Relative Importance of Stochastic Assembly Process of Membrane Biofilm Increased as Biofilm Aged

The relative importance of different ecological processes controlling biofilm community assembly over time on membranes with different surface characteristics has never been investigated in membrane bioreactors (MBRs). In this study, five ultrafiltration hollow-fiber membranes – having identical nominal pore size (0.1μm) but different hydrophobic or hydrophilic surface characteristics – were operated simultaneously in the same MBR tank with a constant flux of 10 liters per square meter per hour (LMH). In parallel, membrane modules operated without permeate flux (0 LMH) were submerged in the same MBR tank, to investigate the passive microbial adsorption onto different hydrophobic or hydrophilic membranes. Samples from the membrane biofilm were collected after 1, 10, 20, and 30days of continuous filtration. The membrane biofilm microbiome were investigated using 16S rRNA gene amplicon sequencing from DNA and cDNA samples. Similar beta diversity trends were observed for both DNA- and cDNA-based analyses. Beta diversity analyses revealed that the nature of the membrane surface (i.e., hydrophobic vs. hydrophilic) did not seem to have an effect in shaping the bacterial community, and a similar biofilm microbiome evolved for all types of membranes. Similarly, membrane modules operated with and without permeate flux did not significantly influence alpha and beta diversity of the membrane biofilm. Nevertheless, different-aged membrane biofilm samples exhibited significant differences. Proteobacteria was the most dominant phylum in early-stage membrane biofilm after 1 and 10days of filtration. Subsequently, the relative reads abundance of the phyla Bacteroidetes and Firmicutes increased within the membrane biofilm communities after 20 and 30days of filtration, possibly due to successional steps that lead to the formation of a relatively aged biofilm. Our findings indicate distinct membrane biofilm assembly patterns with different-aged biofilm. Ecological null model analyses revealed that the assembly of early-stage biofilm community developed after 1 and 10days of filtration was mainly governed by homogenous selection. As the biofilm aged (days 20 and 30), stochastic processes (e.g., ecological drift) started to become important in shaping the assembly of biofilm community.

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Interactive network configuration maintains bacterioplankton community structure under elevated CO<sub>2</sub> in a eutrophic coastal mesocosm experiment

Biogeosciences ◽

10.5194/bg-15-551-2018 ◽

2018 ◽

Vol 15 (2) ◽

pp. 551-565 ◽

Cited By ~ 4

Author(s):

Xin Lin ◽

Ruiping Huang ◽

Yan Li ◽

Futian Li ◽

Yaping Wu ◽

...

Keyword(s):

Community Structure ◽

Elevated Co2 ◽

Phytoplankton Bloom ◽

Southern China ◽

Early Stage ◽

Mesocosm Experiment ◽

Rrna Gene ◽

Ecological Processes ◽

Bacterioplankton Community ◽

Carbon Pump

Abstract. There is increasing concern about the effects of ocean acidification on marine biogeochemical and ecological processes and the organisms that drive them, including marine bacteria. Here, we examine the effects of elevated CO2 on the bacterioplankton community during a mesocosm experiment using an artificial phytoplankton community in subtropical, eutrophic coastal waters of Xiamen, southern China. Through sequencing the bacterial 16S rRNA gene V3-V4 region, we found that the bacterioplankton community in this high-nutrient coastal environment was relatively resilient to changes in seawater carbonate chemistry. Based on comparative ecological network analysis, we found that elevated CO2 hardly altered the network structure of high-abundance bacterioplankton taxa but appeared to reassemble the community network of low abundance taxa. This led to relatively high resilience of the whole bacterioplankton community to the elevated CO2 level and associated chemical changes. We also observed that the Flavobacteria group, which plays an important role in the microbial carbon pump, showed higher relative abundance under the elevated CO2 condition during the early stage of the phytoplankton bloom in the mesocosms. Our results provide new insights into how elevated CO2 may influence bacterioplankton community structure.

