Crow-ENN

DNA sequence classification is one of the main research activities in bioinformatics on which, many researchers have worked and are working on it. In bioinformatics, machine learning can be applied for the analysis of genomic sequences like the classification of DNA sequences, comparison of DNA sequences. This article proposes a new hybrid meta-heuristic model called Crow-ENN for leukemia DNA sequences classification. The proposed algorithm is the combination of the Crow Search Algorithm (CSA) and the Elman Neural Network (ENN). DNA sequences of Leukemia are used to train and test the proposed hybrid model. Five other comparable models i.e. Crow-ANN, Crow-BPNN, ANN, BPNN and ENN are also trained and tested on these DNA sequences. The performance of models is evaluated in terms of accuracy and MSE. The overall simulation results show that the proposed model has outperformed all the other five comparable models by attaining the highest accuracy of over 99%. This model may also be used for other classification problems in different fields because it can achieve promising results.

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LogSum + L2 penalized logistic regression model for biomarker selection and cancer classification

Scientific Reports ◽

10.1038/s41598-020-79028-0 ◽

2020 ◽

Vol 10 (1) ◽

Author(s):

Xiao-Ying Liu ◽

Sheng-Bing Wu ◽

Wen-Quan Zeng ◽

Zhan-Jiang Yuan ◽

Hong-Bo Xu

Keyword(s):

Logistic Regression ◽

Regression Model ◽

Logistic Regression Model ◽

Cancer Classification ◽

Classification Problems ◽

Proposed Model ◽

Different Types ◽

Penalized Logistic Regression ◽

Biomarker Selection

AbstractBiomarker selection and cancer classification play an important role in knowledge discovery using genomic data. Successful identification of gene biomarkers and biological pathways can significantly improve the accuracy of diagnosis and help machine learning models have better performance on classification of different types of cancer. In this paper, we proposed a LogSum + L2 penalized logistic regression model, and furthermore used a coordinate decent algorithm to solve it. The results of simulations and real experiments indicate that the proposed method is highly competitive among several state-of-the-art methods. Our proposed model achieves the excellent performance in group feature selection and classification problems.

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Detection of Spam Email by Combining Harmony Search Algorithm and Decision Tree

Engineering, Technology & Applied Science Research ◽

10.48084/etasr.1171 ◽

2017 ◽

Vol 7 (3) ◽

pp. 1713-1718 ◽

Cited By ~ 2

Author(s):

M. Z. Gashti

Keyword(s):

Decision Tree ◽

Search Algorithm ◽

Harmony Search ◽

Harmony Search Algorithm ◽

Detection Systems ◽

Skew Detection ◽

Proposed Model ◽

Key Topics ◽

E Mail

Spam emails is probable the main problem faced by most e-mail users. There are many features in spam email detection and some of these features have little effect on detection and cause skew detection and classification of spam email. Thus, Feature Selection (FS) is one of the key topics in spam email detection systems. With choosing the important and effective features in classification, its performance can be optimized. Selector features has the task of finding a subset of features to improve the accuracy of its predictions. In this paper, a hybrid of Harmony Search Algorithm (HSA) and decision tree is used for selecting the best features and classification. The obtained results on Spam-base dataset show that the rate of recognition accuracy in the proposed model is 95.25% which is high in comparison with models such as SVM, NB, J48 and MLP. Also, the accuracy of the proposed model on the datasets of Ling-spam and PU1 is high in comparison with models such as NB, SVM and LR.

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A Synergic Use of Sentinel-1 and Sentinel-2 Imagery for Complex Wetland Classification Using Generative Adversarial Network (GAN) Scheme

Water ◽

10.3390/w13243601 ◽

2021 ◽

Vol 13 (24) ◽

pp. 3601

Author(s):

Ali Jamali ◽

Masoud Mahdianpari ◽

Fariba Mohammadimanesh ◽

Brian Brisco ◽

Bahram Salehi

Keyword(s):

