scholarly journals Prevalence of Hantaviruses Harbored by Murid Rodents in Northwestern Ukraine and Discovery of a Novel Puumala Virus Strain

Viruses ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 1640
Author(s):  
Evan P. Williams ◽  
Mariah K. Taylor ◽  
Iryna Demchyshyna ◽  
Igor Nebogatkin ◽  
Olena Nesterova ◽  
...  
Keyword(s):  
Small Mammals ◽  
Phylogenetic Analyses ◽  
Hemorrhagic Fever ◽  
Immunofluorescence Assay ◽  
Myodes Glareolus ◽  
Small Rodent ◽  
Molecular Surveillance ◽  
Murid Rodents ◽  
Sorex Minutus ◽  
Rodent Populations

In Europe, two species of hantaviruses, Puumala orthohantavirus (PUUV) and Dobrava orthohantavirus (DOBV), cause hemorrhagic fever with renal syndrome in humans. The rodent reservoirs for these viruses are common throughout Ukraine, and hence, the goal of this study was to identify the species and strains of hantaviruses circulating in this region. We conducted surveillance of small rodent populations in a rural region in northwestern Ukraine approximately 30 km from Poland. From the 424 small mammals captured, we identified nine species, of which the most abundant were Myodes glareolus, the bank vole (45%); Apodemus flavicollis, the yellow-necked mouse (29%); and Apodemus agrarius, the striped field mouse (14.6%) Using an indirect immunofluorescence assay, 15.7%, 20.5%, and 33.9% of the sera from M. glareolus, A. glareolus, and A. flavicollis were positive for hantaviral antibodies, respectively. Additionally, we detected antibodies to the hantaviral antigen in one Microtus arvalis, one Mus musculus, and one Sorex minutus. We screened the lung tissue for hantaviral RNA using next-generation sequencing and identified PUUV sequences in 25 small mammals, including 23 M. glareolus, 1 M. musculus, and 1 A. flavicollis, but we were unable to detect DOBV sequences in any of our A. agrarius specimens. The percent identity matrix and Bayesian phylogenetic analyses of the S-segment of PUUV from 14 M. glareolus lungs suggest the highest similarity (92–95% nucleotide or 99–100% amino acid) with the Latvian lineage. This new genetic information will contribute to future molecular surveillance of human cases in Ukraine.

scholarly journals Puumala Virus Variants Circulating in Forests of Ardennes, France: Ten Years of Genetic Evolution

Pathogens ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1164
Author(s):  
Guillaume Castel ◽  
Elodie Monchatre-Leroy ◽  
Marc López-Roig ◽  
Séverine Murri ◽  
Mathilde Couteaudier ◽  
...  
Keyword(s):  
Bank Vole ◽  
Phylogenetic Analyses ◽  
Myodes Glareolus ◽  
Puumala Virus ◽  
Spatial And Temporal Variability ◽  
Population Parameters ◽  
Mild Form ◽  
Turn Over ◽  
Rodent Populations ◽  
Bank Vole Myodes Glareolus

In Europe, Puumala virus (PUUV) transmitted by the bank vole (Myodes glareolus) is the causative agent of nephropathia epidemica (NE), a mild form of haemorrhagic fever with renal syndrome. In France, very little is known about the spatial and temporal variability of the virus circulating within bank vole populations. The present study involved monitoring of bank vole population dynamics and PUUV microdiversity over a ten-year period (2000–2009) in two forests of the Ardennes region: Elan and Croix-Scaille. Ardennes region is characterised by different environmental conditions associated with different NE epidemiology. Bank vole density and population parameters were estimated using the capture/marking/recapture method, and blood samples were collected to monitor the overall seroprevalence of PUUV in rodent populations. Phylogenetic analyses of fifty-five sequences were performed to illustrate the genetic diversity of PUUV variants between forests. The pattern of the two forests differed clearly. In the Elan forest, the rodent survival was higher, and this limited turn-over resulted in a lower seroprevalence and diversity of PUUV sequences than in the Croix-Scaille forest. Uncovering the links between host dynamics and virus microevolution is improving our understanding of PUUV distribution in rodents and the NE risk.

scholarly journals Serologic and molecular evidence for circulation of Crimean-Congo hemorrhagic fever virus in ticks and cattle in Zambia

