scholarly journals Comparative Analyses Reveal Peroxidases Play Important Roles in Soybean Tolerance to Aluminum Toxicity

Agronomy ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 670
Author(s):  
Juge Liu ◽  
Xiangting Wang ◽  
Ning Wang ◽  
Yang Li ◽  
Ting Jin ◽  
...  
Keyword(s):  
Candidate Genes ◽  
Aluminum Toxicity ◽  
Acid Soils ◽  
Al Toxicity ◽  
Al Tolerance ◽  
Al Stress ◽  
Important Barrier ◽  
Glycine Max L ◽  
Go Terms ◽  
H2o2 Pretreatment

Aluminum (Al) toxicity is an important barrier to soybean (Glycine max (L.) Merr.) production in acid soils. However, little is known about the genes underlying Al tolerance in soybean. We aim to find the key candidate genes and investigate their roles in soybean tolerance to Al toxicity in this study. Comparative transcriptome analyses of the Al-tolerant (KF) and Al-sensitive (GF) soybean varieties under control and Al stress at 6, 12, and 24 h were investigated. A total of 1411 genes showed specific up-regulation in KF or more up-regulation in KF than in GF by Al stress, which were significantly enriched in the GO terms of peroxidase (POD) activity, transporter activity (including the known Al tolerance-related ABC transporter, ALMT, and MATE), and four families of transcription factors (AP2, C3H4, MYB, WRKY). The expression levels of seven POD genes were up-regulated by Al stress for at least one time point in KF. The H2O2 pretreatment significantly improved Al tolerance of KF, which is likely due to increased POD activity induced by H2O2. Our results suggest that PODs play important roles in soybean tolerance to Al toxicity. We also propose a list of candidate genes for Al tolerance in KF, which would provide valuable insights into the Al tolerance mechanisms in soybean.

scholarly journals Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity

2020 ◽  
Vol 21 (12) ◽  
pp. 4316
Author(s):  
Lijuan Zhao ◽  
Jingjing Cui ◽  
Yuanyuan Cai ◽  
Songnan Yang ◽  
Juge Liu ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
Aluminum Toxicity ◽  
Metabolic Process ◽  
Al Toxicity ◽  
Regulation Of Transcription ◽  
Comparative Transcriptome ◽  
Al Tolerance ◽  
Comparative Transcriptome Analysis ◽  
Al Stress ◽  
Significant Difference

Aluminum (Al) toxicity is a major factor limiting crop productivity on acid soils. Soybean (Glycine max) is an important oil crop and there is great variation in Al tolerance in soybean germplasms. However, only a few Al-tolerance genes have been reported in soybean. Therefore, the purpose of this study was to identify candidate Al tolerance genes by comparative transcriptome analysis of two contrasting soybean varieties in response to Al stress. Two soybean varieties, M90-24 (M) and Pella (P), which showed significant difference in Al tolerance, were used for RNA-seq analysis. We identified a total of 354 Al-tolerance related genes, which showed up-regulated expression by Al in the Al-tolerant soybean variety M and higher transcript levels in M than P under Al stress. These genes were enriched in the Gene Ontology (GO) terms of cellular glucan metabolic process and regulation of transcription. Five out of 11 genes in the enriched GO term of cellular glucan metabolic process encode cellulose synthases, and one cellulose synthase gene (Glyma.02G205800) was identified as the key hub gene by co-expression network analysis. Furthermore, treatment of soybean roots with a cellulose biosynthesis inhibitor decreased the Al tolerance, indicating an important role of cellulose production in soybean tolerance to Al toxicity. This study provides a list of candidate genes for further investigation on Al tolerance mechanisms in soybean.