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Key Community Assembly Processes Switch between Scales in Shaping Beta Diversity in Two Primary Forests, Southwest China

Forests ◽

10.3390/f11101106 ◽

2020 ◽

Vol 11 (10) ◽

pp. 1106

Author(s):

Mengesha Asefa ◽

Han-Dong Wen ◽

Min Cao ◽

Yue-Hua Hu

Keyword(s):

Community Assembly ◽

Beta Diversity ◽

Spatial Scales ◽

Process Models ◽

Small Scale ◽

Life Stages ◽

Relative Importance ◽

Vegetation Types ◽

Ecological Processes ◽

Environmental Selection

Environmental and dispersal-based processes have been widely investigated for the understanding of community assembly. However, the relative importance of these ecological processes across spatial scales, life history stages and forest types needs to be largely studied. We test the variability of ecological processes in shaping tree community composition across life stages and spatial scales, and in particular, the hypothesis that dispersal limitation dominates at smaller scales and early life stages, but environmental filtering at larger scales and later life stages. We used spatially explicit point process models to estimate the relative importance of environmental and dispersal processes and their combined effect on beta diversity across spatial scales and life stages in tropical and subtropical forests. These models fit the observed species distribution pattern and generated realizations of the fitted models for each species. We found that the importance of environmental and dispersal processes did not shift with life stages or vegetation types, but did with spatial scales. Dispersal provided the best explanation of large-scale patterns, but dispersal combined with environmental selection was superior for small-scale patterns. In conclusion, we confirm the importance of spatial scale for the effects and identification of community assembly mechanisms. Our results also suggest that the importance of both dispersal and environmental processes for community assembly could be pervasive across life stages and vegetation types. The generality of these findings should be tested further in different vegetation types and life stages to assess whether specific ecological processes have consistent effects on community structure across life stages and vegetation types.

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The Growth of Leaf Lettuce and Bacterial Communities in a Closed Aquaponics System with Catfish

Horticulturae ◽

10.3390/horticulturae7080222 ◽

2021 ◽

Vol 7 (8) ◽

pp. 222

Author(s):

Kenji Yamane ◽

Yuuki Kimura ◽

Keita Takahashi ◽

Isamu Maeda ◽

Masayuki Iigo ◽

...

Keyword(s):

Plant Growth ◽

Early Stage ◽

Amplicon Sequencing ◽

Small Scale ◽

Rrna Gene ◽

Culture Solution ◽

Beneficial Effects ◽

Sustainable Cultivation ◽

Microbial Groups ◽

Production Period

Aquaponics is a circulating and sustainable system that combines aquaculture and hydroponics and forms a symbiotic relationship between fish, plants, and microorganisms. We hypothesized that feed alone could support plant growth, but the symbiosis with fish adds some beneficial effects on plant growth in aquaponics. In this study, we created three closed culture systems, namely, aquaponics, hydroponics without nitrogen (N) and phosphorus (P), and aquaculture, and added the same amount of feed containing N and P to all the treatments in order to test the hypothesis. Accumulation of NO3− and PO43− was alleviated in aquaponics and hydroponics as a result of plant uptake. Lettuce plants grown in aquaponics grew vigorously until 2 weeks and contained a constant level of N in plants throughout the production period, whereas those in hydroponics grew slowly in the early stage and then vigorously after 2 weeks with a late increment of N concentration. These results suggest that catfish help with the faster decomposition of the feed, but, in hydroponics, feed can be slowly dissolved and decomposed owing to the absence of the fish. The bacterial community structures of the culture solution were investigated using 16S rRNA gene amplicon sequencing. At the class level, Actinobacteria, Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria were the major microbial groups in the solutions. Aquaponics prevented the pollution of tank solution and maintained a higher water quality compared with hydroponics and aquaculture, suggesting that aquaponics is a more sustainable cultivation system even in a small-scale system.

