Genetic diversity of nuts traits and fatty acids of pecan (Carya illinoinensis) germplasm resources

Pecan (Carya illinoinensis) is the most economically valuable nut tree growing in many countries of the world. 10 nut quantitative traits and 15 fatty acid components of 112 pecan accessions were determined to analyze the morphometric and fatty acids genetic diversity in this study. The measured nuts traits of single nut mass, nut transverse, longitudinal and lateral diameter, nut aspect ratio, single nuts kernel mass, kernel yield and shell thinness were found highly variable. 15 fatty acids were detected among 36 tested fat acids in the nut kernel of pecan, and 14 fatty acids were found high variation except for the C12:0. Plenty of these traits are significant economic importance and could be used as breeding targets to improve the pecan variety. The positive correlations were observed between each pair of single nut mass, nut transverse diameter, nut longitudinal diameter and nut lateral diameter. Single nuts kernel mass is significantly positively correlated with single nut mass, nut transverse diameter, nut longitudinal diameter and nut lateral diameter. The 2D PCA plot successfully grouped the samples according to their phenotypic resemblance and morphological characteristics. 112 accessions were grouped into 4 and 3 major clusters according to the nut quantitative traits and fatty acids components and contents, respectively. Based on these results, we suggest that multidisciplinary research team should be set for genetic breeding of pecan to promote the conservation of local genetic diversity and improve the nuts production and commercialization in China.

Identification and Analysis of the AP2 Subfamily Transcription Factors in the Pecan (Carya illinoinensis)

The AP2 transcriptional factors (TFs) belong to the APETALA2/ ethylene-responsive factor (AP2/ERF) superfamily and regulate various biological processes of plant growth and development, as well as response to biotic and abiotic stresses. However, genome-wide research on the AP2 subfamily TFs in the pecan (Carya illinoinensis) is rarely reported. In this paper, we identify 30 AP2 subfamily genes from pecans through a genome-wide search, and they were unevenly distributed on the pecan chromosomes. Then, a phylogenetic tree, gene structure and conserved motifs were further analyzed. The 30 AP2 genes were divided into euAP2, euANT and basalANT three clades. Moreover, the cis-acting elements analysis showed many light responsive elements, plant hormone-responsive elements and abiotic stress responsive elements are found in CiAP2 promoters. Furthermore, a qPCR analysis showed that genes clustered together usually shared similar expression patterns in euAP2 and basalANT clades, while the expression pattern in the euANT clade varied greatly. In developing pecan fruits, CiAP2-5, CiANT1 and CiANT2 shared similar expression patterns, and their expression levels decreased with fruit development. CiANT5 displayed the highest expression levels in developing fruits. The subcellular localization and transcriptional activation activity assay demonstrated that CiANT5 is located in the nucleus and functions as a transcription factor with transcriptional activation activity. These results help to comprehensively understand the pecan AP2 subfamily TFs and lay the foundation for further functional research on pecan AP2 family genes.

Yield and vivipary of pecan nut (Carya illinoinensis[Wangenh.] K. Koch) in relation to soil moisture

Introduction: Viviparity in pecan nut (Carya illinoinensis [Wangenh.] K. Koch) has increased considerably. This genetic-environmental phenomenon can be controlled with soil moisture management and other quality variables.Objective: To determine the effect of soil moisture content on yield, nut size, kernel percentage and germinated nut on the tree.Materials and methods: Forty-year-old pecan nut trees were irrigated by 40 emitters with an output of 3.2 L∙h-1. From the phenological stage of shell hardening, irrigation time was 4, 6 and 8 h, corresponding to moisture levels of 0.257, 0.327 and 0.380 m3 of water per m3 of soil, at depths of 40 to 80 cm. Yield per tree, germinated nut percentage, fruit size and kernel percentage were evaluated during the production cycles of 2016 and 2017 production cycles.Results and discussion: During the two production cycles, when soil moisture level increased from 0.257 to 0.380 m3∙m-3, nut yield per tree, fruit length and diameter, and kernel percentage increased on average 23.8 %, 25.3 and 10 %, and 1.8 %, respectively; however, vivipary increased 11.2 %, which was reflected in the decrease of commercial pecan nut percentage. Treatments 0.327 and 0.380 m3∙m-3 had a similar effect (P > 0.05) on these variables.Conclusions: The lower moisture level (0.257 m3∙m-3), starting at the kernel filling stage, decreased vivipary and increased commercial kernel percentage.

