scholarly journals Benefits to Plant Health and Productivity From Enhancing Plant Microbial Symbionts

2021 ◽  
Vol 11 ◽  
Author(s):  
Gary Harman ◽  
Ram Khadka ◽  
Febri Doni ◽  
Norman Uphoff
Keyword(s):  
Management Practices ◽  
Antibiotic Production ◽  
Close Association ◽  
Nutrient Use Efficiency ◽  
Plant Diseases ◽  
Root Decomposition ◽  
Biotic Stresses ◽  
Microbe Interactions ◽  
Microbial Symbionts ◽  
Bacteria And Fungi

Plants exist in close association with uncountable numbers of microorganisms around, on, and within them. Some of these endophytically colonize plant roots. The colonization of roots by certain symbiotic strains of plant-associated bacteria and fungi results in these plants performing better than plants whose roots are colonized by only the wild populations of microbes. We consider here crop plants whose roots are inhabited by introduced organisms, referring to them as Enhanced Plant Holobionts (EPHs). EPHs frequently exhibit resistance to specific plant diseases and pests (biotic stresses); resistance to abiotic stresses such as drought, cold, salinity, and flooding; enhanced nutrient acquisition and nutrient use efficiency; increased photosynthetic capability; and enhanced ability to maintain efficient internal cellular functioning. The microbes described here generate effects in part through their production of Symbiont-Associated Molecular Patterns (SAMPs) that interact with receptors in plant cell membranes. Such interaction results in the transduction of systemic signals that cause plant-wide changes in the plants’ gene expression and physiology. EPH effects arise not only from plant-microbe interactions, but also from microbe-microbe interactions like competition, mycoparasitism, and antibiotic production. When root and shoot growth are enhanced as a consequence of these root endophytes, this increases the yield from EPH plants. An additional benefit from growing larger root systems and having greater photosynthetic capability is greater sequestration of atmospheric CO2. This is transferred to roots where sequestered C, through exudation or root decomposition, becomes part of the total soil carbon, which reduces global warming potential in the atmosphere. Forming EPHs requires selection and introduction of appropriate strains of microorganisms, with EPH performance affected also by the delivery and management practices.

scholarly journals The Role of Fungi in the Cocoa Production Chain and the Challenge of Climate Change

2021 ◽  
Vol 7 (3) ◽  
pp. 202
Author(s):  
Johannes Delgado-Ospina ◽  
Junior Bernardo Molina-Hernández ◽  
Clemencia Chaves-López ◽  
Gianfranco Romanazzi ◽  
Antonello Paparella
Keyword(s):  
Climate Change ◽  
Fungal Infections ◽  
Close Association ◽  
Pathogenic Fungi ◽  
Fungal Species ◽  
Mitigation Strategies ◽  
Plant Diseases ◽  
Production Chain ◽  
Cocoa Production

Background: The role of fungi in cocoa crops is mainly associated with plant diseases and contamination of harvest with unwanted metabolites such as mycotoxins that can reach the final consumer. However, in recent years there has been interest in discovering other existing interactions in the environment that may be beneficial, such as antagonism, commensalism, and the production of specific enzymes, among others. Scope and approach: This review summarizes the different fungi species involved in cocoa production and the cocoa supply chain. In particular, it examines the presence of fungal species during cultivation, harvest, fermentation, drying, and storage, emphasizing the factors that possibly influence their prevalence in the different stages of production and the health risks associated with the production of mycotoxins in the light of recent literature. Key findings and conclusion: Fungi associated with the cocoa production chain have many different roles. They have evolved in a varied range of ecosystems in close association with plants and various habitats, affecting nearly all the cocoa chain steps. Reports of the isolation of 60 genera of fungi were found, of which only 19 were involved in several stages. Although endophytic fungi can help control some diseases caused by pathogenic fungi, climate change, with increased rain and temperatures, together with intensified exchanges, can favour most of these fungal infections, and the presence of highly aggressive new fungal genotypes increasing the concern of mycotoxin production. For this reason, mitigation strategies need to be determined to prevent the spread of disease-causing fungi and preserve beneficial ones.

scholarly journals Antimicrobial Activities of Marine Sponge-Associated Bacteria

2021 ◽  
Vol 9 (1) ◽  
pp. 171
Author(s):  
Yitayal S. Anteneh ◽  
Qi Yang ◽  
Melissa H. Brown ◽  
Christopher M. M. Franco
Keyword(s):  
Pathogenic Bacteria ◽  
South Australia ◽  
Multidrug Resistant ◽  
Antimicrobial Activities ◽  
Marine Sponges ◽  
Bioactive Metabolites ◽  
Human Pathogens ◽  
Sponge Associated Bacteria ◽  
Microbial Symbionts ◽  
Bacteria And Fungi

