scholarly journals Selection of upland rice lines in advanced yield trials and response to abiotic stress

2021 ◽  
Vol 22 (10) ◽  
Author(s):  
Arif Tirtana ◽  
Bambang Sapta Purwoko ◽  
ISWARI SARASWATI DEWI ◽  
Trikoesoemaningtyas Trikoesoemaningtyas
Keyword(s):  
Abiotic Stress ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Aluminum Toxicity ◽  
Upland Rice ◽  
Yield Potential ◽  
Research Station ◽  
High Productivity ◽  
Yield Trials ◽  
Selection Of

Abstract. Tirtana A, Purwoko BP, Dewi IS, Trikoesoemaningtyas. 2021. Selection of upland rice lines in advanced yield trials and response to abiotic stress. Biodiversitas 22: 4694-4703. Breeding programs to obtain superior upland rice varieties with high productivity and adaptive in dryland must be prioritized to maximize the potential of dryland. This research aimed to obtain information on the agronomic performance of upland rice lines in advanced yield trials and select the best lines with high productivity and tolerance to drought stress and aluminum toxicity. Advanced yield trials were conducted from November 2016 until March 2017 in Bogor and Sukabumi using a randomized complete block design, where three replications were nested in the environments. Aluminum and drought stress evaluations were conducted at Muara Research Station, Bogor, in May-June 2018 and September-October 2018. Based on the selection index, twelve lines were selected with superior agronomic characters and high yield potential. These lines had characteristics as follows: days to harvesting (110.2-116.0 days), number of filled grains (70.6-101.3 grains), number of unfilled grains (27.9-58.4 grains), and productivity (2.2-2.9 tons ha-1). Evaluation of drought tolerance showed four lines with better drought tolerance than the drought-sensitive check IR20. The aluminum tolerance evaluation obtained two tolerant lines and nine lines with moderate responses to aluminum toxicity. The selected lines need to be further evaluated in multilocation trials.

scholarly journals Genetic Diversity of Selected Rice Genotypes under Water Stress Conditions

Plants ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 27
Author(s):  
Mahmoud M. Gaballah ◽  
Azza M. Metwally ◽  
Milan Skalicky ◽  
Mohamed M. Hassan ◽  
Marian Brestic ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Water Stress ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Ssr Markers ◽  
Similarity Index ◽  
Stress Conditions ◽  
Yield Potential ◽  
Drought Tolerant ◽  
Rice Genotypes

Drought is the most challenging abiotic stress for rice production in the world. Thus, developing new rice genotype tolerance to water scarcity is one of the best strategies to achieve and maximize high yield potential with water savings. The study aims to characterize 16 rice genotypes for grain and agronomic parameters under normal and drought stress conditions, and genetic differentiation, by determining specific DNA markers related to drought tolerance using Simple Sequence Repeats (SSR) markers and grouping cultivars, establishing their genetic relationship for different traits. The experiment was conducted under irrigated (normal) and water stress conditions. Mean squares due to genotype × environment interactions were highly significant for major traits. For the number of panicles/plants, the genotypes Giza179, IET1444, Hybrid1, and Hybrid2 showed the maximum mean values. The required sterility percentage values were produced by genotypes IET1444, Giza178, Hybrid2, and Giza179, while, Sakha101, Giza179, Hybrid1, and Hybrid2 achieved the highest values of grain yield/plant. The genotypes Giza178, Giza179, Hybrid1, and Hybrid2, produced maximum values for water use efficiency. The effective number of alleles per locus ranged from 1.20 alleles to 3.0 alleles with an average of 1.28 alleles, and the He values for all SSR markers used varied from 0.94 to 1.00 with an average of 0.98. The polymorphic information content (PIC) values for the SSR were varied from 0.83 to 0.99, with an average of 0.95 along with a highly significant correlation between PIC values and the number of amplified alleles detected per locus. The highest similarity coefficient between Giza181 and Giza182 (Indica type) was observed and are susceptible to drought stress. High similarity percentage between the genotypes (japonica type; Sakha104 with Sakha102 and Sakha106 (0.45), Sakha101 with Sakha102 and Sakha106 (0.40), Sakha105 with Hybrid1 (0.40), Hybrid1 with Giza178 (0.40) and GZ1368-S-5-4 with Giza181 (0.40)) was also observed, which are also susceptible to drought stress. All genotypes are grouped into two major clusters in the dendrogram at 66% similarity based on Jaccard’s similarity index. The first cluster (A) was divided into two minor groups A1 and A2, in which A1 had two groups A1-1 and A1-2, containing drought-tolerant genotypes like IET1444, GZ1386-S-5-4 and Hybrid1. On the other hand, the A1-2 cluster divided into A1-2-1 containing Hybrid2 genotype and A1-2-2 containing Giza179 and Giza178 at coefficient 0.91, showing moderate tolerance to drought stress. The genotypes GZ1368-S-5-4, IET1444, Giza 178, and Giza179, could be included as appropriate materials for developing a drought-tolerant variety breeding program. Genetic diversity to grow new rice cultivars that combine drought tolerance with high grain yields is essential to maintaining food security.