Extending the Cultivation Area of Pecan (Carya illinoinensis) Toward the South in Southeastern Subtropical China May Cause Increased Cold Damage

Pecan (Carya illinoinensis) is an important nut tree species in its native areas in temperate and subtropical North America, and as an introduced crop in subtropical southeastern China as well. We used process-based modeling to assess the effects of climatic warming in southeastern China on the leaf-out phenology of pecan seedlings and the subsequent risk of “false springs,” i.e., damage caused by low temperatures occurring as a result of prematurely leafing out. In order to maximize the biological realism of the model used in scenario simulations, we developed the model on the basis of experiments explicitly designed for determining the responses modeled. The model showed reasonable internal accuracy when calibrated against leaf-out observations in a whole-tree chamber (WTC) experiment with nine different natural-like fluctuating temperature treatments. The model was used to project the timing of leaf-out in the period 2022–2099 under the warming scenarios RCP4.5 and RCP8.5 in southeastern China. Two locations in the main pecan cultivation area in the northern subtropical zone and one location south of the main cultivation area were addressed. Generally, an advancing trend of leaf-out was projected for all the three locations under both warming scenarios, but in the southern location, a delay was projected under RCP8.5 in many years during the first decades of the 21st century. In the two northern locations, cold damage caused by false springs was projected to occur once in 15–26 years at most, suggesting that pecan cultivation can be continued relatively safely in these two locations. Paradoxically, more frequent cold damage was projected for the southern location than for the two northern locations. The results for the southern location also differed from those for the northern locations in that more frequent cold damage was projected under the RCP4.5 warming scenario (once in 6 years) than under the RCP8.5 scenario (once in 11 years) in the southern location. Due to the uncertainties of the model applied, our conclusions need to be re-examined in an additional experimental study and further model development based on it; but on the basis of our present results, we do not recommend starting large-scale pecan cultivation in locations south of the present main pecan cultivation area in southeastern subtropical China.

Neopestalotiopsis rosae Causing Black Spot on Leaf and Fruit of Pecan (Carya illinoinensis) in China