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Effect of Bovine MFGM and LF in Infant Formula on Gut Microbiome and Metabolome at Four Months of Age

Current Developments in Nutrition ◽

10.1093/cdn/nzab027 ◽

2021 ◽

Author(s):

Maciej Chichlowski ◽

Nicholas Bokulich ◽

Cheryl L Harris ◽

Jennifer L Wampler ◽

Fei Li ◽

...

Keyword(s):

Infant Formula ◽

Beta Diversity ◽

Milk Fat ◽

Alpha Diversity ◽

Illumina Miseq ◽

Rrna Gene ◽

Term Infants ◽

Linear Discriminant ◽

Alpha And Beta Diversity ◽

Metabolite Profiles

Abstract Background Milk fat globule membrane (MFGM) and lactoferrin (LF) are human milk bioactive components demonstrated to support gastrointestinal (GI) and immune development. Significantly fewer diarrhea and respiratory-associated adverse events through 18 months of age were previously reported in healthy term infants fed a cow's milk-based infant formula with added source of bovine MFGM and bovine LF through 12 months of age. Objectives To compare microbiota and metabolite profiles in a subset of study participants. Methods Stool samples were collected at Baseline (10–14 days of age) and Day 120 (MFGM + LF: 26, Control: 33). Bacterial community profiling was performed via16S rRNA gene sequencing (Illumina MiSeq) and alpha and beta diversity were analyzed (QIIME 2). Differentially abundant taxa were determined using Linear discriminant analysis effect size (LefSE) and visualized (Metacoder). Untargeted stool metabolites were analyzed (HPLC/mass spectroscopy) and expressed as the fold-change between group means (Control: MFGM + LF ratio). Results Alpha diversity increased significantly in both groups from baseline to 4 months. Subtle group differences in beta diversity were demonstrated at 4 months (Jaccard distance; R2 = 0.01, P = 0.042). Specifically, Bacteroides uniformis and Bacteroides plebeius were more abundant in the MFGM + LF group at 4 months. Metabolite profile differences for MFGM + LF vs Control included: lower fecal medium chain fatty acids, deoxycarnitine, and glycochenodeoxycholate, and some higher fecal carbohydrates and steroids (P < 0.05). After applying multiple test correction, the differences in stool metabolomics were not significant. Conclusions Addition of bovine MFGM and LF in infant formula was associated with subtle differences in stool microbiome and metabolome by four months of age, including increased prevalence of Bacteroides species. Stool metabolite profiles may be consistent with altered microbial metabolism. Trial registration: https://clinicaltrials.gov/ct2/show/NCT02274883).

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The Fecal Bacterial Microbiota in Horses with Equine Recurrent Uveitis

Animals ◽

10.3390/ani11030745 ◽

2021 ◽

Vol 11 (3) ◽

pp. 745

Author(s):

Michelle Martin de Bustamante ◽

Diego Gomez ◽

Jennifer MacNicol ◽

Ralph Hamor ◽

Caryn Plummer

Keyword(s):

Beta Diversity ◽

High Throughput Sequencing ◽

Illumina Miseq ◽

Diversity Indices ◽

Rrna Gene ◽

Linear Discriminant ◽

Alpha And Beta Diversity ◽

Bacterial Microbiota ◽

Healthy Control ◽

Equine Recurrent Uveitis

The objective of this study was to describe and compare the fecal bacterial microbiota of horses with equine recurrent uveitis (ERU) and healthy horses using next-generation sequencing techniques. Fecal samples were collected from 15 client-owned horses previously diagnosed with ERU on complete ophthalmic examination. For each fecal sample obtained from a horse with ERU, a sample was collected from an environmentally matched healthy control with no evidence of ocular disease. The Illumina MiSeq sequencer was used for high-throughput sequencing of the V4 region of the 16S rRNA gene. The relative abundance of predominant taxa, and alpha and beta diversity indices were calculated and compared between groups. The phyla Firmicutes, Bacteroidetes, Verrucomicrobia, and Proteobacteria predominated in both ERU and control horses, accounting for greater than 60% of sequences. Based on linear discriminant analysis effect size (LEfSe), no taxa were found to be enriched in either group. No significant differences were observed in alpha and beta diversity indices between groups (p > 0.05 for all tests). Equine recurrent uveitis is not associated with alteration of the gastrointestinal bacterial microbiota when compared with healthy controls.