Selection for Some Functional Markers for Adaptability of Helianthus argophyllus × Helianthus annuus Derived Population under Abiotic Stress Conditions

Helia ◽  
2018 ◽  
Vol 41 (68) ◽  
pp. 83-108 ◽  
Author(s):  
Muhammad Mubashar Hussain ◽  
Maria Kausar ◽  
Saeed Rauf ◽  
M. Farukh Zafar Khan ◽  
Jakub Paderweski ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Drought Stress ◽  
Cell Membrane ◽  
Crop Production ◽  
Functional Markers ◽  
High Fertility ◽  
Epicuticular Waxes ◽  
Membrane Injury ◽  
Leaf Hairiness ◽  
Selection Of

AbstractAbiotic stresses including drought are major crop production constraints. However, specific functional phenotypic markers induce resistance against these stresses. Therefore, a study was initiated to study the variability, inheritance and selection of epicuticular waxes (EW) and leaf hairiness (LH) along with low cell membrane injuries (CMI) within F2 populations derived by crossing H. annuus×H. argophyllus lines. These traits have been shown to be associated with drought tolerance of Helianthus argophyllus and thus study aims to introgress these traits in Helinathus annuus. The studied parent populations showed contrasting values of the traits. The drought susceptible line CMS-14 and CMS-20 showed lower epicuticular waxes (0.79, 0.69 mg g−1), leaf hairiness (0.75, 1.53) and higher cell membrane injury (40.90, 55.76 %) respectively while drought resistant line Argo 1802 and 1806 showed higher epicuticular waxes (2.28, 3.18), leaf hairiness (3.71, 3.80) and lower cell membrane injury (14.22, 21.54 %) respectively. The F1 hybrids had mean values of the three studied parameters i. e. epicuticular waxes (1.50 mg g−1), cell membrance injury (32.54 %) and leaf hairiness (2.74) in the range of parent lines, but some of F2 individuals extend beyond this range (Parents and F1s). The two-step selections maintained high variability especially of LH for set of F2 individuals (H. annuus CMS-20×H. argophyllus 1806). Simultaneous selection of F2 individuals with high values of LH or EW with low CMI was possible. The selected plants were further studied for narrow leaf, high fertility and silver canopy color. Selected material was promoted as the candidate of inbred line. Plant (F4) having introgressed traits (silver canopy) showed lower yield (19 %) than green leafed plants (53 %) and commercial hybrids under drought stress (63 % and 53 %). The study could help to increase the abiotic stress tolerance, minimize the yield losses under drought stress and increase functional diversity within sunflower.

scholarly journals BrEXLB1, a Brassica rapa Expansin-Like B1 Gene Is Associated with Root Development, Drought Stress Response, and Seed Germination