Evaluasi Galur Kedelai Transgenik Toleran Aluminium pada Fasilitas Uji Terbatas

2016 ◽  
Vol 35 (2) ◽  
pp. 155 ◽  
Author(s):  
Saptowo J. Pardal ◽  
Suharsono Suharsono
Keyword(s):  
Agricultural Development ◽  
Aluminum Toxicity ◽  
Acid Soil ◽  
Acid Soils ◽  
Acid Tolerance ◽  
Al Toxicity ◽  
Nutrient Deficiencies ◽  
Al Tolerance ◽  
Phenotypic Analysis ◽  
Soil Media

Some acid soil is potential for the agricultural development. Constraints for soybean production in the acid soils are Aluminum toxicity and macro nutrient deficiencies. Breeding for soybean varieties tolerant to acid soil is needed. This could be made through genetic engineering, by inserting acid tolerance genes into a soybean genome. Thirty one soybean lines (T0) had been obtained by insertion of Al tolerance genes (MaMt2) through an Agrobacterium mediated transformation, which nine of them contained MaMt2 gene based on PCR test. Further evaluation of those lines was carried out in the Biosafety Containment, where four T1 soybean lines were carrying MaMt2 gene, namely line GM2, GM5, GM10 and GM14. The study was aimed to evaluate the degree of tolerance of T2 generation of GM2, GM5, GM10 and GM14 lines to Al toxicity. Results showed that T2 line were able to grow in hygromicin media, indicating that those T2 lines were containing hygromicin resistant gene (hptII). Phenotypic analysis of T2 lines in four acid soil media treatments indicated that all lines could survive and grow on acid soil without liming and adding compost. GM2 line grew best on the acid medium than did other lines.

scholarly journals Uji Pendahuluan Genotipe-genotipe Kedelai Hasil Seleksi In Vitro terhadap Cekaman Aluminium dan pH Rendah

2016 ◽  
Vol 1 (2) ◽  
pp. 73
Author(s):  
Arief Vivi Noviati ◽  
Sri Hutami ◽  
Ika Mariska ◽  
Endang Sjamsudin
Keyword(s):  
Yield Components ◽  
Aluminum Toxicity ◽  
Acid Soil ◽  
Acid Soils ◽  
Mutation Breeding ◽  
Low Ph ◽  
Al Tolerance ◽  
Major Constraint ◽  
Gamma Irradiated

<p class="p1">Aluminum toxicity is a major constraint to soybean production in acid soils. Since variabilities on Al tolerance in plants are very limited, mutation breeding, and <em>in vitro </em>selection were used to increase the variability. Three soyben genotypes were produced from cultivars Wilis and Sindoro that have been gamma irradiated and selected <em>in vitro </em>for their tolerance to Al on Al and low pH media. These genotypes and their original cultivars were then planted in a greenhouse in an acid soil on May 2001. The results showed that the plant performances were varied, some were shorter and more compact than the original. Based on the yield components, a number of plants from the genotypes showed higher than those of the control cultivars. These plants were considered more tolerant to Al than the original cultivars.</p>

scholarly journals Karakter Root Re-Growth Sebagai Parameter Toleransi Aluminium pada Tanaman Padi

2012 ◽  
Vol 13 (1) ◽  
pp. 82
Author(s):  
Dewi Indriyani Roslim ◽  
Miftahudin Miftahudin ◽  
Utut Suharsono ◽  
Hajrial Aswidinnoor ◽  
Alex Hartana
Keyword(s):  
Upland Rice ◽  
Acid Soil ◽  
Rice Variety ◽  
Acid Soils ◽  
Al Tolerance ◽  
Rice Varieties ◽  
Al Stress ◽  
F2 Population ◽  
Nutrient Culture ◽  
Plant Breeding Program

Aluminum (Al) is one of the major limited factors in crop production on acid soils. Aluminum tolerant plants can beselected from plant breeding program by one of the physiological parameters representing Al tolerance character,such as root re-growth capability during recovery from the Al-stress. In this study we determined the concentrationand time exposure of Al stress that was able to differentiate the response of three local upland rice varieties(Grogol, Hawarabunar and Krowal) and an Al-sensitive rice variety (IR64) to Al-stress, and evaluated the effectivenessof root re-growth (RRG) characters as an Al tolerance parameter in rice. The study consisted of three experiments,which were 1) nutrient culture experiment with different Al concentration treatments in growth chamber, 2) potexperiment in greenhouse using Jasinga yellow red podzolic acid soil containing 26,66 me/100 g Al and pH 4,6 asplanting media, and 3) phenotyping of F2 population using RRG character. The results showed that Al treatment at15 ppm for 72 h was able to distinctly differentiate between Al-tolerant (Grogol and Hawarabunar) and Al-sensitivevarieties (Krowal and IR64). Planting of the rice varieties on acid soils showed similar result as that of the nutrientculture. Phenotyping of F2 population using RRG character indicated the existence of RRG value variation. Thesevariations demonstrated that RRG character can be used as an Al tolerance parameter in rice and therefore can beeffectively applied to screen rice F2 population that segregate to Al tolerance character.

