scholarly journals Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter

Nanomaterials ◽  
2020 ◽  
Vol 10 (2) ◽  
pp. 240 ◽  
Author(s):  
Laurent Marichal ◽  
Géraldine Klein ◽  
Jean Armengaud ◽  
Yves Boulard ◽  
Stéphane Chédin ◽  
...  
Keyword(s):  
Silica Nanoparticles ◽  
Electrostatic Interactions ◽  
Large Scale ◽  
Driving Forces ◽  
Protein Corona ◽  
Sequence Length ◽  
Label Free ◽  
Curvature Effects ◽  
Proteomic Approach ◽  
Adsorbed Proteins

Biomolecules, and particularly proteins, bind on nanoparticle (NP) surfaces to form the so-called protein corona. It is accepted that the corona drives the biological distribution and toxicity of NPs. Here, the corona composition and structure were studied using silica nanoparticles (SiNPs) of different sizes interacting with soluble yeast protein extracts. Adsorption isotherms showed that the amount of adsorbed proteins varied greatly upon NP size with large NPs having more adsorbed proteins per surface unit. The protein corona composition was studied using a large-scale label-free proteomic approach, combined with statistical and regression analyses. Most of the proteins adsorbed on the NPs were the same, regardless of the size of the NPs. To go beyond, the protein physicochemical parameters relevant for the adsorption were studied: electrostatic interactions and disordered regions are the main driving forces for the adsorption on SiNPs but polypeptide sequence length seems to be an important factor as well. This article demonstrates that curvature effects exhibited using model proteins are not determining factors for the corona composition on SiNPs, when dealing with complex biological media.

scholarly journals Land Use Transition and Driving Forces in Chinese Loess Plateau: A Case Study from Pu County, Shanxi Province

Land ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 67
Author(s):  
Han Huang ◽  
Yang Zhou ◽  
Mingjie Qian ◽  
Zhaoqi Zeng
Keyword(s):  
Land Use ◽  
Food Security ◽  
Loess Plateau ◽  
Large Scale ◽  
Driving Forces ◽  
Chinese Loess Plateau ◽  
Shanxi Province ◽  
Forest Land ◽  
Land Use Transition ◽  
Macro Scale

Land use transition is essentially one of the manifestations of land use/cover change (LUCC). Although a large number of studies have focused on land use transitions on the macro scale, there are few studies on the micro scale. Based on the data of two high-resolution land use surveys, this study used a land use transfer matrix and GeoDetector model to explore the spatial-temporal patterns and driving forces of land use transitions at the village level in Pu County over a ten-year period. Results show that Pu County has experienced a drastic process of land use transition. More than 80% of cropland and grassland have been converted to forest land, and over 90% of the expansion of built-up land came from the occupation of forest land, cropland, and grassland. The driving forces of land use transition and its magnitude depended on the type of land use. The implementation of the policy of returning farmland to forest, or grain-for-green (GFG) was the main driving force for the large-scale conversion of cultivated land to forest land in Pu County. In the context of policy of returning farmland to forests, the hilly and gully regions of China’s Loess Plateau must balance between protecting the ecology and ensuring food security. Promoting the comprehensive consolidation of gully land and developing modern agriculture may be an important way to achieve a win-win goal of ecological protection and food security.

scholarly journals Label-free fluorescence predictions from large-scale correlative light and electron microscopy data

2021 ◽  
Vol 27 (S1) ◽  
pp. 94-95
Author(s):  
Ryan Lane ◽  
Luuk Balkenende ◽  
Simon van Staalduine ◽  
Anouk Wolters ◽  
Ben Giepmans ◽  
...  
Keyword(s):  
Electron Microscopy ◽  
Large Scale ◽  
Light And Electron Microscopy ◽  
Label Free ◽  
Electron Microscopy Data ◽  
Microscopy Data

scholarly journals Fabrication of Ultrathin MoS2 Nanosheets and Application on Adsorption of Organic Pollutants and Heavy Metals