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Hydrophylicity Enhancement of Modified Cellulose Acetate Membrane to Improve the Membrane Performance in Produced Water Treatment

MATEC Web of Conferences ◽

10.1051/matecconf/201815608003 ◽

2018 ◽

Vol 156 ◽

pp. 08003 ◽

Cited By ~ 1

Author(s):

Tutuk Djoko Kusworo ◽

Danny Soetrisnanto ◽

Cynthia Santoso ◽

Tyas Dwi Payanti ◽

Dani Puji Utomo

Keyword(s):

Water Treatment ◽

Produced Water ◽

Uv Light ◽

Light Exposure ◽

Membrane Surface ◽

Asymmetric Structure ◽

Dense Layer ◽

Cellulose Acetate Membrane ◽

Permeate Flux ◽

Produced Water Treatment

Produced water is a wastewater generated from petroleum industry with high concentration of pollutants such as Total Dissolved Solid, Organic content, and Oil and grease. Membrane technology has been currently applied for produced water treatment due to its efficiency, compact, mild and clean process. The main problem of produced water using membrane is fouling on the membrane surface which causes on low permeate productivity. This paper is majority focused on the improvement of anti-fouling performance through several modifications to increase CA membrane hydrophilicity. The membrane was prepared by formulating the dope solution consists of 18 wt-% CA polymer, acetone, and PEG additive (3 wt-%, 5 wt-%, and 7 wt-%). The membranes are casted using NIPS method and being irradiated under UV light exposure. The SEM images show that parepared membrane has asymmetric structure consist of dense layer, intermediete layer, and finger-like support layer. The filtration test shows that PEG addition increase the membrane hydrophilicity and the permeate flux increases. UV light exposure on the membrane improves the membrane stability and hydrophilicity. The imrpovement of membrane anti-fouling performance is essential to achieve the higher productivity without lowering its pollutants rejection.

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Submerged Ultrafiltration for Minimizing Energy Process of Refinery Wastewater Treatment

Advanced Materials Research ◽

10.4028/www.scientific.net/amr.789.531 ◽

2013 ◽

Vol 789 ◽

pp. 531-537

Author(s):

Erna Yuliawati ◽

Ahmad Fauzi Ismail

Keyword(s):

Wastewater Treatment ◽

Polyvinylidene Fluoride ◽

Membrane Surface ◽

Suspended Solid ◽

Hollow Fibers ◽

Refinery Wastewater ◽

Permeate Flux ◽

Energy Process ◽

Oil Refineries ◽

And Performance

Refinery wastewater treatment is needed especially in the oil-producing arid regions such as oil refineries due to water scarcity. One of potentially applicable process to treat refinery wastewater is a submerged membrane technology. However, the application of submerged membrane systems for industrial wastewater treatment is still in its infancy due to significant variety in wastewater composition and high operational costs. Aim of this study was to investigate ultrafiltration (UF) membrane morphology and performance for refinery produced wastewater treatment. Submerged UF bundle was equipped using polyvinylidene fluoride (PVDF) hollow fibers, which added by dispersing lithium chloride monohydrate (LiCl.H2O) and titanium dioxide (TiO2). The comparison of morphological and performance tests was conducted on prepared PVDF ultrafiltration membranes. Distinctive changes were observed in membrane characteristics in term of membrane wettability, tensile testing and roughness measurement. Mean pore size and surface porosity were calculated based on permeate flux. Fouling characteristics for hydrophilic PVDF hollow fibers fouled with suspended solid matter was also investigated. Mixed liquor suspended solid (MLSS) of 3 g/L and 4.5 g/L were assessed by using submerged PVDF membrane with varied air bubble flow rates. Results showed that effect of air bubbles flow rate of 2.4 ml/min increased flux, total suspended solids (TSS) and sulfide removal of 148.82 L/m2h, 99.82 % and 89.2%, respectively due to increase of turbulence around fibers, which exerts shear stress to minimize particles deposited on membrane surface. It was concluded that submerged ultrafiltration is an available option to minimize energy process for treating such wastewater solution.