scholarly journals Importance of Mineral Nutrition for Mitigating Aluminum Toxicity in Plants on Acidic Soils: Current Status and Opportunities

2018 ◽  
Vol 19 (10) ◽  
pp. 3073 ◽  
Author(s):  
Md. Rahman ◽  
Sang-Hoon Lee ◽  
Hee Ji ◽  
Ahmad Kabir ◽  
Chris Jones ◽  
...  
Keyword(s):  
Plant Growth ◽  
Mineral Nutrition ◽  
Aluminum Toxicity ◽  
Low Cost ◽  
Acid Soils ◽  
Cost Effective ◽  
Al Toxicity ◽  
Current Status ◽  
Root Tips ◽  
Acidic Soils

Aluminum (Al) toxicity is one of the major limitations that inhibit plant growth and development in acidic soils. In acidic soils (pH < 5.0), phototoxic-aluminum (Al3+) rapidly inhibits root growth, and subsequently affects water and nutrient uptake in plants. This review updates the existing knowledge concerning the role of mineral nutrition for alleviating Al toxicity in plants to acid soils. Here, we explored phosphorus (P) is more beneficial in plants under P-deficient, and Al toxic conditions. Exogenous P addition increased root respiration, plant growth, chlorophyll content, and dry matter yield. Calcium (Ca) amendment (liming) is effective for correcting soil acidity, and for alleviating Al toxicity. Magnesium (Mg) is able to prevent Al migration through the cytosolic plasma membrane in root tips. Sulfur (S) is recognized as a versatile element that alleviates several metals toxicity including Al. Moreover, silicon (Si), and other components such as industrial byproducts, hormones, organic acids, polyamines, biofertilizers, and biochars played promising roles for mitigating Al toxicity in plants. Furthermore, this review provides a comprehensive understanding of several new methods and low-cost effective strategies relevant to the exogenous application of mineral nutrition on Al toxicity mitigation. This information would be effective for further improvement of crop plants in acid soils.

The zinc finger transcription factor ATF1 regulates aluminum tolerance in barley

2020 ◽  
Vol 71 (20) ◽  
pp. 6512-6523
Author(s):  
Liyuan Wu ◽  
Yiyi Guo ◽  
Shengguan Cai ◽  
Liuhui Kuang ◽  
Qiufang Shen ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcriptional Activation ◽  
Crop Production ◽  
Molecular Mechanisms ◽  
Aluminum Tolerance ◽  
Acid Soils ◽  
Al Tolerance ◽  
Al Stress ◽  
Transcription Factor 1 ◽  
Differently Expressed Genes

Abstract Aluminum (Al) toxicity is a major abiotic stress that restricts crop production in acid soils. Plants have evolved internal and external mechanisms of tolerance, and among them it is well known that AtSTOP1 and OsART1 are key transcription factors involved in tolerance through regulation of multiple downstream genes. Here, we identified the closest homolog of these two proteins in barley, namely HvATF1, Al-tolerance Transcription Factor 1, and determined its potential function in Al stress. HvATF1 is expressed in the nucleus, and functions in transcriptional activation. The transcription of HvATF1 was found to be constitutive in different tissues, and was little affected by Al stress. Knockdown of HvATF1 by RNAi resulted in increased Al sensitivity. Transcriptomics analysis identified 64 differently expressed genes in the RNAi lines compared to the wild-type, and these were considered as candidate downstream genes regulated by HvATF1. This study provides insights into the different molecular mechanisms of Al tolerance in barley and other plants.

scholarly journals Genome Wide Association Mapping of Root Traits in the Andean Genepool of Common Bean (Phaseolus vulgaris L.) Grown With and Without Aluminum Toxicity