Genes ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 404 ◽  
Author(s):  
Muthusamy Muthusamy ◽  
Joo Yeol Kim ◽  
Eun Kyung Yoon ◽  
Jin A. Kim ◽  
Soo In Lee
Keyword(s):  
Abiotic Stress ◽  
Drought Stress ◽  
Stress Response ◽  
Seed Germination ◽  
Drought Tolerance ◽  
Root Growth ◽  
Brassica Rapa ◽  
Root Development ◽  
Clubroot Disease ◽  
Qrt Pcr

Expansins are structural proteins prevalent in cell walls, participate in cell growth and stress responses by interacting with internal and external signals perceived by the genetic networks of plants. Herein, we investigated the Brassica rapa expansin-like B1 (BrEXLB1) interaction with phytohormones (IAA, ABA, Ethephon, CK, GA3, SA, and JA), genes (Bra001852, Bra001958, and Bra003006), biotic (Turnip mosaic Virus (TuMV), Pectobacterium carotovorum, clubroot disease), and abiotic stress (salt, oxidative, osmotic, and drought) conditions by either cDNA microarray or qRT-PCR assays. In addition, we also unraveled the potential role of BrEXLB1 in root growth, drought stress response, and seed germination in transgenic Arabidopsis and B. rapa lines. The qRT-PCR results displayed that BrEXLB1 expression was differentially influenced by hormones, and biotic and abiotic stress conditions; upregulated by IAA, ABA, SA, ethylene, drought, salt, osmotic, and oxidative conditions; and downregulated by clubroot disease, P. carotovorum, and TuMV infections. Among the tissues, prominent expression was observed in roots indicating the possible role in root growth. The root phenotyping followed by confocal imaging of root tips in Arabidopsis lines showed that BrEXLB1 overexpression increases the size of the root elongation zone and induce primary root growth. Conversely, it reduced the seed germination rate. Further analyses with transgenic B. rapa lines overexpressing BrEXLB1 sense (OX) and antisense transcripts (OX-AS) confirmed that BrEXLB1 overexpression is positively associated with drought tolerance and photosynthesis during vegetative growth phases of B. rapa plants. Moreover, the altered expression of BrEXLB1 in transgenic lines differentially influenced the expression of predicted BrEXLB1 interacting genes like Bra001852 and Bra003006. Collectively, this study revealed that BrEXLB1 is associated with root development, drought tolerance, photosynthesis, and seed germination.

scholarly journals Microbial Diversity of Upland Rice Roots and Their Influence on Rice Growth and Drought Tolerance

2020 ◽  
Vol 8 (9) ◽  
pp. 1329
Author(s):  
Zhiqiang Pang ◽  
Ying Zhao ◽  
Peng Xu ◽  
Diqiu Yu
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Plant Growth ◽  
Upland Rice ◽  
Oryza Sativa L ◽  
Soluble Sugar ◽  
Stress Conditions ◽  
Rice Roots ◽  
Microbial Resources

Among abiotic stresses, drought is one of the most important factors limiting plant growth. To increase their drought tolerance and survival, most plants interact directly with a variety of microbes. Upland rice (Oryza sativa L.) is a rice ecotype that differs from irrigated ecotype rice; it is adapted to both drought-stress and aerobic conditions. However, its root microbial resources have not been explored. We isolated bacteria and fungi from roots of upland rice in Xishuangbanna, China. Four hundred sixty-two endophytic and rhizospheric isolates (337 bacteria and 125 fungi) were distributed. They were distributed among 43 genera on the basis of 16S rRNA and internal transcribed spacer (ITS) gene sequence analysis. Notably, these root microbes differed from irrigated rice root microbes in irrigated environments; for example, members of the Firmicutes phylum were enriched (by 28.54%) in the roots of the upland plants. The plant growth-promoting (PGP) potential of 217 isolates was investigated in vitro. The PGP ability of 17 endophytic and 10 rhizospheric isolates from upland rice roots was evaluated under well-irrigated and drought-stress conditions, and 9 fungal strains increased rice seedling shoot length, shoot and root fresh weight (FW), antioxidant capability, and proline (Pro) and soluble sugar contents. Our work suggests that fungi from upland rice roots can increase plant growth under irrigated and drought-stress conditions and can serve as effective microbial resources for sustainable agricultural production in arid regions.