The misuse and overuse of antibiotics have led to the emergence of multidrug-resistant microorganisms, which decreases the chance of treating those infected with existing antibiotics. This resistance calls for the search of new antimicrobials from prolific producers of novel natural products including marine sponges. Many of the novel active compounds reported from sponges have originated from their microbial symbionts. Therefore, this study aims to screen for bioactive metabolites from bacteria isolated from sponges. Twelve sponge samples were collected from South Australian marine environments and grown on seven isolation media under four incubation conditions; a total of 1234 bacterial isolates were obtained. Of these, 169 bacteria were tested in media optimized for production of antimicrobial metabolites and screened against eleven human pathogens. Seventy bacteria were found to be active against at least one test bacterial or fungal pathogen, while 37% of the tested bacteria showed activity against Staphylococcus aureus including methicillin-resistant strains and antifungal activity was produced by 21% the isolates. A potential novel active compound was purified possessing inhibitory activity against S. aureus. Using 16S rRNA, the strain was identified as Streptomyces sp. Our study highlights that the marine sponges of South Australia are a rich source of abundant and diverse bacteria producing metabolites with antimicrobial activities against human pathogenic bacteria and fungi.

scholarly journals Size and Shape-Dependent Antimicrobial Activities of Silver and Gold Nanoparticles: A Model Study as Potential Fungicides

Molecules ◽  
2020 ◽  
Vol 25 (11) ◽  
pp. 2682 ◽  
Author(s):  
Francis J. Osonga ◽  
Ali Akgul ◽  
Idris Yazgan ◽  
Ayfer Akgul ◽  
Gaddi B. Eshun ◽  
...  
Keyword(s):  
Gold Nanoparticles ◽  
Pathogenic Fungi ◽  
Antimicrobial Activities ◽  
Plant Diseases ◽  
Production Plant ◽  
Silver And Gold Nanoparticles ◽  
Size And Shape ◽  
Model Study ◽  
Pathogenic Microbes ◽  
Bacteria And Fungi

Plant-based pathogenic microbes hinder the yield and quality of food production. Plant diseases have caused an increase in food costs due to crop destruction. There is a need to develop novel methods that can target and mitigate pathogenic microbes. This study focuses on investigating the effects of luteolin tetraphosphate derived silver nanoparticles (LTP-AgNPs) and gold nanoparticles (LTP-AuNPs) as a therapeutic agent on the growth and expression of plant-based bacteria and fungi. In this study, the silver and gold nanoparticles were synthesized at room temperature using luteolin tetraphosphate (LTP) as the reducing and capping agents. The synthesis of LTP-AgNPs and LTP-AuNP was characterized by Transmission Electron Microscopy (TEM) and size distribution. The TEM images of both LTP-AgNPs and LTP-AuNPs showed different sizes and shapes (spherical, quasi-spherical, and cuboidal). The antimicrobial test was conducted using fungi: Aspergillus nidulans, Trichaptum biforme, Penicillium italicum, Fusarium oxysporum, and Colletotrichum gloeosporioides, while the class of bacteria employed include Pseudomonas aeruginosa, Aeromonas hydrophila, Escherichia coli, and Citrobacter freundii as Gram (−) bacteria, and Listeria monocytogenes and Staphylococcus epidermidis as Gram (+) bacterium. The antifungal study demonstrated the selective size and shape-dependent capabilities in which smaller sized spherical (9 nm) and quasi-spherical (21 nm) AgNPs exhibited 100% inhibition of the tested fungi and bacteria. The LTP-AgNPs exhibited a higher antimicrobial activity than LTP-AuNPs. We have demonstrated that smaller sized AgNPs showed excellent inhibition of A. nidulans growth compared to the larger size nanoparticles. These results suggest that LTP-AuNP and LTP-AgNPs could be used to address the detection and remediation of pathogenic fungi, respectively.

scholarly journals Analysis of a Monitoring System for Bacterial Wilt Management by Seed Potato Cooperatives in Ethiopia: Challenges and Future Directions

2020 ◽  
Vol 12 (9) ◽  
pp. 3580
Author(s):  
Shiferaw Tafesse ◽  
Rico Lie ◽  
Barbara van Mierlo ◽  
Paul C. Struik ◽  
Berga Lemaga ◽  
...  
Keyword(s):  
Collective Action ◽  
Monitoring System ◽  
Seed Potato ◽  
Bacterial Wilt ◽  
Management Practices ◽  
Complex Disease ◽  
Essential Elements ◽  
Plant Diseases ◽  
Future Research ◽  
Monitoring Systems