2021 ◽  
Vol 12 ◽  
Author(s):  
Daniel Ambachew ◽  
Matthew W. Blair
Keyword(s):  
Common Bean ◽  
Candidate Genes ◽  
Aluminum Toxicity ◽  
Root Traits ◽  
Al Toxicity ◽  
Genome Wide Association ◽  
Soil Conditions ◽  
Polygenic Inheritance ◽  
Genome Wide ◽  
Significant Difference

Common bean is one of the most important grain legumes for human diets but is produced on marginal lands with unfavorable soil conditions; among which Aluminum (Al) toxicity is a serious and widespread problem. Under low pH, stable forms of Al dissolve into the soil solution and as phytotoxic ions inhibit the growth and function of roots through injury to the root apex. This results in a smaller root system that detrimentally effects yield. The goal of this study was to evaluate 227 genotypes from an Andean diversity panel (ADP) of common bean and determine the level of Al toxicity tolerance and candidate genes for this abiotic stress tolerance through root trait analysis and marker association studies. Plants were grown as seedlings in hydroponic tanks at a pH of 4.5 with a treatment of high Al concentration (50 μM) compared to a control (0 μM). The roots were harvested and scanned to determine average root diameter, root volume, root surface area, number of root links, number of root tips, and total root length. Percent reduction or increase was calculated for each trait by comparing treatments. Genome wide association study (GWAS) was conducted by testing phenotypic data against single nucleotide polymorphism (SNP) marker genotyping data for the panel. Principal components and a kinship matrix were included in the mixed linear model to correct for population structure. Analyses of variance indicated the presence of significant difference between genotypes. The heritability of traits ranged from 0.67 to 0.92 in Al-treated and reached similar values in non-treated plants. GWAS revealed significant associations between root traits and genetic markers on chromosomes Pv01, Pv04, Pv05, Pv06, and Pv11 with some SNPs contributing to more than one trait. Candidate genes near these loci were analyzed to explain the detected association and included an Al activated malate transporter gene and a multidrug and toxic compound extrusion gene. This study showed that polygenic inheritance was critical to aluminum toxicity tolerance in common beans roots. Candidate genes found suggested that exudation of malate and citrate as organic acids would be important for Al tolerance. Possible cross-talk between mechanisms of aluminum tolerance and resistance to other abiotic stresses are discussed.

scholarly journals Deep expression scrutiny of juxtaposed wild and cultivated lentil furnishes new insight into aluminium tolerance mechanism

2020 ◽  
Author(s):  
Dharmendra Singh ◽  
Chandan Kumar Singh ◽  
Jyoti Taunk ◽  
Ram Sewak Singh Tomar ◽  
Madan Pal ◽  
...  
Keyword(s):  
Pathway Analysis ◽  
De Novo ◽  
Crop Improvement ◽  
Al Toxicity ◽  
Aluminium Tolerance ◽  
Regulation Of Transcription ◽  
Al Tolerance ◽  
Illumina Hiseq ◽  
Al Stress ◽  
Protein Ubiquitination

Abstract Background: Aluminium (Al) stress hinders crop productivity in acidic soils. Lentil contains rich source of protein and micronutrients and cultivated in different parts of world. To enhance knowledge about Al toxicity tolerance, present study emphasizes on mechanistic analysis of genes associated with Al stress through de novo transcriptomic analysis of tolerant (L-4602), wild (ILWL-15) and sensitive (BM-4) genotypes. Result: Illumina HiSeq 2500 platform evaluated contigs ranging from 15,305 to 18,861 for all the samples with N 50 values of 1795 bp. Four annotation softwares revealed differential regulation of several genes where 30,158 genes were specifically up-regulated for combinations under Al stress conditions alone. Top up-regulated Differentially Expressed Genes (DEGs) in tolerant cultivar when compared to the sensitive one were found to be involved in protein transport as well as degradation, defences, cell growth and development. Wild v/s cultivar comparison revealed upregulation of wild DEGs that are involved in regulation of transcription in differentiating cells, pre-mRNA splicing, catalysis and protein ubiquitination. Based on assembled Unigenes, 89,722 high-quality SNPs and 39,874 SSRs were detected. Twelve selected genes were validated using qRT-PCR. KEGG pathway analysis extracted 8,757 GO annotation terms within molecular, cellular and biological processes. Pathway analysis indicated that organic acid synthesis and their transportation along with detoxification of ROS, an alternate pathway involving metacaspase-1,4,9 for programmed cell death were also significantly induced due to Al stress. Conclusion: Present study unveils the characterization of differential transcripts generated under Al stress indicating Al tolerance as a multiplex phenomenon which will directly widen crop improvement programmes for Al toxicity utilizing molecular approaches.

