Flax rust from Linum marginale: pathogenicity reactions on the Linum usitatissimum set of differential varieties

1989 ◽  
Vol 67 (11) ◽  
pp. 3187-3191 ◽  
Author(s):  
G. J. Lawrence
Keyword(s):  
Resistance Gene ◽  
Resistance Genes ◽  
Linum Usitatissimum ◽  
Virulence Genes ◽  
Avirulence Genes ◽  
Reaction Type ◽  
Melampsora Lini ◽  
Two Factors ◽  
Standard Set ◽  
Differential Varieties

Flax rust, Melampsora lini (Ehrenb.) Lév., occurs on Linum marginale Cunn., the only Linum species indigenous to Australia. Evidence suggests that the rust is native to L. marginale and is not a recent introduction. Forty-five isolates from this rust population, collected from 21 locations, were tested for reaction type on the standard set of 28 flax (L. usitatissimum) differential lines. All isolates were avirulent on the majority of differentials and only three clearly different virulence phenotypes were distinguished. This finding contrasts with the results of a companion study in which the same isolates displayed many different virulence phenotypes when tested on a set of L. marginale lines. Two factors apparently contribute to the failure of the L. usitatissimum differentials to detect most of the variation for virulence present in this rust population. First, 10 of the differentials have been reported to possess resistance gene L9 in addition to their designated gene. Since all isolates recognize the L9 gene, these differentials could make no contribution to differentiating between the isolates. Second, many of the L. usitatissimum resistance genes apparently do not occur in L. marginale and with no selection on the rust to conserve or evolve the corresponding virulence genes, the corresponding avirulence genes appear to have become, or remained, fixed in the rust population.

Pathogenic variability of Erysiphe graminis f.sp. hordei in South Australia, 1981-1985

1993 ◽  
Vol 44 (8) ◽  
pp. 1931 ◽  
Author(s):  
MA Hossain ◽  
MS Rahman
Keyword(s):  
Resistance Gene ◽  
Resistance Genes ◽  
Virulence Genes ◽  
South Australia ◽  
Virulence Gene ◽  
Gene Frequencies ◽  
Individual Gene ◽  
Detached Leaf ◽  
Pathogenic Variability ◽  
Pathogen Populations

Two techniques (mobile seedling nursery and detached leaf) were used to study the pathogenic variability of Erysiphe gramznis DC. ex Merat f.sp. hordei Em. Marchal in four barley growing areas of South Australia (S.A.). The mobile nurseries were conducted over 5 years (1981-1985) to monitor changes in the spectrum of virulence and individual gene frequencies. The race-specific resistance genes M1-a6, M1-k, M1-v and M1-ra were found to be susceptible to the pathogen populations in all surveyed areas. The same virulence genes spectrum (V-a6, V-k, V-v and V-ra) was present in the pathogen populations in the surveyed areas throughout the period of 1981-1984. During the 1985 season, one new virulence matching the resistance gene in cv. Forrest was detected. The resistance in cv. Galleon did not 'break down' over the cultivation period when its cultivation rose to 55% of the barley areas of S.A. The probable reasons for apparent durability of Galleon resistance are discussed. The relative frequencies of the matching virulence genes varied only slightly over time and space. The relative frequency of V-k was always almost 100%. The relative frequencies of V-a6, V-ra and V-v occurred at a higher rate than expected, since the matching resistance genes were not deployed in barley cultivars. The results of the detached leaf experiments (1982-1984) confirmed the virulence spectrum of the pathogen populations found in the mobile nursery experiments. Three individual single colony isolates from different cultivars (Clipper, Sonja and Goldmarker) were isolated and purified. Each isolate can produce a susceptible infection on other cultivars having different resistance genes in addition to its matching cultivar. Thus, each isolate carries more than one virulence gene. In the mobile nursery tests, the resistance gene M1-v (Varunda and LaMi) showed variable infection types (I.T.l-3), but in most cases it was moderately susceptible (I.T.3). Under the controlled conditions of the detached leaf tests, it gave an I.T.3 indicating the presence of virulence gene for M1-v in the pathogen populations. Reasons for this variable reaction are discussed. Midas with an ineffective gene (M1-a6) produced a resistant reaction to all isolates, suggesting the presence of additional resistance genes in the cultivar. The Mildew resistance genes M1-a, M1-a7, M1-a9, 141-al2, M1-g, M1-h, M1-(CP) and ml-o3 were found to be resistant in all surveyed areas in both experiments throughout S.A. Either the matching virulence genes for these resistance genes were absent or they were present at a very low frequency in the pathogen populations that could not be detected by the sampling techniques used.

