The Impact of Sampling Type, Frequency and Scale of Collection System on SARS-CoV-2 Quantification Fidelity

With the rapid onset of the COVID-19 pandemic, wastewater-based epidemiology (WBE) sampling methodologies for SARS-CoV-2 were often implemented quickly and may not have taken the unique drainage catchment characteristics into account. One question of debate is the relevance of grab versus composite samples when surveying for SARS-CoV-2 at various catchment scales. This study assessed the impact of grab versus composite sampling on the detection and quantification of SARS-CoV-2 in catchment basins with flow rates ranging from high-flow (wastewater treatment plant influent), to medium-flow (neighborhood-scale micro-sewershed), to low-flow (city block-scale micro-sewershed) and down to ultra-low flow (building scale). At the high-flow site, grab samples were reasonably comparable to 24-h composite samples with the same non-detect rate (0%) and SARS-CoV-2 concentrations that differed by 32% on the Log10 scale. However, as the flow rates decreased, the percentage of false-negative grab samples increased up to 44% and the SARS-CoV-2 concentrations of grab samples varied by up to 1-2 orders of magnitude compared to their respective composite sample concentrations. At the ultra-low-flow site, increased sampling frequencies down to every 5 min led to composite samples with higher fidelity to the SARS-CoV-2 load. Thus, composite sampling is superior to grab sampling, especially as flow decreases.

ANALISIS FISIKA KIMIA AIR DANAU PANIAI-PAPUA UNTUK PENGEMBANGAN BUDIDAYA IKAN

Penelitian ini bertujuan menganalisis kelayakan perairan berdasarkan parameter fisika dan kimia perairan danau Paniai untuk kegiatan budidaya ikan. Penelitian ini merupakan penelitian deskriptif kuantitatif dengan mengkaji kondisi kualitas air perairan danau Paniai, Papua. Pengambilan dan pengukuran sampel air pada setiap lokasi sampling dilakukan dengan metode composite sampling (gabungan tempat). Contoh air danau diambil pada permukaan dan pertengahan. Pengukuran dan pengumpulan data dilakukan sebanyak 2 kali dengan interval waktu antar pengukuran selama 1 bulan. Hasil penelitian didapatkan parameter fisika masih memenuhi syarat baku mutu, parameter kimia, dari delapan parameter yang diukur terdapat 3 parameter yang tidak memenuhi baku mutu yaitu, H2S, Nitrat dan Posfat. Hal ini menunjjukan bahwa tingginya buangan limbah dari sektor pertanian dan rumah tangga yang masuk ke dalam danau dan berpontesi terjadinya eutrofikasi dan peledakan pertumbuhan tanaman air. This study aims to analyze the feasibility of the waters based on the physical, chemical and biological parameters of the waters of Paniai lake for fish farming activities. This research is a quantitative descriptive study by examining the condition of the water quality of the waters of Lake Paniai, Papua. Water samples were taken and measured at each sampling location using the composite sampling method (combined places). Lake water samples were taken at the surface and in the middle. Measurement and data collection were carried out 2 times with an interval of 1 month between measurements. The results showed that the physical parameters still show the quality standard requirements, chemical parameters, from the eight parameters measured there were 3 parameters that did not show the quality standards, namely, H2S, Nitrate and Phosphate. This shows that the high discharge of waste from the agricultural and household sectors that enters the lake has the potential for eutrophication and explosive growth of aquatic plants.

Study of Heavy Metal Concentration in underground water at Janjghir Champa region in Chhattisgarh

The present study focused on the groundwater contamination in pre monsoon and post monsoon status in ten villages near Janjghir Champa district Chhattisgarh state India. Groundwater samples were collected from sites in pre monsoon (April May 2020) and post monsoon (Sept October 2020) using composite sampling method. Ten heavy metals were detected in groundwater samples. The observed results revealed the exceeding value of heavy metals prescribed by WHO for groundwater.

Application and Analysis of a Composite Sampling Strategy to Cost-Effectively Compare Nutritive Characteristics of Perennial Ryegrass Cultivars in Field Trials

Pasture nutritive value is economically important in south-eastern Australian dairy production systems, yet measurement of nutritive characteristics in pasture cultivar evaluation trials is not routinely undertaken, primarily due to cost. An approach aiming to reduce the total laboratory analysis costs in multi-harvest field trials by testing some entries as composite samples is provided. A field trial evaluating 31 trial entries sown in 4 replicates was used. On nine harvest occasions, samples were collected from each plot, dried, ground and analysed using near infrared spectroscopy for key nutritive characteristics (metabolisable energy (ME), crude protein (CP) and neutral detergent fibre (NDF)). Additionally, composite samples of 17 of the 31 entries from each harvest were created by combining sub-samples of material from each of four replicate plots into a single sample that was also analysed. A linear mixed model (LMM) analysis accounting for spatial and temporal variation as well as spatial and temporal correlations was conducted, comparing the full data model where all plots at all harvests were tested individually to a data model where some entries were evaluated as individual plots and others as composites. The precision and accuracy of the estimates for the two models were similar and best linear unbiased prediction (BLUP) means of the composite sampling strategy model were comparable to the full data model. It was concluded that if composite sampling is used in conjunction with testing samples from individual plots on a selection of cultivars, statistically valid inferences are possible and the total cost of determining the nutritive characteristics of perennial ryegrass cultivars in field trials can be reduced.