Recent molecular breeding advances for improving aluminium tolerance in maize and sorghum.

2021 ◽  
pp. 318-324
Author(s):  
Claudia Teixeira Guimaraes ◽  
Jurandir Vieira de Magalhaes
Keyword(s):  
Target Genes ◽  
Acid Soils ◽  
Genetic Effect ◽  
Al Toxicity ◽  
Aluminium Tolerance ◽  
Al Tolerance ◽  
Toxic Compound ◽  
The World ◽  
Breeding Programmes ◽  
Wide Adaptation

Abstract Citrate transporters belonging to the multidrug and toxic compound extrusion (MATE) family of membrane transporters in sorghum and maize, SbMATE and ZmMATE1, respectively, play a major role in aluminium (Al) tolerance. However, these MATE members show regulatory differences, as well as peculiarities in their genetic effect and mode of action. These aspects, which are discussed in this chapter, have to be considered to design successful breeding programmes in order to achieve maximum Al tolerance and, consequently, to improve grain and biomass production in regions of the world with Al toxicity. As shown in this chapter, target genes with major effects and molecular tools are available for marker-assisted breeding for improving Al tolerance both in sorghum and maize. However, wide adaptation to acid soils should be sought by pyramiding genes controlling different traits such as drought tolerance, P acquisition, resistance to diseases and other stresses commonly found in each agroecological environment.

scholarly journals Timing, location and crop species influence the magnitude of amelioration of aluminum toxicity by magnesium

2009 ◽  
Vol 33 (1) ◽  
pp. 65-76 ◽  
Author(s):  
Ivo Ribeiro Silva ◽  
Tarcísio Fernando Cortes Corrêa ◽  
Roberto Ferreira Novais ◽  
T. Jot Smyth ◽  
Thomas Rufty ◽  
...  
Keyword(s):  
Root Growth ◽  
Protective Effect ◽  
Root System ◽  
Aluminum Toxicity ◽  
Protective Action ◽  
Al Toxicity ◽  
Al Tolerance ◽  
Crop Species ◽  
Soybean Cultivars ◽  
Split Root System

The protective effect of cations, especially Ca and Mg, against aluminum (Al) rhizotoxicity has been extensively investigated in the last decades. The mechanisms by which the process occurs are however only beginning to be elucidated. Six experiments were carried out here to characterize the protective effect of Mg application in relation to timing, location and crop specificity: Experiment 1 - Protective effect of Mg compared to Ca; Experiment 2 - Protective effect of Mg on distinct root classes of 15 soybean genotypes; Experiment 3 - Effect of timing of Mg supply on the response of soybean cvs. to Al; Experiment 4 - Investigating whether the Mg protective effect is apoplastic or simplastic using a split-root system; Experiment 5 - Protective effect of Mg supplied in solution or foliar spraying, and Experiment 6 - Protective effect of Mg on Al rhizotoxicity in other crops. It was found that the addition of 50 mmol L-1 Mg to solutions containing toxic Al increased Al tolerance in 15 soybean cultivars. This caused soybean cultivars known as Al-sensitive to behave as if they were tolerant. The protective action of Mg seems to require constant Mg supply in the external medium. Supplying Mg up to 6 h after root exposition to Al was sufficient to maintain normal soybean root growth, but root growth was not recovered by Mg addition 12 h after Al treatments. Mg application to half of the root system not exposed to Al was not sufficient to prevent Al toxicity on the other half exposed to Al without Mg in rooting medium, indicating the existence of an external protection mechanism of Mg. Foliar spraying with Mg also failed to decrease Al toxicity, indicating a possible apoplastic role of Mg. The protective effect of Mg appeared to be soybean-specific since Mg supply did not substantially improve root elongation in sorghum, wheat, corn, cotton, rice, or snap bean when grown in the presence of toxic Al concentrations.

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