Processes ◽  
2020 ◽  
Vol 8 (5) ◽  
pp. 504 ◽  
Author(s):  
Siyi Huang ◽  
Ziyun You ◽  
Yanting Jiang ◽  
Fuxiang Zhang ◽  
Kaiyang Liu ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Electrostatic Interactions ◽  
Large Scale ◽  
Layer Structure ◽  
Structural Characteristics ◽  
Hexagonal Phase ◽  
Two Dimensional ◽  
Mos2 Nanosheets ◽  
Hybrid Strategy ◽  
Ultrathin Mos2 Nanosheets

Owing to their peculiar structural characteristics and potential applications in various fields, the ultrathin MoS2 nanosheets, a typical two-dimensional material, have attracted numerous attentions. In this paper, a hybrid strategy with combination of quenching process and liquid-based exfoliation was employed to fabricate the ultrathin MoS2 nanosheets (MoS2 NS). The obtained MoS2 NS still maintained hexagonal phase (2H-MoS2) and exhibited evident thin layer-structure (1–2 layers) with inconspicuous wrinkle. Besides, the MoS2 NS dispersion showed excellent stability (over 60 days) and high concentration (0.65 ± 0.04 mg mL−1). The MoS2 NS dispersion also displayed evident optical properties, with two characteristic peaks at 615 and 670 nm, and could be quantitatively analyzed with the absorbance at 615 nm in the range of 0.01–0.5 mg mL−1. The adsorption experiments showed that the as-prepared MoS2 NS also exhibited remarkable adsorption performance on the dyes (344.8 and 123.5 mg g−1 of qm for methylene blue and methyl orange, respectively) and heavy metals (185.2, 169.5, and 70.4 mg g−1 of qm for Cd2+, Cu2+, and Ag+). During the adsorption, the main adsorption mechanisms involved the synergism of physical hole-filling effects and electrostatic interactions. This work provided an effective way for the large-scale fabrication of the two-dimensional nanosheets of transition metal dichalcogenides (TMDs) by liquid exfoliation.

scholarly journals Chromatin-Associated Proteins Revealed by SILAC-Proteomic Analysis Exhibit a High Likelihood of Requirement for Growth Fitness under DNA Damage Stress

2012 ◽  
Vol 2012 ◽  
pp. 1-12
Author(s):  
Han Wang ◽  
Pornpimol Tipthara ◽  
Lei Zhu ◽  
Suk Yean Poon ◽  
Kai Tang ◽  
...  
Keyword(s):  
Dna Damage ◽  
Proteomic Analysis ◽  
Ribosomal Proteins ◽  
Cell Extract ◽  
Label Free ◽  
High Likelihood ◽  
Nonhistone Proteins ◽  
Quantitative Proteomic Analysis ◽  
Proteomic Approach ◽  
Associated Functions

Chromatin-associated nonhistone proteins (CHRAPs) are readily collected from the DNaseI digested crude chromatin preparation. In this study, we show that the absolute abundance-based label-free quantitative proteomic analysis fail to identify potential CHRAPs from the CHRAP-prep. This is because that the most-highly abundant cytoplasmic proteins such as ribosomal proteins are not effectively depleted in the CHRAP-prep. Ribosomal proteins remain the top-ranked abundant proteins in the CHRAP-prep. On the other hand, we show that relative abundance-based SILAC-mediated quantitative proteomic analysis is capable of discovering the potential CHRAPs in the CHRAP-prep when compared to the whole-cell-extract. Ribosomal proteins are depleted from the top SILAC ratio-ranked proteins. In contrast, nucleus-localized proteins or potential CHRAPs are enriched in the top SILAC-ranked proteins. Consistent with this, gene-ontology analysis indicates that CHRAP-associated functions such as transcription, regulation of chromatin structures, and DNA replication and repair are significantly overrepresented in the top SILAC-ranked proteins. Some of the novel CHRAPs are confirmed using the traditional method. Notably, phenotypic assessment reveals that the top SILAC-ranked proteins exhibit the high likelihood of requirement for growth fitness under DNA damage stress. Taken together, our results indicate that the SILAC-mediated proteomic approach is capable of determining CHRAPs without prior knowledge.