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Concentration of FeSO4 spent solutions by membrane distillation

Polish Journal of Chemical Technology ◽

10.2478/v10026-007-0016-9 ◽

2007 ◽

Vol 9 (2) ◽

pp. 15-18 ◽

Cited By ~ 2

Author(s):

Marek Gryta

Keyword(s):

Potential Application ◽

Ph Value ◽

Membrane Surface ◽

Membrane Distillation ◽

Permeate Flux ◽

Salt Solutions ◽

Iron Compounds ◽

Fast Decline ◽

Waste Salt

Concentration of FeSO4 spent solutions by membrane distillation The possibility of potential application of membrane distillation for the concentration of waste salt solutions has been presented in this work. It was found that the oxidation of iron compounds takes place during the process that was associated with the formation of a layer of oxides on the membrane surface. A fast decline of the permeate flux was observed due to the scaling phenomena. The problem of scaling was eliminated by the acidification with H2SO4 of the feed to the pH value of 2.

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AB1232 ORAL DYSBIOSIS REFLECTS THE IMMUNOLOGICAL ALTERATION OF RA REGARDING TO ACPA AND HLA DRB1*SE: NAGASAKI ISLAND STUDY

Annals of the Rheumatic Diseases ◽

10.1136/annrheumdis-2020-eular.5147 ◽

2020 ◽

Vol 79 (Suppl 1) ◽

pp. 1907.2-1907

Author(s):

Y. Tsuji ◽

M. Tamai ◽

S. Morimoto ◽

D. Sasaki ◽

M. Nagayoshi ◽

...

Keyword(s):