Pecan (Carya illinoinensis K. Koch) is very productive and brings good economic returns for mountain dwellers. In recent years, symptoms were observed on both leaves and fruits of pecan in orchards, Fuyang, Anhui Province, and Jiande, Zhejiang Province. On the leaf, spots, rust-colored, long shuttle to irregular shaped, and 1–3 mm in size, firstly appeared between veins. The color of area around the spot gradually changed from green to yellow making a yellow halo. Then, some spots often merged in to a big lesion. On the fruit, symptoms firstly appear as irregular and black spots. The spots gradually spread to most part of the fruit and the core of the fruit turned black at the late stage of pathogenesis. Normally, the leaf infection rate was less than 10%, whereas infection rate of fruit could reach 5–15% which leads to drastic quality reduction and significant yield losses. To isolate the pathogens, fresh infected tissues were cut from samples, disinfected and cultured at 2% water agar at 28 oC till colony could be spotted. Fungal isolates were obtained by mycelia tip transferring. Similar cultural and morphological characters showed on 39 of the total 45 isolates. The mycelia grew rapidly in PDA plates, and colony diameter could reach 8.0 cm after culture at 25 oC in dark for 5 days. Mycelia on surface of the colony were cotton-like and showed obvious growth rings, and turn yellow from the middle on aged cultures. Pycnidia, brown to dark in color, began to form on PDA after 15 days’ culture in the dark. Conidia were fusoid, straight to slightly curved, 4-septate, 23.5–26.3×7.6–9.0μm, average 24.9×8.3μm (n=60) in size. The basal cell was hyaline, conic with a truncate base and thin-walled, average 4.4–5.1μm long (n=60). The three median cells were doliiform and brown with darker septa. The apical cell was hyaline, cylindrical, with 2–3 tubular apical appendages arising from the apical crest, unbranched, filiform, average 21.7–29.2 μm(n=60) long. The cultural and morphological characters of the strains matched the previous descriptions of Neopestalotiopsis sp. (Maharachchikumbura et al., 2014). Their 3 partial genes, ITS, β-tubulin (TUB) and translation elongation factor 1-alpha (TEF1-α), were amplified and sequenced with primers (Lee et al., 2006; Maharachchikumbura et al., 2014). These sequences were submitted in GenBank with accession number of MW504791 (ITS), MW633956 (TEF1-α), and MW633958 (TUB2), seperately. The BLAST results against the GenBank database showed more than 99% identity with sequences claimed from Neopestalotiopsis sp. The multilocus phylogenetic analysis of the three genes showed the isolate was closest with N. rosae. The strains were finally identified as N. rosae by morphological and molecular analysis. Pathogenicity testing was performed by spreading 20μl conidia suspension drop (1 × 106 conidia ml-1) on surface of wounded or unwounded leaves and fruits. The pecan variety MaHan was used for inoculation. Wounds were made by scratching with sterile needles, and then a drop of 20μl conidia suspension was spread on the wounded area. For unwounded inoculation, a drop of 20μl conidia suspension was spread without wound procedure. The same amount of water drops were spread on the surface of wounded and unwounded tissues as controls. The plant parts were wrapped with PE films to keep moisture after drop spreading. Ten trees were selected for inoculation, and 10 leaves and fruits were randomly selected separately for wounded and unwounded inoculation and corresponding controls in each tree. The similar symptoms appeared from 3 dpi on leaves and 9 dpi on fruits, and finally showed on more than 90% wounded inoculated leaves or fruits and on less than 50% after unwounded inoculation, while controls remained symptomless. N. rosae was consistently re-isolated from inoculated parts with symptoms, while not from the control. Therefore, N. rosae was confirmed as the pathogen causing black spot on leaf and fruit of pecan (C. illinoinensis). To the best of our knowledge, this is the first report of N. rosae causing black spot disease of pecan (C. illinoinensis). In recent years, both the infection area and severity of this disease grow rapidly, which means the potential of the disease to become a big problem in local orchards.

Infecção cruzada de Colletotrichum nymphaeae e reação de cultivares de nogueira-pecã

Juglans regia e Carya illinoinensis, ambas da família Juglandaceae, são espécies de nogueiras conhecidas mundialmente pela produção das chamadas nozes, com crescente expansão da área cultivada na América do Sul. Entretanto, nos últimos anos houve aumento da incidência de doenças nessas espécies, o que compromete a rentabilidade dos cultivos e a qualidade do produto. Colletotrichum nymphaeae foi recentemente identificado no Brasil causando danos em frutos de Juglans regia. Este estudo teve como objetivo avaliar o potencial de infecção cruzada de C. nymphaeae, isolado de frutos sintomáticos de Juglans regia, em folíolos e frutos de cultivares de Carya illinoinensis. Para isso, discos de meio de cultura contendo estruturas do patógeno foram depositados sobre folíolos e frutos de seis e três cultivares de Carya illinoinensis, respectivamente. Colletotrichum nymphaeae mostrou-se patogênico tanto em folíolos como em frutos de todas as cultivares avaliadas, sendo que as maiores lesões em folíolos foram observadas nas cultivares ‘Barton’, ‘Melhorada’ e ‘Imperial’, enquanto que a cultivar ‘Shawnee’ demonstrou menor suscetibilidade ao patógeno. Nos frutos, a cultivar ‘Imperial’ mostrou-se mais suscetível ao patógeno, já que apresentou as maiores lesões.