Justification for setting the individual animal genotype call rate threshold at eighty-five percent1

2016 ◽  
Vol 94 (11) ◽  
pp. 4558-4569 ◽  
Author(s):  
D. C. Purfield ◽  
M. McClure ◽  
D. P. Berry
PEDIATRICS ◽  
1958 ◽  
Vol 21 (6) ◽  
pp. 949-949

"The safeguards contained in the scientific method are repugnant to some who devote themselves to psychotherapy, and their argument against it always harks back to the uniqueness of the individual." The author points out that this is an obscurantist argument and it does not follow that because an individual is a unique reality, he cannot be compared with anyone else. On this basis there would be no science of zoology as every individual animal is also a unique reality, but this has not been an obstacle to comparison and collective study in this science. The argument is reminiscent of claims prevalent during the controversies about evolution when the opponents asserted that man was an improper subject for comparitive study because of his fundamental distinction from all other creatures. Only insofar as the common denominators between individuals can be ascertained may the subject matter of psychiatry become the object of scientific and rational inquiry and without this it could not be taught. We would be in the position of having to accept the pronouncements of supposedly singularly gifted individuals on faith, and continuity in the field would presumably depend entirely upon apprenticeship.


2009 ◽  
Vol 75 (6) ◽  
pp. 1769-1773 ◽  
Author(s):  
Sergio Sánchez ◽  
Remigio Martínez ◽  
Alfredo García ◽  
Jorge Blanco ◽  
Jesús E. Blanco ◽  
...  

ABSTRACT To provide information on the persistence and maintenance of colonization with Shiga toxin-producing Escherichia coli (STEC) in sheep, pulsed-field gel electrophoresis analysis of STEC isolates (n = 145) belonging to serogroups O5, O91, and O146 from 39 healthy animals was performed in a 12-month longitudinal study carried out with four sheep flocks. At the flock level as well as the individual-animal level, the same clones were obtained on sampling occasions separated by as much as 11 months.


1973 ◽  
Vol 80 (2) ◽  
pp. 259-267 ◽  
Author(s):  
G. F. Wilson ◽  
N. N. Adeeb ◽  
R. C. Campling

SummaryA series of digestibility trials was conducted with non-lactating cows and adult castrated male sheep given diets of hay and dried or high-moisture maize grain in various physical forms. Sheep were able to digest all forms of maize well and to a greater extent than cows. In cows considerable variation in digestibility of maize was associated with the particle size of the maize and the individual animal. Maximum digestibility of dried maize in cows ensued when the modulus of fineness lay within the range 4·7–3·0 and with high moisture maize from 5·4 to 5·1. A study was made of the effect of particle size on the rate of digestion of maize suspended in nylon bags in the rumen. Evidence was presented showing the importance of rumination in ensuring the digestion of intact kernels. Possible causes of differences between cows in their ability to digest intact maize kernels are discussed.


The development of the mammary glands follows the same course during all first pregnancies, regardless of the time of the breeding season. When a second or third pregnancy occurs at the beginning of the breeding season, the development of the glands during the pregnancy resembles the development during the first pregnancy once the embryos have reached the primary amniotic cavity stage. In all other pregnancies the development is complicated by a concurrent lactation and later involution. However, the structure of the glands during lactation is essentially the same, regardless of which pregnancy it follows, and of whether the lactation overlaps with a subsequent pregnancy, or occurs during anoestrus. Therefore it seems that the presence of developing embryos does not influence the course of lactation in any way. Owing to this similarity, the structure of the glands is the same in both the second and third pregnancies until the developing embryos are approximately 5 mm long, if the pregnancy occurs during the middle or at the end of the breeding season. It appears that the young are weaned when the developing embryos reach this size, i.e. 5 mm long. However, the changes in the glands during involution are affected not only by the time of the breeding season, but also by the pregnancy of the individual animal. When involution occurs during anoestrus it proceeds until a final state, only slightly more developed than the virgin condition, is reached. When involution occurs concurrent with the next pregnancy it differs according to the pregnancy of the individual animal. After a third pregnancy, which commenced either at the beginning or during the middle of the breeding season, the animal usually dies of old age before involution is established, but after a first or second pregnancy commencing at these times, involution takes place during the subsequent pregnancy. In these animals the extent to which the involution proceeds is governed by the size attained by the developing embryos at that particular time. When the involution occurs during a second pregnancy, i.e. after the first period of lactation, the most involuted condition is found when the embryos are 32-6 mm long. When it occurs during a third pregnancy, i.e. after the second period of lactation, involution is completed earlier, when the embryos are only 13-7 mm long, and this involution is more pronounced than that occurring during the second pregnancy. It is difficult to explain why this first period of involution should be more gradual, and take so much longer than the second. Moreover, in the latter there is a definite point whereafter involution is striking and rapid; this does not occur during the first period of involution. The only feasible explanation I can offer is that possibly, during the first period of pregnancy, lactation, and then involution, the regular cycle has not yet been established in the mammary glands. After this stage they may be fully mature, and the cycle stabilized.