Evaluation of green gram genotypes for drought tolerance by PEG (polyethylene glycol) induced drought stress at seedling stage

2019 ◽  
Author(s):  
M. Jincya ◽  
V. Babu Rajendra Prasad ◽  
P. Jeyakumara ◽  
A. Senthila ◽  
N. Manivannan
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Moisture Stress ◽  
Germination Percentage ◽  
Seedling Stage ◽  
Green Gram ◽  
Stress Index ◽  
Seedling Mortality ◽  
Seed Vigour ◽  
Selection Of

Drought stress is one of the major constraints for pulse production which negatively affecting its growth and production. Screening and selection of desirable genotypes for drought tolerance is the first and foremost important step in pulse breeding program. In green gram standardization for moisture stress was done under laboratory conditions using various concentration of PEG 6000 and 50% seedling mortality was observed at 0.5 MPa of moisture stress. Using this level of moisture stress 108 green gram genotypes were screened for their drought tolerance at seedling level and the following parameters viz., germination percentage, promptness index, radicle length, root length stress index, germination stress index and seed vigour were recorded. Observations revealed that the following green gram genotypes COGG 1332, VGG 16069, VGG 17003, VGG 17004, VGG 17009, VGG 17019 and VGG 17045 were found highly tolerant to moisture stress at seedling stage.

scholarly journals Molecular Cloning, Expression and Insilco Analysis of Drought Stress Inducible MYB Transcription Factor Encoding Gene From C4 Plant Eleusine Coracana

2021 ◽  
Author(s):  
MEGHA BHATT
Keyword(s):  
Gene Expression ◽  
Abiotic Stress ◽  
Drought Stress ◽  
Molecular Cloning ◽  
Stress Responses ◽  
Promoter Region ◽  
Regulatory Elements ◽  
Full Length ◽  
Growth And Yield ◽  
Yield Potential

Abstract Drought is one of the key abiotic stresses that critically influences the crops by restraining their growth and yield potential. Being sessile, plant tackle the detrimental effects of drought stress via modulating the cellular state by changing the gene expression. Such alteration of gene expression is essentially driven by the transcriptional syndicate. Transcription factors (TF) are the key regulatory protein that controls the expression of their target gene by binding to the cis-regulatory elements present in the promoter region. Myb-TF subiquitously present in all eukaryotes belong to one of the largest TF family, and play wide array of biological functions in plants including anthocyanin biosynthesis, vasculature system, cell signaling, seed maturation and abiotc stress responses. In the present study, isolation, and molecular cloning of full length Myb TF from Eleusine corocana has been performed. The isolated full-length coding sequence has 1053 bp and 350 aa was submitted to NCBI (Accession number MT312253). The transcript level of EcMYB increases under different abiotic stress treatment including dehydration, salinity, and high temperature stress. The promoter region of EcMyb1 was found to be enriched in stress-responsive cis-regulatory elements such as DRE, HSE, ABRE etc. In phylogenetic analysis, EcMyb1 appeared to have high homology with its monocot orthologs particularly Sateria italica, Hordeum vulgare, Saccharum barberi and Oryza sativa. The three-dimension protein structure was generated based on homology modeling and structural aspects were discussed. Further, Insilco analysis was conducted to explore the physiological properties, subcellular localization, potential post-translational modification sites (phosphorylation and glycosylation sites), and molecular and biological function of full-length protein. Overall, the expression profiling and Insilco analysis of EcMyb1 strongly indicated its potential role in abiotic stress response in Eleusine corocana.

