Assessment of perennial ryegrass (Lolium perenne L.) genotypes under Latvia agro-ecological conditions

Within the frame of the Nordic/Baltic public-private partnership ’PPP for pre-breeding in perennial ryegrass’ various activities were performed, including assessment of L. perenne (Lp) genotypes under agro-ecological conditions of Latvia. This article summarizes the data obtained in two harvest years for 19 intermediate tetraploid (4x) Lp genotypes. In order to compare the results obtained in ryegrass with performance of grass interspecies hybrids (Fl), which become especially relevant in the recent years, two varieties, developed in Latvia – Lolium × boucheanum Kunth. ‘Saikava’ and × Festulolium ‘Vizule’ were included in the experiment. Various scores were performed, including evaluation of regrowth, intensity of culm development, sward cover, crown rust (Puccinia coronata) susceptibility, etc. The dry matter yield (DMY) and fodder quality were also determined. It can be concluded that the genotypes showed relatively good results in the first two harvest years. Wintering conditions were favourable. Despite the intensified drought and heat in the 1st ley year, relatively high DMY, which ranged from 9.30 to 12.15 t ha-1, for Lp were harvested in three cuts. In the 2nd ley year, under more favourable humidity conditions, Lp in four cuts provided similar DMY, which ranged from 8.81 to 11.50 t ha-1. If we compare the average DMY of Lp and Fl genotypes, it can be concluded that in the first two harvest years no significant differences were found, the average DMY was 10.30 and 10.64 t ha-1, respectively. No significant differences were found between Lp and Fl in terms of forage quality.

Pteridophyte distribution of the Urals and adjacent areas: a dataset

Data on the species diversity and distribution of pteridophytes (lycophytes and ferns) in the Urals and adjacent areas are presented. The dataset includes 13,742 observations of two classes Lycopodiopsida and Polypodiopsida. In total, the dataset contains information on 16 families, 28 generas, 65 species, four subspecies and nine interspecies hybrids. All records are for lycophytes and ferns collected over 170 years between 1853 and 2021. The dataset presented is based on herbarium specimens, published data and field research conducted by the authors. This dataset is the first and important step towards generalising information on the current diversity and geographical distribution of pteridophytes in the Urals and adjacent areas. The dataset contains 13,742 records of 65 species of pteridophytes occurrences in the Urals and adjacent territories: Udmurt Republic (42,100 km2); Perm Krai (160,600 km2); Sverdlovsk Oblast (194,800 km2); Chelyabinsk Oblast (87,900 km2); Republic of Bashkortostan (143,600 km2); Tyumen Oblast (160,100 km2); Yamalo-Nenets Autonomous Okrug (769,300 km2); Khanty-Mansi Autonomous Okrug (534,800km2) and Kurgan Oblast (71,500 km2). Each record includes a geographical description of the place of discovery and habitat, year of discovery, author of the finding and determination, as well as a link to a literary source (if the data were published) or the place of storage of the herbarium specimen. The presented dataset supplements the information on the occurrence of pteridophytes in the Russian Federation as a whole and clarifies their distribution in the Urals.

Restoring fertility in yeast hybrids: Breeding and quantitative genetics of beneficial traits

Hybrids between species can harbor a combination of beneficial traits from each parent and may exhibit hybrid vigor, more readily adapting to new harsher environments. Interspecies hybrids are also sterile and therefore an evolutionary dead end unless fertility is restored, usually via auto-polyploidisation events. In the Saccharomyces genus, hybrids are readily found in nature and in industrial settings, where they have adapted to severe fermentative conditions. Due to their hybrid sterility, the development of new commercial yeast strains has so far been primarily conducted via selection methods rather than via further breeding. In this study, we overcame infertility by creating tetraploid intermediates of Saccharomyces interspecies hybrids to allow continuous multigenerational breeding. We incorporated nuclear and mitochondrial genetic diversity within each parental species, allowing for quantitative genetic analysis of traits exhibited by the hybrids and for nuclear–mitochondrial interactions to be assessed. Using pooled F12 generation segregants of different hybrids with extreme phenotype distributions, we identified quantitative trait loci (QTLs) for tolerance to high and low temperatures, high sugar concentration, high ethanol concentration, and acetic acid levels. We identified QTLs that are species specific, that are shared between species, as well as hybrid specific, in which the variants do not exhibit phenotypic differences in the original parental species. Moreover, we could distinguish between mitochondria-type–dependent and –independent traits. This study tackles the complexity of the genetic interactions and traits in hybrid species, bringing hybrids into the realm of full genetic analysis of diploid species, and paves the road for the biotechnological exploitation of yeast biodiversity.