scholarly journals Whole Genome Sequencing of Staphylococci Isolated From Bovine Milk Samples

2021 ◽  
Vol 12 ◽  
Author(s):  
Marte Ekeland Fergestad ◽  
Fabrice Touzain ◽  
Sarne De Vliegher ◽  
Anneleen De Visscher ◽  
Damien Thiry ◽  
...  
Keyword(s):  
Antimicrobial Resistance ◽  
Resistance Gene ◽  
Resistance Genes ◽  
Virulence Genes ◽  
Bovine Milk ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Bacterial Survival ◽  
Intramammary Infections ◽  
Antimicrobial Resistance Genes

Staphylococci are among the commonly isolated bacteria from intramammary infections in bovines, where Staphylococcus aureus is the most studied species. This species carries a variety of virulence genes, contributing to bacterial survival and spread. Less is known about non-aureus staphylococci (NAS) and their range of virulence genes and mechanisms, but they are the most frequently isolated bacteria from bovine milk. Staphylococci can also carry a range of antimicrobial resistance genes, complicating treatment of the infections they cause. We used Illumina sequencing to whole genome sequence 93 staphylococcal isolates selected from a collection of staphylococcal isolates; 45 S. aureus isolates and 48 NAS isolates from 16 different species, determining their content of antimicrobial resistance genes and virulence genes. Antimicrobial resistance genes were frequently observed in the NAS species as a group compared to S. aureus. However, the lincosamide resistance gene lnuA and penicillin resistance gene blaZ were frequently identified in NAS, as well as a small number of S. aureus. The erm genes conferring macrolide resistance were also identified in several NAS isolates and in a small number of S. aureus isolates. In most S. aureus isolates, no antimicrobial resistance genes were detected, but in five S. aureus isolates three to six resistance genes were identified and all five of these carried the mecA gene. Virulence genes were more frequently identified in S. aureus, which contained on average five times more virulence genes compared to NAS. Among the NAS species there were also differences in content of virulence genes, such as S. chromogenes with a higher average number of virulence genes. By determining the content of a large selection of virulence genes and antimicrobial resistance genes in S. aureus and 16 different NAS species our results contribute with knowledge regarding the genetic basis for virulence and antimicrobial resistance in bovine staphylococci, especially the less studied NAS. The results can create a broader basis for further research into the virulence mechanisms of this important group of bacteria in bovine intramammary infections.

scholarly journals In silico Assessment of the Genotypic Distribution of Virulence and Antibiotic Resistance Genes in Vibrio cholerae

2017 ◽  
Vol 16 (1) ◽  
pp. 77-85 ◽  
Author(s):  
Nusrat Nahar ◽  
Ridwan Bin Rashid
Keyword(s):  
Antibiotic Resistance ◽  
Vibrio Cholerae ◽  
Resistance Gene ◽  
Resistance Genes ◽  
In Silico ◽  
Virulence Genes ◽  
Antibiotic Resistance Gene ◽  
Antibiotic Resistance Genes ◽  
Antibiotic Resistant ◽  
Genotype 2

Vibrio cholerae has long been reported as an important cause of death in developing countries. The study detected the virulence and antibiotic resistance gene of eight V. cholerae isolates through in silico tools. Cholera toxins, ctxA and ctxB were found in six isolates (75%). Seventy-five percent isolates were also found to be positive for zonula occludens toxin, zot which is known to increase the permeability by altering the tight junction of the small intestine. Accessory cholera enterotoxin ace, responsible for fluid accumulation, was detected in four V. cholerae strains. Seven isolates (87.5%) were positive for toxin-coregulated pilus, tcp which helps the bacteria to adhere to gut mucosa. Both ompW and toxR genes were found in 87.5% of the isolates. Twenty-five percent isolates harboured strA, strB, sulII, dfrA1, floR genes and SXT element demonstrating that they were multidrug-resistant (MDG) bacterium. One isolate was found to be positive for tetA gene while no erythromycin resistance gene, ermA and ermB was found. Virulence genes were found in all genotypes indicating that their distribution was not genotypeoriented while genotype 2 harboured no antibiotic resistance genes. This data helps to predict virulence genes associated with cholera and also demonstrates the presence of antibiotic resistance genes. Bacteria acquired the antibiotic resistance gene through natural process which cannot be stopped. So by analyzing the resistance pattern we can choose appropriate antibiotics. In silico study helps us to predict the antibiotic resistant genotypes and can easily identify antibiotic resistant strains which help us to treat cholera infections and reduce the morbidity and mortality rate of the infected individuals.Dhaka Univ. J. Pharm. Sci. 16(1): 77-85, 2017 (June)

scholarly journals Standing genetic variation of the AvrPm17 avirulence gene in powdery mildew limits the effectiveness of an introgressed rye resistance gene in wheat