Anthropogenic Activities ◽

Wetland Classification ◽

Classification Problems ◽

Natural Ecosystems ◽

Generative Adversarial Network ◽

Adversarial Network ◽

Average Accuracy ◽

Proposed Model ◽

Sentinel 2

Due to anthropogenic activities and climate change, many natural ecosystems, especially wetlands, are lost or changing at a rapid pace. For the last decade, there has been increasing attention towards developing new tools and methods for the mapping and classification of wetlands using remote sensing. At the same time, advances in artificial intelligence and machine learning, particularly deep learning models, have provided opportunities to advance wetland classification methods. However, the developed deep and very deep algorithms require a higher number of training samples, which is costly, logistically demanding, and time-consuming. As such, in this study, we propose a Deep Convolutional Neural Network (DCNN) that uses a modified architecture of the well-known DCNN of the AlexNet and a Generative Adversarial Network (GAN) for the generation and classification of Sentinel-1 and Sentinel-2 data. Applying to an area of approximately 370 sq. km in the Avalon Peninsula, Newfoundland, the proposed model with an average accuracy of 92.30% resulted in F-1 scores of 0.82, 0.85, 0.87, 0.89, and 0.95 for the recognition of swamp, fen, marsh, bog, and shallow water, respectively. Moreover, the proposed DCNN model improved the F-1 score of bog, marsh, fen, and swamp wetland classes by 4%, 8%, 11%, and 26%, respectively, compared to the original CNN network of AlexNet. These results reveal that the proposed model is highly capable of the generation and classification of Sentinel-1 and Sentinel-2 wetland samples and can be used for large-extent classification problems.

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Discovery of New Genera Challenges the Subtribal Classification of Tok-Tok Beetles (Coleoptera: Tenebrionidae: Sepidiini)

Insect Systematics and Diversity ◽

10.1093/isd/ixab006 ◽

2021 ◽

Vol 5 (2) ◽

Author(s):

Olivia M Gearner ◽

Marcin J Kamiński ◽

Kojun Kanda ◽

Kali Swichtenberg ◽

Aaron D Smith

Keyword(s):

Dna Sequences ◽

Species Group ◽

Phylogenetic Placement ◽

Darkling Beetles ◽

Species Groups ◽

Taxonomic Groups ◽

Inference Methods ◽

A New Species ◽

Coleoptera Tenebrionidae

Abstract Sepidiini is a speciose tribe of desert-inhabiting darkling beetles, which contains a number of poorly defined taxonomic groups and is in need of revision at all taxonomic levels. In this study, two previously unrecognized lineages were discovered, based on morphological traits, among the extremely speciose genera Psammodes Kirby, 1819 (164 species and subspecies) and Ocnodes Fåhraeus, 1870 (144 species and subspecies), namely the Psammodes spinosus species-group and Ocnodes humeralis species-group. In order to test their phylogenetic placement, a phylogeny of the tribe was reconstructed based on analyses of DNA sequences from six nonoverlapping genetic loci (CAD, wg, COI JP, COI BC, COII, and 28S) using Bayesian and maximum likelihood inference methods. The aforementioned, morphologically defined, species-groups were recovered as distinct and well-supported lineages within Molurina + Phanerotomeina and are interpreted as independent genera, respectively, Tibiocnodes Gearner & Kamiński gen. nov. and Tuberocnodes Gearner & Kamiński gen. nov. A new species, Tuberocnodes synhimboides Gearner & Kamiński sp. nov., is also described. Furthermore, as the recovered phylogenetic placement of Tibiocnodes and Tuberocnodes undermines the monophyly of Molurina and Phanerotomeina, an analysis of the available diagnostic characters for those subtribes is also performed. As a consequence, Phanerotomeina is considered as a synonym of the newly redefined Molurina sens. nov. Finally, spectrograms of vibrations produced by substrate tapping of two Molurina species, Toktokkus vialis (Burchell, 1822) and T. synhimboides, are presented.

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Natural Disasters Intensity Analysis and Classification Based on Multispectral Images Using Multi-Layered Deep Convolutional Neural Network

Sensors ◽

10.3390/s21082648 ◽

2021 ◽

Vol 21 (8) ◽

pp. 2648

Author(s):

Muhammad Aamir ◽

Tariq Ali ◽

Muhammad Irfan ◽

Ahmad Shaf ◽

Muhammad Zeeshan Azam ◽

...