Collective action is required to deal with various complex agricultural problems such as invasive weeds and plant diseases that pose a collective risk to farmers. Monitoring systems could help to stimulate collective action and avoid free-riding. The paper develops a novel framework consisting of essential elements of a monitoring system for managing a complex disease like bacterial wilt in potato crops. The framework is used to explore how seed potato cooperatives in Ethiopia operationalised the essential elements of a monitoring system and identifies which challenges remain to be overcome. Data were collected through in-depth interviews, reflective workshops, participant observation, and document analysis. We found that the cooperatives had organised a self-monitoring system to monitor disease occurrence and the disease management practices of their members. Monitoring committees were in charge of the data collection and enforcement of sanctions on farmers who did not adhere to the cooperatives’ bylaws. The main challenges included the dependency on visual observation, which does not disclose latent infections, limited financial incentives for the monitoring committee members, lack of trust, weak peer monitoring, and the social and ecological interdependency between producers of ware and seed potatoes. Suggestions are provided to strengthen the monitoring systems of farmers’ seed potato cooperatives in Ethiopia. In addition, we discuss the broader value of our novel framework for describing and analysing monitoring systems for future research and intervention.

Not all animals need a microbiome

2019 ◽  
Vol 366 (10) ◽  
Author(s):  
Tobin J Hammer ◽  
Jon G Sanders ◽  
Noah Fierer
Keyword(s):  
Dna Sequencing ◽  
Small Proportion ◽  
Microbial Growth ◽  
The Other ◽  
Microbial Colonization ◽  
Complete Understanding ◽  
Host Fitness ◽  
Microbe Interactions ◽  
Animal Phylogeny ◽  
Microbial Symbionts

ABSTRACTIt is often taken for granted that all animals host and depend upon a microbiome, yet this has only been shown for a small proportion of species. We propose that animals span a continuum of reliance on microbial symbionts. At one end are the famously symbiont-dependent species such as aphids, humans, corals and cows, in which microbes are abundant and important to host fitness. In the middle are species that may tolerate some microbial colonization but are only minimally or facultatively dependent. At the other end are species that lack beneficial symbionts altogether. While their existence may seem improbable, animals are capable of limiting microbial growth in and on their bodies, and a microbially independent lifestyle may be favored by selection under some circumstances. There is already evidence for several ‘microbiome-free’ lineages that represent distantly related branches in the animal phylogeny. We discuss why these animals have received such little attention, highlighting the potential for contaminants, transients, and parasites to masquerade as beneficial symbionts. We also suggest ways to explore microbiomes that address the limitations of DNA sequencing. We call for further research on microbiome-free taxa to provide a more complete understanding of the ecology and evolution of macrobe-microbe interactions.

scholarly journals Secondary Metabolites Produced by Macrophomina phaseolina Isolated from Eucalyptus globulus

Agriculture ◽  
2020 ◽  
Vol 10 (3) ◽  
pp. 72 ◽  
Author(s):  
Maria Michela Salvatore ◽  
Carina Félix ◽  
Fernanda Lima ◽  
Vanessa Ferreira ◽  
Daniele Naviglio ◽  
...  
Keyword(s):  
Secondary Metabolites ◽  
Eucalyptus Globulus ◽  
Macrophomina Phaseolina ◽  
Crop Productivity ◽  
Plant Diseases ◽  
Metabolite Profiles ◽  
Microbe Interactions ◽  
Metabolites Production ◽  
First Time

In the course of investigations on the role of secondary metabolites in plant-microbe interactions, the production of secondary metabolites by Macrophomina phaseolina isolates from Eucalyptus globulus, was studied. This fungus is responsible for several plant diseases which affect crop productivity and industry. Although secondary metabolites may play a role in disease development, there are very few reports on M. phaseolina metabolomics and, as far as we know, isolates from eucalypts have not been investigated for secondary metabolites production. In the present paper, metabolites typical of fungi, from the family Botryosphaeriaceae, were identified for the first time as products of M. phaseolina. Furthermore, the isolate under examination was grown in the presence and absence of host stem tissue, and metabolite profiles were compared. Five products are reported for the first time in this species and azelaic acid was exclusively produced in the presence of eucalypt stem. Finally, phytotoxicity and cytotoxicity tests of culture filtrates and crude organic extracts were also performed. Key Contribution: Lipophilic metabolites produced by M. phaseolina might play a role in the plant-fungus interactions responsible for serious diseases of E. globulus.

scholarly journals Sorghum Root Flavonoid Chemistry, Cultivar, and Frost Stress Effects on Rhizosphere Bacteria and Fungi