The Integrity of the HMR complex is necessary for centromeric binding and reproductive isolation in Drosophila

Postzygotic isolation by genomic conflict is a major cause for the formation of species. Despite its importance, the molecular mechanisms that result in the lethality of interspecies hybrids are still largely unclear. The genus Drosophila, which contains over 1600 different species, is one of the best characterized model systems to study these questions. We showed in the past that the expression levels of the two hybrid incompatibility factors Hmr and Lhr diverged in the two closely related Drosophila species, D. melanogaster and D. simulans, resulting in an increased level of both proteins in interspecies hybrids. The overexpression of the two proteins also leads to mitotic defects, a misregulation in the expression of transposable elements and decreased fertility in pure species. In this work, we describe a distinct six subunit protein complex containing HMR and LHR and analyse the effect of Hmr mutations on complex integrity and function. Our experiments suggest that HMR needs to bring together components of centromeric and pericentromeric chromatin to fulfil its physiological function and to cause hybrid male lethality.

Diversity of MHC IIB genes and parasitism in hybrids of evolutionarily divergent cyprinoid species indicate heterosis advantage

The genes of the major histocompatibility complex (MHC) are an essential component of the vertebrate immune system and MHC genotypes may determine individual susceptibility to parasite infection. In the wild, selection that favors MHC variability can create situations in which interspecies hybrids experience a survival advantage. In a wild system of two naturally hybridizing leuciscid fish, we assessed MHC IIB genetic variability and its potential relationships to hosts’ ectoparasite communities. High proportions of MHC alleles and parasites were species-specific. Strong positive selection at specific MHC codons was detected in both species and hybrids. MHC allele expression in hybrids was slightly biased towards the maternal species. Controlling for a strong seasonal effect on parasite communities, we found no clear associations between host-specific parasites and MHC alleles or MHC supertypes. Hybrids shared more MHC alleles with the more MHC-diverse parental species, but expressed intermediate numbers of MHC alleles and positively selected sites. Hybrids carried significantly fewer ectoparasites than either parent species, suggesting a hybrid advantage via potential heterosis.

New records of adventive vascular plants in the Ulan-Ude city and its neighborhood (Western Transbaikalia)

New data on 10 adventive plant species are given. Two species and one subspecies (Atriplex hortensis, Solanum nigrum subsp. schultesii, Nepeta cataria) are new for the Republic of Buryatia. Five species and two interspecies hybrids (Arctium × mixtum, Galinsoga parviflora, Hesperis pycnotricha, Lactuca serriola, Medicago × varia, Onobrychis viciifolia, Viola tricolor) are recorded for the first time in the Ulan-Ude city and its neighborhood.