Keyword(s):

Neural Network ◽

Convolutional Neural Network ◽

Natural Disasters ◽

Deep Convolutional Neural Network ◽

Multispectral Images ◽

Learning Techniques ◽

Proposed Model ◽

Disaster Intensity ◽

And Performance

Natural disasters not only disturb the human ecological system but also destroy the properties and critical infrastructures of human societies and even lead to permanent change in the ecosystem. Disaster can be caused by naturally occurring events such as earthquakes, cyclones, floods, and wildfires. Many deep learning techniques have been applied by various researchers to detect and classify natural disasters to overcome losses in ecosystems, but detection of natural disasters still faces issues due to the complex and imbalanced structures of images. To tackle this problem, we propose a multilayered deep convolutional neural network. The proposed model works in two blocks: Block-I convolutional neural network (B-I CNN), for detection and occurrence of disasters, and Block-II convolutional neural network (B-II CNN), for classification of natural disaster intensity types with different filters and parameters. The model is tested on 4428 natural images and performance is calculated and expressed as different statistical values: sensitivity (SE), 97.54%; specificity (SP), 98.22%; accuracy rate (AR), 99.92%; precision (PRE), 97.79%; and F1-score (F1), 97.97%. The overall accuracy for the whole model is 99.92%, which is competitive and comparable with state-of-the-art algorithms.

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On the Design of Efficient Hierarchic Architecture for Software Defined Vehicular Networks

Sensors ◽

10.3390/s21041400 ◽

2021 ◽

Vol 21 (4) ◽

pp. 1400

Author(s):

Muhammad Adnan ◽

Jawaid Iqbal ◽

Abdul Waheed ◽

Noor Ul Amin ◽

Mahdi Zareei ◽

...

Keyword(s):

Cloud Computing ◽

Quality Of Service ◽

Traffic Management ◽

Vehicular Networks ◽

Scheduling Algorithm ◽

Main Research ◽

First Come First Serve ◽

Computing Framework ◽

Simulation Results

Modern vehicles are equipped with various sensors, onboard units, and devices such as Application Unit (AU) that support routing and communication. In VANETs, traffic management and Quality of Service (QoS) are the main research dimensions to be considered while designing VANETs architectures. To cope with the issues of QoS faced by the VANETs, we design an efficient SDN-based architecture where we focus on the QoS of VANETs. In this paper, QoS is achieved by a priority-based scheduling algorithm in which we prioritize traffic flow messages in the safety queue and non-safety queue. In the safety queue, the messages are prioritized based on deadline and size using the New Deadline and Size of data method (NDS) with constrained location and deadline. In contrast, the non-safety queue is prioritized based on First Come First Serve (FCFS) method. For the simulation of our proposed scheduling algorithm, we use a well-known cloud computing framework CloudSim toolkit. The simulation results of safety messages show better performance than non-safety messages in terms of execution time.

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Improving Land Cover Classification Using Genetic Programming for Feature Construction

Remote Sensing ◽

10.3390/rs13091623 ◽

2021 ◽

Vol 13 (9) ◽

pp. 1623

Author(s):

João E. Batista ◽

Ana I. R. Cabral ◽

Maria J. P. Vasconcelos ◽

Leonardo Vanneschi ◽

Sara Silva

Keyword(s):

Land Cover ◽

Genetic Programming ◽

Satellite Images ◽

State Of The Art ◽

Binary Classification ◽

Feature Construction ◽

Classification Problems ◽

Construction Methods ◽

Box Models

Genetic programming (GP) is a powerful machine learning (ML) algorithm that can produce readable white-box models. Although successfully used for solving an array of problems in different scientific areas, GP is still not well known in the field of remote sensing. The M3GP algorithm, a variant of the standard GP algorithm, performs feature construction by evolving hyperfeatures from the original ones. In this work, we use the M3GP algorithm on several sets of satellite images over different countries to create hyperfeatures from satellite bands to improve the classification of land cover types. We add the evolved hyperfeatures to the reference datasets and observe a significant improvement of the performance of three state-of-the-art ML algorithms (decision trees, random forests, and XGBoost) on multiclass classifications and no significant effect on the binary classifications. We show that adding the M3GP hyperfeatures to the reference datasets brings better results than adding the well-known spectral indices NDVI, NDWI, and NBR. We also compare the performance of the M3GP hyperfeatures in the binary classification problems with those created by other feature construction methods such as FFX and EFS.