2021 ◽  
Author(s):  
Marion C. Mueller ◽  
Lukas Kunz ◽  
Seraina Schudel ◽  
Sandrine Kammerecker ◽  
Jonatan Isaksson ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Powdery Mildew ◽  
Qtl Mapping ◽  
Resistance Gene ◽  
Resistance Genes ◽  
Resistance Breeding ◽  
Avirulence Gene ◽  
Avirulence Genes ◽  
Immune Receptor ◽  
Wheat Powdery Mildew

AbstractIntrogressions of chromosomal segments from related species into wheat are important sources of resistance against fungal diseases. The durability and effectiveness of introgressed resistance genes upon agricultural deployment is highly variable - a phenomenon that remains poorly understood as the corresponding fungal avirulence genes are largely unknown. Until its breakdown, the Pm17 resistance gene introgressed from rye to wheat provided broad resistance against powdery mildew (Blumeria graminis). Here, we used QTL mapping to identify the corresponding wheat mildew avirulence effector AvrPm17. It is encoded by two paralogous genes that exhibit signatures of re-occurring gene conversion events and are members of a mildew sub-lineage specific effector cluster. Extensive haplovariant mining in wheat mildew and related sub-lineages identified several ancient virulent AvrPm17 variants that were present as standing genetic variation in wheat powdery mildew prior to the Pm17 introgression, thereby paving the way for the rapid breakdown of the Pm17 resistance. QTL mapping in mildew identified a second genetic component likely corresponding to an additional resistance gene present on the 1AL.1RS translocation carrying Pm17. This gene remained previously undetected due to suppressed recombination within the introgressed rye chromosomal segment. We conclude that the initial effectiveness of 1AL.1RS was based on simultaneous introgression of two genetically linked resistance genes. Our results demonstrate the relevance of pathogen-based genetic approaches to disentangle complex resistance loci in wheat. We propose that identification and monitoring of avirulence gene diversity in pathogen populations becomes an integral part of introgression breeding to ensure effective and durable resistance in wheat.Significance StatementDomesticated and wild wheat relatives provide an important source of new immune receptors for wheat resistance breeding against fungal pathogens. The durability of these resistance genes is variable and difficult to predict, yet it is crucial for effective resistance breeding. We identified a fungal effector protein recognised by an immune receptor introgressed from rye to wheat. We found that variants of the effector allowing the fungus to overcome the resistance are ancient. They were already present in the wheat powdery mildew gene pool before the introgression of the immune receptor and are therefore responsible for the rapid resistance breakdown. Our study demonstrates that the effort to identify new resistance genes should be accompanied by studies of avirulence genes on the pathogen side.

Host–pathogen specificity in postseedling reaction of Linum usitatissimum to Melampsora lini

1992 ◽  
Vol 70 (6) ◽  
pp. 1168-1174 ◽  
Author(s):  
J. A. Hoes ◽  
E. O. Kenaschuk
Keyword(s):  
Linum Usitatissimum ◽  
Genetic Background ◽  
Virulence Genes ◽  
Single Gene ◽  
Adult Plant ◽  
Host Genotype ◽  
Resistance Level ◽  
Melampsora Lini ◽  
Host Pathogen ◽  
Different Levels

Eleven commercial flax cultivars and 10 race differentials, inoculated at the prebloom stage, showed significantly different levels of postseedling resistance to virulent races of flax rust. The effects of hosts and of races were significant or highly significant. Races differentiated hosts, hosts differentiated races, and host × race interaction was highly significant. Non-allelic, single-gene differences in host genotype were associated with higher levels of resistance and were ascribed to epistatic action by an L6-complex and by genes K1, M4, and N1. Epistatic action for susceptibility by gene L9 may have occurred in the race differentials Dakota (L9M) and Koto (L9P). The high aggressiveness of race 22 on 10 commercial race-differentiating hosts was correlated with possession of 26 virulence genes compared with 12–15 genes possessed by three other races. Indications are that allelism of host resistance genes and linked virulence of corresponding virulence genes, and also genetic background, were factors in host × pathogen interactions. The cultivar McGregor is a superior source of postseedling rust resistance because each of its genes K1 and L6 was associated with a high resistance level to race 22. Key words: adult plant, allelism, epistasis, flax.