scholarly journals Assessment of Groundnut Elite Lines under Drought Conditions and Selection of Tolerance Associated Traits

2019 ◽  
Vol 2019 ◽  
pp. 1-10
Author(s):  
Achirou Bacharou Falke ◽  
Falalou Hamidou ◽  
Oumarou Halilou ◽  
Abdou Harou
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Root Length ◽  
Root Length Density ◽  
Block Design ◽  
Genotypic Variation ◽  
Water Regimes ◽  
Year Effect ◽  
Fodder Production ◽  
Selection Of

Investigation of groundnut genotypes response to drought stress could contribute to improving drought tolerance and productivity. The objective of this study was to investigate new improved groundnut varieties response to drought stress under controlled conditions to identify tolerant materials and drought tolerance related traits. Thus, three experiments were conducted during off-seasons: two experiments in lysimetric system in 2017 and 2018 and one experiment in pots in 2017, to assess twelve varieties in a randomized complete block design with 2 water regimes and 4 replications. The water regimes were a full irrigation (WW) and an intermittent drought imposed at flowering times (WS). The investigated morphophysiological traits like transpiration, specific leaf area, root dry matter, root length density, and yield components decreased under WS. Significant year effect and genotypic variation were observed on most of investigated traits. Genotypes ICGV 92206 and ICGV 06319 showed low transpiration and revealed high pod yielding and early maturing genotypes under both water regimes, while genotypes ICGV 92035, ICGV 92195, ICGV 02038, ICGV 07211, and ICGV 07210 were drought-sensitive for pods production but produced high haulm under both water regimes. ICGV 92206, ICGV 02005, ICGV 02125, and ICGV 06319 showed higher yielding than 55-437 and Fleur 11. In this study, low total transpiration to control water loss, chlorophyll content, and root length density revealed drought tolerance associated traits for pod production, while TTW, TE, RDW, and RV revealed drought tolerance associated traits for fodder production.

scholarly journals Combining Ability for Drought Tolerance in Upland Rice Varieties at Reproductive Stage

2017 ◽  
Vol 9 (3) ◽  
pp. 138 ◽  
Author(s):  
G. M. Malemba ◽  
F. M. Nzuve ◽  
J. M. Kimani ◽  
M. F. Olubayo ◽  
J. W. Muthomi
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Combining Ability ◽  
Upland Rice ◽  
Block Design ◽  
Field Evaluation ◽  
Rice Production ◽  
Rice Varieties ◽  
F2 Population ◽  
Drought Conditions

Rice is an important food crop for human population ranking second among the mostly consumed cereal grains worldwide. Upland rice production is greatly constrained by drought stress resulting from rainfall variation patterns. Cultivation of drought tolerant varieties is considered the best option for drought management in rice production. The already released upland rice varieties are drought susceptible and have poor grain attributes hence, the aim of this study was to determine the combining ability for drought tolerance in upland rice. Four upland NERICA and two upland rice varieties were selected as parents for generating F1s crosses following 6 × 6 complete diallel. The generated 30 F1 crosses were advanced to F2 population for field evaluation. The F2 progenies together with six parents were planted in two sites; KALRO-Mwea Center Farm and Kirogo research Farm following a randomized complete block design in three replications. Drought stress was initiated 45 days after sowing after which data was collected on drought and agronomic parameters. The study revealed large genetic variations among the genotypes used. Both GCA and SCA were significant indicating the importance of both additive and non additive gene action in the expression of studied traits. In this study NERICA 2 and NERICA 15 were identified as good combiners for drought tolerance and grain yield under drought conditions. The single crosses namely; NERICA 15 × NERICA 2, NERICA 1 × NERICA 15, NERICA 11 × NERICA 15 and NERICA 2 × NERICA 15 were identified as superior for improving yield under drought conditions.