The Development of the Genic SSR Markers for Analysis of Genetic Diversity in Gooseberry Cultivars

Gooseberry is one of the most promising and underrated small fruit crops. There is a need to improve and genotype the existing cultivars, and this work requires the use of new efficient DNA marking techniques. Marker-assisted selection (MAS) is a modern approach for work with genetic resources. However, the genetic determinants of key qualitative traits are poorly studied. Therefore, we developed SSR markers located in flavonoid biosynthesis genes that can affect the resistance of plants to biotic and abiotic stresses to study the genetic diversity of gooseberry cultivars grown in the Russian Federation and varying in genetic and geographical origin. We have genotyped 22 gooseberry cultivars using a set of 19 of our original microsatellite markers and two neutral previously published ones. A total of 53 alleles were found. Nine of the 21 analyzed loci were polymorphic. The most polymorphic loci of flavonoid biosynthesis were found in the DFR gene (RucDFR1-2, RucDFR1-3, RucDFR2-1), their mean PIC (polymorphism information content) being 0.65, comparable to the PIC values of neutral markers. Our set of gene-targeted SSR markers showed that most of all the studied gooseberry cultivars differed in origin, based on which they were divided into three groups: European cultivars, Russian cultivars, and interspecies hybrids. Thus, the polymorphic markers can be used for cultivar identification and certification as well as for the marker-assisted selection of gooseberry plants having different origins and phenotypic traits.

Lineage-specific selection and the evolution of virulence in the Candida clade

Candida albicans is the most common cause of systemic fungal infections in humans and is considerably more virulent than its closest known relative, Candida dubliniensis. To investigate this difference, we constructed interspecies hybrids and quantified mRNA levels produced from each genome in the hybrid. This approach systematically identified expression differences in orthologous genes arising from cis-regulatory sequence changes that accumulated since the two species last shared a common ancestor, some 10 million y ago. We documented many orthologous gene-expression differences between the two species, and we pursued one striking observation: All 15 genes coding for the enzymes of glycolysis showed higher expression from the C. albicans genome than the C. dubliniensis genome in the interspecies hybrid. This pattern requires evolutionary changes to have occurred at each gene; the fact that they all act in the same direction strongly indicates lineage-specific natural selection as the underlying cause. To test whether these expression differences contribute to virulence, we created a C. dubliniensis strain in which all 15 glycolysis genes were produced at modestly elevated levels and found that this strain had significantly increased virulence in the standard mouse model of systemic infection. These results indicate that small expression differences across a deeply conserved set of metabolism enzymes can play a significant role in the evolution of virulence in fungal pathogens.

The interactions between habitat, sex, biomass and leaf traits of different willow (Salix) genotypes

Knowledge of the impacts of sex on plant mortality and biomass production has scientific and practical importance. In the case of willows, we know relatively little about such effects. The main objective of this study was to evaluate whether the sex of individuals of different willow species determines their biomass and mortality. An additional goal was to determine whether the secondary sex characteristics, such as leaf traits, depend on sex. The experiment was conducted from 2011 to 2014 with 8100 plants comprising 150 willow genotypes, including 8 species, 16 interspecies hybrids, cultivars, and specimens differentiated by sex. Statistical analysis of the leaf traits revealed their relationship to sex. On average, male specimens have longer and wider leaves. They also have longer petioles. Males of the studied Salix genotypes were characterized by higher biomass and showed a greater survival rate than females but only under better site conditions; when the site conditions were poorer, males had higher mortality than females.

The Integrity of the Speciation Core Complex is necessary for centromeric binding and reproductive isolation in Drosophila

ABSTRACTPostzygotic isolation by genomic conflict is a major cause for the formation of species. Despite its importance, the molecular mechanisms that result in the lethality of interspecies hybrids are still largely unclear. The genus Drosophila, which contains over 1600 different species, is one of the best characterized model systems to study these questions. We showed in the past that the expression levels of the two hybrid incompatibility factors Hmr and Lhr diverged in the two closely related Drosophila species, D. melanogaster and D. simulans, resulting in an increased level of both proteins in interspecies hybrids. This overexpression leads to mitotic defects, a misregulation in the expression of transposable elements and a decreased fertility. In this work, we describe a distinct six subunit Speciation Core Complex (SCC) containing HMR and LHR and analyse the effect of Hmr mutations on complex function and integrity. Our experiments suggest that HMR acts as a bridging factor between centromeric chromatin and pericentromeric heterochromatin, which is required for both its physiological function and its ability to cause hybrid male lethality.