Beta Diversity ◽

Healthy Subjects ◽

Microbial Community Composition ◽

Alpha Diversity ◽

Enzyme Linked Immunosorbent Assay ◽

Rrna Gene ◽

Oral Microbiota ◽

Unifrac Distance ◽

Alpha And Beta Diversity ◽

The Difference

Background:Anti-citrullinated protein antibody (ACPA) production is observed in several organs even prior to the onset of rheumatoid arthritis (RA), and oral mucosa is considered to be one of the important tissues. The presence of HLA-DRB1*SE closely associates with ACPA production. Saliva is considered to reflect the oral microbiota including periodontal disease. Alteration of oral microbiota of RA becomes to be normalized by DMARDs treatment, however, the interaction of HLA-DRB1*SE, ACPA and oral microbiota of RA patients remains to be elucidated.Objectives:The Nagasaki Island Study, which had started in 2014 collaborating with Goto City, is intended for research of the preclinical stage of RA, including ACPA/HLA genotype screening and ultrasound and magnetic resonance imaging examinations in high-risk subjects. Using the samples accumulated in this cohort, we have tried to investigate the difference of oral microbiota among RA patients and healthy subjects regarding to ACPA and HLA-DRB1*SE.Methods:Blood and salivary samples were obtained from 1422 subjects out of 4276 who have participated in the Nagasaki Island Study from 2016 to 2018. ACPA positivity was 1.7 % in total. Some of RA patients resided in Goto City participated in the Nagasaki Island Study. At this point, we selected 291 subjects, who were ACPA positive non-RA healthy subjects (n=22) and patients with RA (n=33, 11 subjects were ACPA positive and 22 ACPA negative respectively) as the case, age and gender matched ACPA negative non-RA healthy subjects (n=236) as the control. ACPA was measured by an enzyme-linked immunosorbent assay, and HLA genotyping was quantified by next-generation sequencing (Ref.1). The operational taxonomic unit (OUT) analysis using 16S rRNA gene sequencing were performed. The richness of microbial diversity within-subject (alpha diversity) was scaled via Shannon entropy. The dissimilarity between microbial community composition was calculated using Bray-Curtis distance as a scale, and differences between groups (beta diversity) were tested by permutational multivariate analysis of variance (PERMANOVA). In addition, UniFrac distance calculated in consideration of the distance on the phylogenetic tree were performed.Results:Median age 70 y.o., % Female 58.8 %. Among RA and non-RA subjects, not alpha diversity but beta diversity was statistically significance (p=0.022, small in RA). In RA subjects, both alpha and beta diversity is small (p<0.0001), especially significant in ACPA positive RA (Figure 1). Amongt RA subjects, presence of HLA-DRB1*SE did not show the difference but the tendency of being small of alpha diversity (p=0.29).Conclusion:Our study has suggested for the first time the association of oral microbiota alteration with the presence of ACPA and HLA-DRB1*SE. Oral dysbiosis may reflect the immunological status of patients with RA.References:[1]Kawaguchi S, et al. Methods Mol Biol 2018;1802: 22Disclosure of Interests:None declared

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PSIX-3 Comparison of 16S rRNA gene profiles of rumen microbiome from Raramuri Criollo, European and Criollo x European lineages

Journal of Animal Science ◽

10.1093/jas/skab235.789 ◽

2021 ◽

Vol 99 (Supplement_3) ◽

pp. 441-442

Author(s):

Adrian Maynez-Perez ◽

Francisco Jahuey-Martinez ◽

Jose A Martinez-Quintana ◽

Michael E Hume ◽

Robin C Anderson ◽

...

Keyword(s):

16S Rrna ◽

16S Rrna Gene ◽

Beta Diversity ◽

Chihuahuan Desert ◽

Reference Database ◽

Rrna Gene ◽

Linear Discriminant ◽

Microbiome Composition ◽

Northern Mexico ◽

Rumen Microbiome

Abstract Raramuri Criollo cattle from the Chihuahuan desert in northern Mexico have been described as an ecological ecotype due to their enormous advantage in land grass utilization and their capacity to diversify their diet with cacti, forbs and woody plants. This diversification in diet utilization, could reflect upon their microbiome composition. The aim of this study was to characterize the rumen microbiome of Raramuri criollo cattle and to compare it to other lineages that graze in the same area. A total of 28 cows representing three linages [Criollo (n = 13), European (n = 9) and Criollo x European Crossbred (n = 6)] were grazed without supplementation for 45 days. DNA was extracted from ruminal samples and the V4 region of the 16S rRNA gene was sequenced on an Illumina platform. Data were analyzed with the QIIME2 software package and DADA2 plugin and the amplicon sequence variants were taxonomically classified with naïve Bayesian using the SILVA 16S rRNA gene reference database (version 132). Statistical analysis was performed by ANOVA and PERMANOVA for alpha and beta diversity indexes, respectively, and the non-strict version of linear discriminant analysis effect size (LEfSe) was used to determine significantly different taxa among lineages. Differences in beta diversity indexes (P < 0.05) were found in ruminal microbiome composition between Criollo and European groups, whereas the Crossbred showed intermediate values when compared to the pure breeds (Table 1). LEfSe analysis identified a total of 20 bacterial groups that explained differences between lineages, including one for Crossbreed, ten for European and nine for Criollo. These results show ruminal microbiome differences between Raramuri criollo cattle and the mainstream European breeds used in the northern Mexico Chihuahuan desert and reflect that those differences could be a consequence of dissimilar grazing behavior.

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