2021 ◽  
Vol 15 (6) ◽  
pp. e0009452
Author(s):  
Masahiro Kajihara ◽  
Martin Simuunza ◽  
Ngonda Saasa ◽  
George Dautu ◽  
Akina Mori-Kajihara ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Case Fatality ◽  
Hemorrhagic Fever ◽  
Epidemiologic Studies ◽  
Immunofluorescence Assay ◽  
Molecular Evidence ◽  
African Countries ◽  
Crimean Congo Hemorrhagic Fever ◽  
Hemorrhagic Fever Virus ◽  
Cchf Virus

Crimean-Congo hemorrhagic fever (CCHF) is a tick-borne zoonosis with a high case fatality rate in humans. Although the disease is widely found in Africa, Europe, and Asia, the distribution and genetic diversity of CCHF virus (CCHFV) are poorly understood in African countries. To assess the risks of CCHF in Zambia, where CCHF has never been reported, epidemiologic studies in cattle and ticks were conducted. Through an indirect immunofluorescence assay, CCHFV nucleoprotein-specific serum IgG was detected in 8.4% (88/1,047) of cattle. Among 290 Hyalomma ticks, the principal vector of CCHFV, the viral genome was detected in 11 ticks. Phylogenetic analyses of the CCHFV S and M genome segments revealed that one of the detected viruses was a genetic reassortant between African and Asian strains. This study provides compelling evidence for the presence of CCHFV in Zambia and its transmission to vertebrate hosts.

scholarly journals Population cycles and outbreaks of small rodents: ten essential questions we still need to solve

Oecologia ◽  
2020 ◽  
Author(s):  
Harry P. Andreassen ◽  
Janne Sundell ◽  
Fraucke Ecke ◽  
Stefan Halle ◽  
Marko Haapakoski ◽  
...  
Keyword(s):  
Population Dynamics ◽  
Large Amplitude ◽  
Driving Forces ◽  
Population Cycles ◽  
Small Rodent ◽  
Small Rodents ◽  
Rodent Population ◽  
The World ◽  
Essential Questions ◽  
Rodent Populations

AbstractMost small rodent populations in the world have fascinating population dynamics. In the northern hemisphere, voles and lemmings tend to show population cycles with regular fluctuations in numbers. In the southern hemisphere, small rodents tend to have large amplitude outbreaks with less regular intervals. In the light of vast research and debate over almost a century, we here discuss the driving forces of these different rodent population dynamics. We highlight ten questions directly related to the various characteristics of relevant populations and ecosystems that still need to be answered. This overview is not intended as a complete list of questions but rather focuses on the most important issues that are essential for understanding the generality of small rodent population dynamics.

Small mammal mycophagy in hemiboreal forest communities of Lithuania

2011 ◽  
Vol 6 (3) ◽  
pp. 446-456 ◽  
Author(s):  
Marija Kataržytė ◽  
Ernestas Kutorga
Keyword(s):  
Small Mammals ◽  
Small Mammal ◽  
Fungal Spores ◽  
Seasonal Effects ◽  
Deciduous Tree ◽  
Myodes Glareolus ◽  
Mammal Species ◽  
Hypogeous Fungi ◽  
Fecal Samples ◽  
Significant Difference

AbstractThe diets of small mammals in different hemiboreal spruce-dominated, oak-dominated and mixed forests in western part of Lithuania were studied by examination of fungal spores in fresh fecal pellets of caught animals. In the diets of mice (Apodemus spp.), bank voles (Myodes glareolus), and common and pygmy shrews (Sorex araneus and S. minutus), 22 different fungal taxa were identified, 15 of which were hypogeous fungi. The sporocarp abundance and the spores in fecal samples of Elaphomyces fungi prevailed in study area during this investigation. Although most of the captured individuals consumed fungi, the consumption varied among small mammal species. The data show that the fungi were more frequent and taxonomically diverse in Myodes glareolus than in Apodemus spp. diets. The study provided evidence that the fungal component in the diets of insectivorous Sorex species is more diverse than previously known. The availability of sporocarps and the fungal component in the diets of small mammals showed seasonal effects. Annual hypogeous and epigeous sporocarp abundances did not vary significantly across forest types. The significant difference in mycophagy was observed across all forest cover types, with the greatest fungal diversity in fecal samples collected in mixed coniferous-deciduous tree stands.

scholarly journals Small-mammal assemblages inhabiting Sphagnum peat bogs in various regions of Poland