Wastewater SARS-CoV-2 Concentration and Loading Variability from Grab and 24-Hour Composite Samples

The ongoing COVID-19 pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) requires a significant, coordinated public health response. Assessing case density and spread of infection is critical and relies largely on clinical testing data. However, clinical testing suffers from known limitations, including test availability and a bias towards enumerating only symptomatic individuals. Wastewater-based epidemiology (WBE) has gained widespread support as a potential complement to clinical testing for assessing COVID-19 infections at the community scale. The efficacy of WBE hinges on the ability to accurately characterize SARS-CoV-2 concentrations in wastewater. To date, a variety of sampling schemes have been used without consensus around the appropriateness of grab or composite sampling. Here we address a key WBE knowledge gap by examining the variability of SARS-CoV-2 concentrations in wastewater grab samples collected every 2 hours for 72 hours compared with corresponding 24-hour flow-weighted composite samples. Results show relatively low variability (mean for all assays = 741 copies 100 mL-1, standard deviation = 508 copies 100 mL-1) for grab sample concentrations, and good agreement between most grab samples and their respective composite (mean deviation from composite = 159 copies 100 mL-1). When SARS-CoV-2 concentrations are used to calculate viral load, the discrepancy between grabs (log10 difference = 12.0) or a grab and its associated composite (log10 difference = 11.8) are amplified. A similar effect is seen when estimating carrier prevalence in a catchment population with median estimates based on grabs ranging 62-1853 carriers. Findings suggest that grab samples may be sufficient to characterize SARS-CoV-2 concentrations, but additional calculations using these data may be sensitive to grab sample variability and warrant the use of flow-weighted composite sampling. These data inform future WBE work by helping determine the most appropriate sampling scheme and facilitate sharing of datasets between studies via consistent methodology.

Occurrence of Micropollutants in Wastewater and Evaluation of Their Removal Efficiency in Treatment Trains: The Influence of the Adopted Sampling Mode

The monitoring of micropollutants in water compartments, in particular pharmaceuticals and personal care products, has become an issue of increasing concern over the last decade. Their occurrence in surface and groundwater, raw wastewater and treated effluents, along with the removal efficiency achieved by different technologies, have been the subjects of many studies published recently. The concentrations of these contaminants may vary widely over a given time period (day, week, month, or year). In this context, this paper investigates the average concentration and removal efficiency obtained by adopting four different sampling modes: grab sampling, 24-h time proportional, flow proportional and volume proportional composite sampling. This analysis is carried out by considering three ideal micropollutants presenting different concentration curves versus time (day). It compares the percentage deviations between the ideal concentration (and removal efficiencies) and the differently measured concentrations (removal efficiencies) and provides hints as to the best sampling mode to adopt when planning a monitoring campaign depending on the substances under study. It concludes that the flow proportional composite sampling mode is, in general, the approach which leads to the most reliable measurement of concentrations and removal efficiencies even though, in specific cases, the other modes can also be correctly adopted.

An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA

Use of environmental DNA (eDNA) to assess distributions of aquatic and semi-aquatic macroorganisms is promising, but sampling schemes may need to be tailored to specific objectives. Given the potentially high variance in aquatic eDNA among replicate grab samples, compositing smaller water volumes collected over a period of time may be more effective for some applications. In this study, we compared eDNA profiles from composite water samples aggregated over three hours with grab water samples. Both sampling patterns were performed with identical autosamplers paired at two different sites in a headwater stream environment, augmented with exogenous fish eDNA from an upstream rearing facility. Samples were filtered through 0.8 μm cellulose nitrate filters and DNA was extracted with a cetyl trimethylammonium bromide procedure. Eukaryotic and bacterial community profiles were derived by amplicon sequencing of 12S ribosomal, 16S ribosomal, and cytochrome oxidase I loci. Operational taxa were assigned to genus with a lowest common ancestor approach for eukaryotes and to family with the RDP Classifier software for prokaryotes. Eukaryotic community profiles were more consistent with composite sampling than grab sampling. Downstream, rarefaction curves suggested faster taxon accumulation for composite samples, and estimated richness was higher for composite samples as a set than for grab samples. Upstream, composite sampling produced lower estimated richness than grab samples, but with overlapping standard errors. Furthermore, a bimodal pattern of richness as a function of sequence counts suggested the impact of clumped particles on upstream samples. Bacterial profiles were insensitive to sample method, consistent with the more even dispersion expected for bacteria compared with eukaryotic eDNA. Overall, samples composited over 3 h performed equal to or better than triplicate grab sampling for quantitative community metrics, despite the higher total sequencing effort provided to grab replicates. On the other hand, taxon-specific detection rates did not differ appreciably and the two methods gave similar estimates of the ratio of the common fish genera Salmo and Coregonus at each site. Unexpectedly, Salmo eDNA dropped out substantially faster than Coregonus eDNA between the two sites regardless of sampling method, suggesting that differential settling affects the estimation of relative abundance. We identified bacterial patterns that were associated with eukaryotic diversity, suggesting potential roles as biomarkers of sample representativeness.