traits of plants, taxonomic belonging to a botanical variety, elements of the yield structure, and resistance to lodging. 31 hybrid combinations (F1) from the crossing of Russian and Chinese varieties were used to obtain the BC1 generation. The technologies of cultivation of isolated rice anthers in vitro have been optimized in relation to Chinese genotypes in order to accelerate the genetic stabilization of breeding material obtained from crossing. Phenotyping of Russian and Chinese breeding samples was carried out on the basis of resistance to the local population of the blast pathogen (Magnaporthe grisea (T.T. Hebert) M.E. Barr)), on natural and artificial infectious backgrounds. DNA identification of genes for blast resistance was carried out for the same breeding samples. Based on the experimental data obtained, promising samples were selected - prototypes of new rice varieties.


Weed Science ◽  
1986 ◽  
Vol 34 (1) ◽  
pp. 115-121 ◽  
Author(s):  
Joseph C. Neal ◽  
Walter A. Skroch ◽  
Thomas J. Monaco

Carbon-14-labeled glyphosate [N-(phosphonomethyl)glycine] was foliarly applied to ligustrum (Ligustrum japonicumThunb.) and blue pacific juniper (Juniperus confertaParl. ‘Blue Pacific’) at the following growth stages: cold acclimation, winter dormancy, budbreak, shoot elongation, and termination of the first flush of growth (shoot termination). At shoot elongation juniper plants absorbed 2% of applied14C by 14 days after treatment (DAT). Applications at other growth stages resulted in no significant absorption of14C by junipers. Within 7 DAT the amounts of radioactivity absorbed by ligustrum were significant and depended upon growth stage in the following order: budbreak < shoot termination < shoot elongation. Absorption by overwintered leaves occurred at budbreak but not at elongation or termination. Transport of absorbed14C in ligustrum was primarily acropetal and occurred only in budbreak and flowering treatments. Differences in tolerance to glyphosate between juniper and ligustrum appear to be related to differential absorption. Seasonal differences in ligustrum tolerance also appear to be associated with differences in absorption. Although growth stage affected transport in ligustrum, differential transport does not appear to play a major role in seasonal influences on long-term glyphosate phytotoxicity.


1988 ◽  
Vol 78 (2) ◽  
pp. 209-225 ◽  
Author(s):  
Brian Taylor

AbstractUsing several methods, claims that stem-borers, especially Scirpophaga incertulas (Walker), cause serious crop loss in deepwater rice were tested in Bangladesh. Insecticides were used to control different borer broods. Early season, pre-flood applications reduced infestation, but did not affect yield. One to three mid- to late-season applications of monocrotophos at 250 g a.i./ha significantly reduced infestation and/or whitehead numbers, with yield savings (7-10%) similar to those which earlier workers obtained by applying diazinon 20 times in a season. In each of six years, tiller populations peaked before flooding, then steadily declined until harvest, but stem-borer infestation varied, remaining low until late season in two of the years. In 1981, infestation lower than 24% pre-flood and 42% at harvest did not affect yield. In 1982, eighty-four correlation calculations showed no consistent significant effects of infestation (27-60%, C.V. 40%) on yield (25 000 stems were dissected). Anatomical studies of elongated stems revealed S. incertulas feeding neither causes significant structural damage nor seriously interrupts nutrient flow; also, the passage of a larva through a nodal septum is not detrimental. Irrespective of stem-borer attack, the submerged lower internodes commonly die, the fibrous remains anchor the upper stem, and nodal roots take over nutrient uptake. Studies of panicle-bearing stems (n = 838) showed that, even with 97% stem infestation, most yield loss results from infestation of the terminal internode and is manifested predominantly as whiteheads. In a specific study, 94% whiteheads (n = 205) were associated with terminal internode infestation, where larval feeding in the narrow stem had disrupted food conduction, so preventing grain-filling. The apparent tolerance of S. incertulas by deepwater rice varieties is consistent with their being a primitive group of cultivated rices.


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