2020 ◽  
pp. PBIOMES-01-20-0
Author(s):  
Mara Cloutier ◽  
Debamalya Chatterjee ◽  
Dinakaran Elango ◽  
Jin Cui ◽  
Mary Ann Bruns ◽  
...  
Keyword(s):  
Fungal Infections ◽  
Genotypic Variation ◽  
Amplicon Sequencing ◽  
Total Flavonoid ◽  
Total Flavonoids ◽  
Biotic Stresses ◽  
Before And After ◽  
Frost Stress ◽  
Bacteria And Fungi ◽  
Rhizosphere Community

Biotic stresses, including fungal infections, result in increased production of flavonoid compounds, including 3-deoxyanthocyanidins (3-DAs), in the leaf tissues of Sorghum bicolor. Our objectives were to determine whether sorghum genotypic variation influenced root flavonoid and 3-DA concentrations and rhizosphere microbial communities and to identify how these relationships were affected by abiotic stress. We evaluated root chemicals and rhizosphere microbiomes of five near-isogenic lines of sorghum before and after a late-season frost. Roots were analyzed for total flavonoids, total phenolics, 3-DA concentrations, and antioxidant activity. Amplicon sequencing of 16S ribosomal RNA genes and internal transcribed spacer regions was performed on rhizosphere soils. Concentrations of luteolinidin (a 3-DA) and total flavonoids differed between several lines before frost; however, these relationships changed after frost. Luteolinidin increased in three lines after frost, whereas total flavonoids decreased in all the lines after frost. Lines that differed in luteolinidin and total flavonoid concentrations before frost were different from those after frost. Rhizosphere community compositions also differed before and after frost but only fungal community compositions differed among sorghum lines. Bacterial community compositions were highly correlated with total flavonoid and luteolinidin concentrations. Furthermore, a greater number of bacterial taxa were correlated with total flavonoids and luteolinidin compared with fungal taxa. Collectively, this study provides evidence that plant genotypic variation influences root flavonoids and rhizosphere community composition and that these relationships are affected by frost. Plant–microbe interactions and secondary metabolite production may be important components to include for selective breeding of sorghum for frost stress tolerance.

scholarly journals Soil Fertility Management for Better Crop Production

Agronomy ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 1349
Author(s):  
John Havlin ◽  
Ron Heiniger
Keyword(s):  
Soil Fertility ◽  
Crop Production ◽  
Management Practices ◽  
Nutrient Management ◽  
Root Zone ◽  
Nutrient Use Efficiency ◽  
Soil Nutrient ◽  
Crop Productivity ◽  
Soil Fertility Management ◽  
Fertility Management

Increasing crop productivity per unit of land area to meet future food and fiber demand increases both soil nutrient removal and the importance of replenishing soil fertility through efficient nutrient management practices. Significant progress in enhancing nutrient-use efficiency in production agriculture requires improved estimates of plant-available nutrients in the root zone, enhanced crop response to applied nutrients, and reduced offsite nutrient transport. This special issue, Soil Fertility Management for Better Crop Production, presents 15 manuscripts that advance our knowledge of interrelated soil, plant, and management factors important to increasing the nutrient availability and crop recovery of applied nutrients.

scholarly journals Friend, foe or food? Recognition and the role of antimicrobial peptides in gut immunity and Drosophila –microbe interactions

2016 ◽  
Vol 371 (1695) ◽  
pp. 20150295 ◽  
Author(s):  
Nichole A. Broderick
Keyword(s):  
Antimicrobial Peptides ◽  
Plant Material ◽  
Host Response ◽  
Evolutionary Ecology ◽  
Close Association ◽  
Food Recognition ◽  
Gut Immunity ◽  
Microbe Interactions ◽  
By Products

Drosophila melanogaster lives, breeds and feeds on fermenting fruit, an environment that supports a high density, and often a diversity, of microorganisms. This association with such dense microbe-rich environments has been proposed as a reason that D. melanogaster evolved a diverse and potent antimicrobial peptide (AMP) response to microorganisms, especially to combat potential pathogens that might occupy this niche. Yet, like most animals, D. melanogaster also lives in close association with the beneficial microbes that comprise its microbiota, or microbiome, and recent studies have shown that antimicrobial peptides (AMPs) of the epithelial immune response play an important role in dictating these interactions and controlling the host response to gut microbiota. Moreover, D. melanogaster also eats microbes for food, consuming fermentative microbes of decaying plant material and their by-products as both larvae and adults. The processes of nutrient acquisition and host defence are remarkably similar and use shared functions for microbe detection and response, an observation that has led to the proposal that the digestive and immune systems have a common evolutionary origin. In this manner, D. melanogaster provides a powerful model to understand how, and whether, hosts differentiate between the microbes they encounter across this spectrum of associations. This article is part of the themed issue ‘Evolutionary ecology of arthropod antimicrobial peptides’.

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