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Towards Circular Economy—A Comparative Analysis of the Countries of the European Union

Resources ◽

10.3390/resources10050049 ◽

2021 ◽

Vol 10 (5) ◽

pp. 49

Author(s):

Ewa Mazur-Wierzbicka

Keyword(s):

European Union ◽

Comparative Analysis ◽

Circular Economy ◽

Spatial Differentiation ◽

The European Union ◽

Main Research ◽

Eu Countries ◽

Population Member ◽

Research Population

There are many studies which implement and assess existing measurement manners and document the progress of entities towards the circular economy (CE) at various levels, or present or propose new possibilities of measurement. The majority of them refer to the micro level. The aim of this paper is to conduct a multidimensional comparative analysis of the implementation of circular economy by EU countries. After an in-depth critical analysis of the literature, CE indicators which were proposed by the European Commission were adopted as a basis. Owing to the research population-Member States of the European Union (EU-28), focusing on the said indicators was declared reasonable in all aspects. The classification of EU countries according to the level of their advancement in the concept of CE was adopted as a main research task. In order to do so, a relevant index of development of circular economy was created (IDCE). This will allow us, inter alia, to trace changes in the spatial differentiation of advancement of the EU countries in implementing CE over the years, to identify CE implementation leaders as well as countries particularly delayed in this regard. The comparative analysis was conducted by means of statistical methods. On the basis of the analyses, it was concluded that among all EU countries, those of the old EU are the most advanced in terms of CE. The analysis confirmed significant rising trends for IDCE only in the case of Belgium and The Netherlands.

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Tomato Leaf Disease Diagnosis Based on Improved Convolution Neural Network by Attention Module

Agriculture ◽

10.3390/agriculture11070651 ◽

2021 ◽

Vol 11 (7) ◽

pp. 651

Author(s):

Shengyi Zhao ◽

Yun Peng ◽

Jizhan Liu ◽

Shuo Wu

Keyword(s):

Neural Network ◽

High Performance ◽

Model Comparison ◽

Research Direction ◽

Disease Diagnosis ◽

Tomato Leaf ◽

Identification Accuracy ◽

Main Research ◽

Proposed Model ◽

Complex Features

Crop disease diagnosis is of great significance to crop yield and agricultural production. Deep learning methods have become the main research direction to solve the diagnosis of crop diseases. This paper proposed a deep convolutional neural network that integrates an attention mechanism, which can better adapt to the diagnosis of a variety of tomato leaf diseases. The network structure mainly includes residual blocks and attention extraction modules. The model can accurately extract complex features of various diseases. Extensive comparative experiment results show that the proposed model achieves the average identification accuracy of 96.81% on the tomato leaf diseases dataset. It proves that the model has significant advantages in terms of network complexity and real-time performance compared with other models. Moreover, through the model comparison experiment on the grape leaf diseases public dataset, the proposed model also achieves better results, and the average identification accuracy of 99.24%. It is certified that add the attention module can more accurately extract the complex features of a variety of diseases and has fewer parameters. The proposed model provides a high-performance solution for crop diagnosis under the real agricultural environment.

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UAV Image Multi-Labeling with Data-Efficient Transformers

Applied Sciences ◽

10.3390/app11093974 ◽

2021 ◽

Vol 11 (9) ◽

pp. 3974

Author(s):

Laila Bashmal ◽

Yakoub Bazi ◽

Mohamad Mahmoud Al Rahhal ◽

Haikel Alhichri ◽

Naif Al Ajlan

Keyword(s):

Data Augmentation ◽

Feature Representation ◽

Aerial Image ◽

Remote Sensing Images ◽

Training Set ◽

Proposed Model ◽

Class Labels ◽

Using Data ◽

Uav Image

In this paper, we present an approach for the multi-label classification of remote sensing images based on data-efficient transformers. During the training phase, we generated a second view for each image from the training set using data augmentation. Then, both the image and its augmented version were reshaped into a sequence of flattened patches and then fed to the transformer encoder. The latter extracts a compact feature representation from each image with the help of a self-attention mechanism, which can handle the global dependencies between different regions of the high-resolution aerial image. On the top of the encoder, we mounted two classifiers, a token and a distiller classifier. During training, we minimized a global loss consisting of two terms, each corresponding to one of the two classifiers. In the test phase, we considered the average of the two classifiers as the final class labels. Experiments on two datasets acquired over the cities of Trento and Civezzano with a ground resolution of two-centimeter demonstrated the effectiveness of the proposed model.

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