The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance genes

1999 ◽  
Vol 20 (3) ◽  
pp. 265-277 ◽  
Author(s):  
Walter Gassmann ◽  
Matthew E. Hinsch ◽  
Brian J. Staskawicz
Keyword(s):  
Disease Resistance ◽  
Resistance Gene ◽  
Resistance Genes ◽  
Bacterial Resistance ◽  
Disease Resistance Genes

scholarly journals Metagenomics Analysis Reveals the Microbial Communities, Antimicrobial Resistance Gene Diversity and Potential Pathogen Transmission Risk of Two Different Landfills in China

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 230
Author(s):  
Shan Wan ◽  
Min Xia ◽  
Jie Tao ◽  
Yanjun Pang ◽  
Fugen Yu ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Microbial Communities ◽  
Resistance Gene ◽  
Resistance Genes ◽  
Gene Diversity ◽  
Antibiotic Resistance Gene ◽  
Antibiotic Resistance Genes ◽  
Pathogen Transmission ◽  
Transmission Risk ◽  
Antimicrobial Resistance Gene

In this study, we used a metagenomic approach to analyze microbial communities, antibiotic resistance gene diversity, and human pathogenic bacterium composition in two typical landfills in China. Results showed that the phyla Proteobacteria, Bacteroidetes, and Actinobacteria were predominant in the two landfills, and archaea and fungi were also detected. The genera Methanoculleus, Lysobacter, and Pseudomonas were predominantly present in all samples. sul2, sul1, tetX, and adeF were the four most abundant antibiotic resistance genes. Sixty-nine bacterial pathogens were identified from the two landfills, with Klebsiella pneumoniae, Bordetella pertussis, Pseudomonas aeruginosa, and Bacillus cereus as the major pathogenic microorganisms, indicating the existence of potential environmental risk in landfills. In addition, KEGG pathway analysis indicated the presence of antibiotic resistance genes typically associated with human antibiotic resistance bacterial strains. These results provide insights into the risk of pathogens in landfills, which is important for controlling the potential secondary transmission of pathogens and reducing workers’ health risk during landfill excavation.

scholarly journals Serotype distribution, antimicrobial susceptibility, antimicrobial resistance genes and virulence genes of Salmonella isolated from a pig slaughterhouse in Yangzhou, China

AMB Express ◽  
2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Quan Li ◽  
Jian Yin ◽  
Zheng Li ◽  
Zewei Li ◽  
Yuanzhao Du ◽  
...  
Keyword(s):  
Public Health ◽  
Antimicrobial Resistance ◽  
Resistance Genes ◽  
Antimicrobial Susceptibility ◽  
Virulence Genes ◽  
Multidrug Resistant ◽  
Resistance Rate ◽  
Economic Losses ◽  
Production Chain ◽  
Antimicrobial Resistance Genes

AbstractSalmonella is an important food-borne pathogen associated with public health and high economic losses. To investigate the prevalence and the characteristics of Salmonella in a pig slaughterhouse in Yangzhou, a total of 80 Salmonella isolates were isolated from 459 (17.43%) samples in 2016–2017. S. Derby (35/80, 43.75%) was the most prevalent, followed by S. Rissen (16/80, 20.00%) and S. Newlands (11/80, 13.75%). The highest rates of susceptibility were observed to cefoxitin (80/80, 100.0%) and amikacin (80/80, 100.0%), followed by aztreonam (79/80, 98.75%) and nitrofurantoin (79/80, 98.75%). The highest resistance rate was detected for tetracycline (65/80, 81.25%), followed by ampicillin (60/80, 75.00%), bactrim (55/80, 68.75%), and sulfisoxazole (54/80, 67.50%). Overall, 91.25% (73/80) of the isolates were resistant to at least one antibiotic, while 71.25% (57/80) of the isolate strains were multidrug resistant in the antimicrobial susceptibility tested. In addition, 86.36% (19/22) of the 22 antimicrobial resistance genes in the isolates were identified. Our data indicated that the resistance to certain antimicrobials was significantly associated, in part, with antimicrobial resistance genes. Furthermore, 81.25% (65/80) isolates harbored the virulence gene of mogA, of which 2 Salmonella Typhimurium isolates carried the mogA, spvB and spvC virulence genes at the same time. The results showed that swine products in the slaughterhouse were contaminated with multidrug resistant Salmonella commonly, especially some isolates carry the spv virulence genes. The virulence genes might facilitate the dissemination of the resistance genes to consumers along the production chain, suggesting the importance of controlling Salmonella during slaughter for public health.