Evaluation of the tolerance of Thai indigenous upland rice germplasm to early drought stress using multiple selection criteria

2015 ◽  
Vol 15 (2) ◽  
pp. 109-118 ◽  
Author(s):  
Kittichai Narenoot ◽  
Tidarat Monkham ◽  
Sompong Chankaew ◽  
Patcharin Songsri ◽  
Wattana Pattanagul ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Selection Criteria ◽  
Upland Rice ◽  
Block Design ◽  
Rice Variety ◽  
Tolerance Index ◽  
Rice Varieties ◽  
Rice Germplasm ◽  
Drought Tolerance Index

Drought remains the most important factor that affects rice productivity, especially in rainfed areas, worldwide. Upland rice is one of the crop choices of farmers in the rainfed environment. Although upland rice varieties require less water than lowland rice varieties, yields often remain limited by drought, particularly in the period of early growth. The aims of this study were to identify the traits related to early drought tolerance in upland rice varieties, and to identify the potential sources of germplasm for early drought tolerance. A total of sixty upland rice varieties were planted in a factorial experiment with a randomized complete block design with 3 replications in the rainy seasons of 2011 and 2012, under greenhouse conditions. Based on the drought tolerance index (DTI), the test germplasm sources were classified into three groups: (i) susceptible; (ii) moderately tolerant; (iii) tolerant to drought stress. Grain yield (GY) showed significant negative correlations with the leaf rolling score (r= − 0.623, P< 0.01), the leaf death score (LDS) (r= − 0.673, P< 0.01) and the recovery score (r= − 0.746, P< 0.01), while leaf dry matter (r= 0.698, P< 0.01) and leaf water potential (r= 0.618, P< 0.01) had significant positive correlations with GY. These findings indicate the suitability of the DTI as the selection criteria for early drought tolerance in a breeding programme. In addition, the upland rice germplasm accessions KKU-ULR011, KKU-ULR012, KKU-ULR125, KKU-ULR199 and KKU-ULR292 were identified as having high levels of stability for drought tolerance in both the 2011 and 2012 experiments, suggesting their potential for further use for rice variety improvement for drought tolerance.

scholarly journals Screening of Key Drought Tolerance Indices for Cotton at the Flowering and Boll Setting Stage Using the Dimension Reduction Method

2021 ◽  
Vol 12 ◽  
Author(s):  
FengLei Sun ◽  
Qin Chen ◽  
QuanJia Chen ◽  
Menghui Jiang ◽  
Wenwei Gao ◽  
...  
Keyword(s):  
Regression Analysis ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Principal Component ◽  
Yield Potential ◽  
Cotton Production ◽  
Branch Number ◽  
Total Variability ◽  
Drought Tolerance Indices ◽  
Tolerance Indices

Drought is one of the main abiotic stresses that seriously influences cotton production. Many indicators can be used to evaluate cotton drought tolerance, but the key indicators remain to be determined. The objective of this study was to identify effective cotton drought tolerance indicators from 19 indices, including morphology, photosynthesis, physiology, and yield-related indices, and to evaluate the yield potential of 104 cotton varieties under both normal and drought-stress field conditions. Combined with principal component analysis (PCA) and a regression analysis method, the results showed that the top five PCs among the 19, with eigenvalues &gt; 1, contributed 65.52, 63.59, and 65.90% of the total variability during 2016 to 2018, respectively, which included plant height (PH), effective fruit branch number (EFBN), single boll weight (SBW), transpiration rate (Tr) and chlorophyll (Chl). Therefore, the indicator dimension decreased from 19 to 5. A comparison of the 19 indicators with the 5 identified indicators through PCA and a combined regression analysis found that the results of the final cluster of drought tolerance on 104 cotton varieties were basically consistent. The results indicated that these five traits could be used in combination to screen cotton varieties or lines for drought tolerance in cotton breeding programs, and Zhong R2016 and Xin lu zao 45 exhibited high drought tolerance and can be selected as superior parents for good yield performance under drought stress.

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