Experiments of Compressible Homogeneous and Isotropic Turbulence Interacting With Expansion Waves

2003 ◽  
Author(s):  
Savvas S. Xanthos ◽  
Yiannis Andreopoulos
Keyword(s):  
Mach Number ◽  
Shock Tube ◽  
Total Pressure ◽  
Large Scale ◽  
Isotropic Turbulence ◽  
Pressure Fluctuations ◽  
Incident Shock ◽  
Expansion Waves ◽  
Curvature Effects ◽  
Homogeneous And Isotropic Turbulence

The interaction of traveling expansion waves with grid-generated turbulence was investigated in a large-scale shock tube research facility. The incident shock and the induced flow behind it passed through a rectangular grid, which generated a nearly homogeneous and nearly isotropic turbulent flow. As the shock wave exited the open end of the shock tube, a system of expansion waves was generated which traveled upstream and interacted with the grid-generated turbulence; a type of interaction free from streamline curvature effects, which cause additional effects on turbulence. In this experiment, wall pressure, total pressure and velocity were measured indicating a clear reduction in fluctuations. The incoming flow at Mach number 0.46 was expanded to a flow with Mach number 0.77 by an applied mean shear of 100 s−1. Although the strength of the generated expansion waves was mild, the effect on damping fluctuations on turbulence was clear. A reduction of in the level of total pressure fluctuations by 20 per cent was detected in the present experiments.

Dynamic development of the protein corona on silica nanoparticles: composition and role in toxicity

Nanoscale ◽  
2013 ◽  
Vol 5 (14) ◽  
pp. 6372 ◽  
Author(s):  
Ninell P. Mortensen ◽  
Gregory B. Hurst ◽  
Wei Wang ◽  
Carmen M. Foster ◽  
Prakash D. Nallathamby ◽  
...  
Keyword(s):  
Silica Nanoparticles ◽  
Protein Corona ◽  
Dynamic Development

scholarly journals Development of A Flexible Cell Targeting System Based on Silica Nanoparticles

1998 ◽  
Vol 530 ◽  
Author(s):  
T. Schiimstel ◽  
H. Schirra ◽  
J. Gerwann ◽  
C. Lesniak ◽  
A. Kalaghi-Nafchi ◽  
...  
Keyword(s):  
Silica Nanoparticles ◽  
Electrostatic Interactions ◽  
Particle Concentration ◽  
Biological Function ◽  
Particle Surface ◽  
Cell Types ◽  
Silica Particles ◽  
Hydrodynamic Diameter ◽  
Reaction Conditions ◽  
Physiological Conditions

AbstractCommercially available and synthesized silica particles were fluorescently labeled with FITC and modified to get a wide variety of particle systems with defined size and surface charge. By a variation of reaction conditions particles with diameters of 10 and 80 nm determined with TEM and with zetapotentials between -50 to +30 mV under physiological conditions (pH: 7.4, PBS-buffer) were available.A further molecular shell consisiting of avidin was obtained by binding the molecules to negatively charged particle surfaces through electrostatic interactions. The amount of avidin coupled to the silica particles was 1.7 μg per mg particle. Starting with particles with an hydrodynamic diameter determined with PCS of 260 nm, the size increased to 500 nm, while the zeta potential was altered to -8 mV under physiological conditions.Biotinylated wheat germ agglutinin (bio-WGA) can be bonded to such particles through avidin / biotin complex formation. Up to 2.8 μg lectin per mg particles could be coupled to the particle surface. This leads to a further increase of hydrodynamic diameter to 650 nm. It could be shown by hemagglutination test, that the bonded lectin is still active. No toxic effects of the silica particles were found at 1 wt.-% particle concentration with various cell types (Caco-2, L132). The binding of lectin-particle complexes to cells was increased by a factor of 4.4 in comparison to uncoated particles.In addition it was found that WGA can directly be coupled to the particle surface. An amount of 1.8 μg Lectin per mg particle was determined. The hydrodynamic diameter increases from 260 nm to 432 rm, while a zetapotential of-28 mV was found under physiological conditions.It could be shown, that negatively charged silica nanoparticles are suitable systems to couple various biomolecules retaining their biological function.