1977 ◽  
Vol 73 (2) ◽  
pp. 331-337 ◽  
Author(s):  
A. P. PAYNE

SUMMARY On day 1 after birth, male golden hamsters received either 300 μg of an androgen (testosterone propionate, testosterone, dihydrotestosterone or androstenedione) in 0·03 ml arachis oil, or oil alone. As intact adults, their aggressiveness towards unreceptive females was measured. After this, all animals were castrated. At least 3 weeks after the operation all animals received oestradiol benzoate (10 μg + progesterone (500 μg), after which their capacity to show patterns of female sexual behaviour towards a stud male was tested. Control hamsters which had received oil as neonates showed less aggression than the females with which they interacted; these controls also readily assumed lordosis after castration and priming with ovarian steroids. Conversely, animals which had received testosterone propionate or androstenedione neonatally were as aggressive as the female hamsters, and showed a markedly decreased ability to display lordotic behaviour after castration. The behaviour of male hamsters which received testosterone or dihydrotestosterone was unaffected. Thus, at the level of treatment used, increased aggressiveness appeared to co-vary with a decreased capacity to show female sexual behaviour patterns. However, within each treatment there was little evidence of such a relationship at the level of the individual animal.


Animals ◽  
2020 ◽  
Vol 10 (8) ◽  
pp. 1270
Author(s):  
Hyunjin Cho ◽  
Seoyoung Jeon ◽  
Mingyung Lee ◽  
Kyewon Kang ◽  
Hamin Kang ◽  
...  

This study aimed to determine the factors affecting the body weight (BW) of Hanwoo steers by collecting a large number of BW measurements using an automated weighing system (AWS). The BW of 12 Hanwoo steers was measured automatically using an AWS for seven days each month over three months. On the fourth day of the BW measurement each month, an additional BW measurement was conducted manually. After removing the outliers of BW records, the deviations between the AWS records (a) and manual weighing records (b) were analyzed. BW measurement deviations (a − b) were significantly (p < 0.05) affected by month, day and the time within a day as well as the individual animal factor; however, unexplained random variations had the greatest impact (70.4%). Excluding unexplained random variations, the difference between individual steers was the most influential (80.1%). During the day, the BW of Hanwoo steers increased before feed offerings and significantly decreased immediately after (p < 0.05), despite the constant availability of feeds in the feed bunk. These results suggest that there is a need to develop pattern recognition algorithms that consider variations in individual animals and their feeding patterns for the analysis of BW changes in animals.


2005 ◽  
Vol 22 (3) ◽  
pp. 346-355 ◽  
Author(s):  
Robert A. Jolly ◽  
Keith M. Goldstein ◽  
Tao Wei ◽  
Hong Gao ◽  
Peining Chen ◽  
...  

Combining or pooling individual samples when carrying out transcript profiling using microarrays is a fairly common means to reduce both the cost and complexity of data analysis. However, pooling does not allow for statistical comparison of changes between samples and can result in a loss of information. Because a rigorous comparison of the identified expression changes from the two approaches has not been reported, we compared the results for hepatic transcript profiles from pooled vs. individual samples. Hepatic transcript profiles from a single-dose time-course rat study in response to the prototypical toxicants clofibrate, diethylhexylphthalate, and valproic acid were evaluated. Approximately 50% more transcript expression changes were observed in the individual (statistical) analysis compared with the pooled analysis. While the majority of these changes were less than twofold in magnitude (∼80%), a substantial number were greater than twofold (∼20%). Transcript changes unique to the individual analysis were confirmed by quantitative RT-PCR, while all the changes unique to the pooled analysis did not confirm. The individual analysis identified more hits per biological pathway than the pooled approach. Many of the transcripts identified by the individual analysis were novel findings and may contribute to a better understanding of molecular mechanisms of these compounds. Furthermore, having individual animal data provided the opportunity to correlate changes in transcript expression to phenotypes (i.e., histology) observed in toxicology studies. The two approaches were similar when clustering methods were used despite the large difference in the absolute number of transcripts changed. In summary, pooling reduced resource requirements substantially, but the individual approach enabled statistical analysis that identified more gene expression changes to evaluate mechanisms of toxicity. An individual animal approach becomes more valuable when the overall expression response is subtle and/or when associating expression data to variable phenotypic responses.


Author(s):  
G.E. Pollott ◽  
D.R. Guy

The use of ultra-sound scanning to estimate fat and muscle dimensions in live sheep is increasing in Britain. When used in the appropriate recording and genetic schemes these measurements, in conjunction with other information, can be used to estimate body composition in the live animal. Pollott and Guy (1992) have outlined the background and organisation of a sire-referencing scheme in the Suffolk breed, in Britain.The use of BLUP techniques in this scheme requires the use of appropriate genetic parameters derived using the same model as that used for BLUP estimations. Computer programs utilising the Derivative-Free Restricted Maximum Likelihood (DFREML) technique with the individual animal model have recently become available for use with on-farm recorded data (Meyer, 1989,1991). Data from the Suffolk Sire-Referencing Scheme Ltd (SSRS) were analysed, using DFREML procedures, to estimate the genetic parameters of the lean meat estimators used in the scheme.


Though tooth development in the mammals has been extensively studied, I had several objects in view when I decided to investigate the details of tooth development in Ornithorhynchus. The following are among the more important considerations which determined me to undertake this work. 1— Early Stages in the Differentiation the Dental Lamina and the Formation of the Enamel Organ The structure of the dental lamina and the stages in the early differentiation of the enamel organ have been carefully examined in representative groups by many observers, and by the beginning of this century the histological appearances of the dental lamina and its adnexa were well known. Yet the significance of some of the structures which are seen in the early stages of tooth development is still uncertain, and widely divergent views have been expressed, not only as to the interpretation of such structures in the individual animal, but also as to their possible value in the light of phylogenetic recapitulation.


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