Organization, Expression and Evolution of a Disease Resistance Gene Cluster in Soybean

Genetics ◽  
2002 ◽  
Vol 162 (4) ◽  
pp. 1961-1977
Author(s):  
Michelle A Graham ◽  
Laura Fredrick Marek ◽  
Randy C Shoemaker
Keyword(s):  
Disease Resistance ◽  
Resistance Gene ◽  
Resistance Genes ◽  
Developmental Stages ◽  
Gene Evolution ◽  
Pcr Amplification ◽  
Disease Resistance Genes ◽  
Disease Resistance Gene ◽  
R Genes ◽  
Specific Primers

Abstract PCR amplification was previously used to identify a cluster of resistance gene analogues (RGAs) on soybean linkage group J. Resistance to powdery mildew (Rmd-c), Phytophthora stem and root rot (Rps2), and an ineffective nodulation gene (Rj2) map within this cluster. BAC fingerprinting and RGA-specific primers were used to develop a contig of BAC clones spanning this region in cultivar “Williams 82” [rps2, Rmd (adult onset), rj2]. Two cDNAs with homology to the TIR/NBD/LRR family of R-genes have also been mapped to opposite ends of a BAC in the contig Gm_Isb001_091F11 (BAC 91F11). Sequence analyses of BAC 91F11 identified 16 different resistance-like gene (RLG) sequences with homology to the TIR/NBD/LRR family of disease resistance genes. Four of these RLGs represent two potentially novel classes of disease resistance genes: TIR/NBD domains fused inframe to a putative defense-related protein (NtPRp27-like) and TIR domains fused inframe to soybean calmodulin Ca2+-binding domains. RT-PCR analyses using gene-specific primers allowed us to monitor the expression of individual genes in different tissues and developmental stages. Three genes appeared to be constitutively expressed, while three were differentially expressed. Analyses of the R-genes within this BAC suggest that R-gene evolution in soybean is a complex and dynamic process.

scholarly journals Molecular characteristics and virulence gene profiles of Staphylococcus aureus isolates in Hainan, China

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Xuehan Li ◽  
Tao Huang ◽  
Kai Xu ◽  
Chenglin Li ◽  
Yirong Li
Keyword(s):  
Staphylococcus Aureus ◽  
Antibiotic Resistance ◽  
Resistance Genes ◽  
Virulence Genes ◽  
Mainland China ◽  
Geographical Location ◽  
Antibiotic Resistance Genes ◽  
Virulence Gene ◽  
Molecular Characteristics ◽  
Staphylococcal Protein A

Abstract Background There have been no reports regarding the molecular characteristics, virulence features, and antibiotic resistance profiles of Staphylococcus aureus (S. aureus) from Hainan, the southernmost province of China. Methods Two hundred twenty-seven S. aureus isolates, consisting of 76 methicillin-resistant S. aureus (MRSA) and 151 methicillin-susceptible S. aureus (MSSA), were collected in 2013–2014 and 2018–2019 in Hainan, and investigated for their molecular characteristics, virulence genes, antibiotic resistance profiles and main antibiotic resistance genes. Results Forty sequence types (STs) including three new STs (ST5489, ST5492 and ST5493), and 79 Staphylococcal protein A (spa) types were identified based on multilocus sequence typing (MLST) and spa typing, respectively. ST398 (14.1%, 32/227) was found to be the most prevalent, and the prevalence of ST398-MSSA increased significantly from 2013 to 2014 (5.5%, 5/91) to 2018–2019 (18.4%, 25/136). Seventy-six MRSA isolates were subject to staphylococcus chromosomal cassette mec (SCCmec) typing. SCCmec-IVa was the predominant SCCmec type, and specifically, ST45-SCCmec IVa, an infrequent type in mainland China, was predominant in S. aureus from Hainan. The antibiotic resistance profiles and antibiotic resistance genes of S. aureus show distinctive features in Hainan. The resistant rates of the MRSA isolates to a variety of antibiotics were significantly higher than those of the MSSA isolates. The predominant erythromycin and tetracycline resistance genes were ermC (90.1%, 100/111) and tetK (91.8%, 78/85), respectively. Eleven virulence genes, including the Panton-Valentine leukocidin (pvl) and eta, were determined, and the frequency of eta and pvl were found to be 57.3 and 47.6%. Such high prevalence has never been seen in mainland China before. Conclusion S. aureus isolates in Hainan have unique molecular characteristics, virulence gene and antibiotic resistance profiles, and main antibiotic resistance genes which may be associated with the special geographical location of Hainan and local trends in antibiotic use.

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