scholarly journals Widespread multi-targeted therapy resistance via drug-induced secretome fucosylation

2021 ◽  
Author(s):  
Mark Borris D. Aldonza ◽  
Junghwa Cha ◽  
Insung Yong ◽  
Jayoung Ku ◽  
Dabin Lee ◽  
...  
Keyword(s):  
Targeted Therapies ◽  
Large Scale ◽  
Kinase Inhibitors ◽  
Tumor Regression ◽  
Therapy Resistance ◽  
Critical Component ◽  
Label Free ◽  
Drug Induced ◽  
Pan Cancer ◽  
Core Fucosylation

AbstractCancer secretome is a reservoir for aberrant glycosylation. How therapies alter this post-translational cancer hallmark and the consequences thereof remain elusive. Here we show that an elevated secretome fucosylation is a pan-cancer signature of both response and resistance to multiple targeted therapies. Large-scale pharmacogenomics revealed that fucosylation genes display widespread association with resistance to these therapies. In both cancer cell cultures and patients, targeted kinase inhibitors distinctively induced core fucosylation of secreted proteins less than 60 kDa. Label-free proteomics of N-glycoproteomes revealed that fucosylation of the antioxidant PON1 is a critical component of the therapy-induced secretome. Core fucosylation in the Golgi impacts PON1 stability and folding prior to secretion, promoting a more degradation-resistant PON1. Non-specific and PON1-specific secretome de-N-glycosylation both limited the expansion of resistant clones in a tumor regression model. Our findings demonstrate that core fucosylation is a common modification indirectly induced by targeted therapies that paradoxically promotes resistance.

scholarly journals Synovial Fluid Profile Dictates Nanopracticle Uptake into Cartilage- Implications of the Protein Corona for Novel Arthitis Treatments

2021 ◽  
Author(s):  
Ula von Mentzer ◽  
Tilia Selldén ◽  
LOISE Råberg ◽  
Gizem Erensoy ◽  
Anna-Karin Hultgård-Ekwall ◽  
...  
Keyword(s):  
Rheumatoid Arthritis ◽  
Drug Delivery ◽  
Synovial Fluid ◽  
Electrostatic Interactions ◽  
Fetal Calf Serum ◽  
Biological Fluids ◽  
Calf Serum ◽  
Protein Corona ◽  
Drug Delivery Vehicles ◽  
Drug Concentrations

<div>Intra-articular drug delivery strategies aiming to deliver drugs in diseases affected by cartilage-related issues are using electrostatic interactions to penetrate the dense cartilage matrix. This enables delivery of sufficient drug concentrations to the chondrocytes to mediate the desired therapeutic effect. As it is well known that size and charge of nanoparticles affects its interactions with the surrounding biological fluids, where proteins adsorb to the NP surface, resulting in a protein corona. There are, however, no studies investigating how the formed protein coronas affect cartilage uptake and subsequent cellular uptake, nor how they affect other cells present in the synovium of such diseases. Here, we explore the differences between the protein coronas that form when NP are incubated in synovial fluid from osteoarthritic and rheumatoid arthritis patients and compare this to results obtained using fetal calf serum (FCS), as guide for researchers working on joint drug delivery. We demonstrate that the protein corona indeed affects the uptake into cartilage, where there are major differences between the model proteins in fetal calf serum, as compared to synovial fluid from rheumatoid arthritis patients as well as osteoarthritis patients. The data suggests that when developing drug delivery vehicles for joint diseases that leverages electrostatic interactions and size, the interactions with proteins in the biological milieu is highly relevant to consider.</div>

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