2012 ◽  
Vol 49 (2) ◽  
pp. 115-133
Author(s):  
Mateusz Ciechanowski ◽  
Jan Cichocki ◽  
Agnieszka Ważna ◽  
Barbara Piłacińska
Keyword(s):  
Small Mammal ◽  
Western Europe ◽  
Habitat Degradation ◽  
Myodes Glareolus ◽  
Peat Bogs ◽  
Trophic Conditions ◽  
Characteristic Features ◽  
Mammal Assemblages ◽  
Sorex Minutus ◽  
Pygmy Shrew

Abstract We studied species composition of assemblages of small mammals (rodents and shrews) inhabiting Polish 25 ombrotrophic mires and quaking bogs in several regions in order to reveal characteristic features of their quantitative structure and compare them between regions, internal zones of the bog habitats, and different levels of anthropogenic degradation. We reviewed also all published results of small-mammal trapping in such habitats. Mammals were captured in pitfalls, snap traps and live traps on 12 bogs of the Pomerania region, 4 bogs of the Orawa-Nowy Targ Basin (Kotlina Orawsko-Nowotarska), 3 bogs in the Świętokrzyskie Mts, and 6 bogs in Wielkopolska and the Lubusz Land. Additionally, we included materials collected from Barber traps (pitfalls) used during studies of epigeic invertebrates on 4 bogs. In total, 598 individuals of 12 species were collected. The number of pitfall captures per 100 trapnights was very low (7.0-7.8), suggesting low population density. Shrews predominated among mammals captured in pitfalls, and the assemblage structure appeared to be similar to impoverished forest fauna, slightly enriched with ubiquitous species from meadows and agroecosystems, with a very small percentage of typical wetland species (Neomys fodiens, Neomys anomalus, Microtus oeconomus). Rodents (mostly Myodes glareolus) predominated only in samples obtained by live and snap traps. Pygmy shrew Sorex minutus was the most numerous species at most sites, sometimes being the only small mammal in that habitat, especially in well-preserved, treeless parts of bogs, dominated by Sphagnum peatmoss. The dominance and high constancy of S. minutus appear to be a characteristic feature of small-mammal assemblages inhabiting ombrotrophic mires, at least in some regions of Central and Western Europe. Enrichment of the fauna with other species might be related to either improved trophic conditions (by contact with mineralized ground waters) or habitat degradation (by peat mining, drainage, and subsequent secondary succession).

scholarly journals A novel genotype of Hantaan orthohantavirus harbored by Apodemus agrarius chejuensis as a potential etiologic agent of hemorrhagic fever with renal syndrome in Republic of Korea

2021 ◽  
Vol 15 (5) ◽  
pp. e0009400
Author(s):  
Kyungmin Park ◽  
Won-Keun Kim ◽  
Seung-Ho Lee ◽  
Jongwoo Kim ◽  
Jingyeong Lee ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Hemorrhagic Fever ◽  
Etiologic Agent ◽  
Jeju Island ◽  
Etiological Agent ◽  
Republic Of Korea ◽  
Hantaan Virus ◽  
Genomic Sequences ◽  
Mortality And Morbidity ◽  
Apodemus Agrarius

Background Orthohantaviruses, causing hemorrhagic fever with renal syndrome (HFRS) and hantavirus cardiopulmonary syndrome, pose a significant public health threat worldwide. Despite the significant mortality and morbidity, effective antiviral therapeutics or vaccines for orthohantavirus infections are currently unavailable. This study aimed to investigate the prevalence of HFRS-associated orthohantaviruses and identify the etiological agent of orthohantavirus outbreaks in southern Republic of Korea (ROK). Methodology/Principal findings We collected small mammals on Jeju Island during 2018–2020. We detected the Hantaan virus (HTNV)-specific antibodies and RNA using an indirect immunofluorescence assay test and reverse transcription-polymerase chain reaction on Apodemus agrarius chejuensis (A. chejuensis). The prevalence of anti-HTNV antibodies among rodents was 14.1%. A total of six seropositive mice harbored HTNV RNA. The amplicon-based next-generation sequencing provided nearly full-length tripartite genomic sequences of six HTNV harbored by A. chejuensis. Phylogenetic and tanglegram analyses were conducted for inferring evolutionary relationships between orthohantaviruses with their reservoir hosts. Phylogenetic analyses identified a novel distinct HTNV genotype. The detected HTNV genomic sequences were phylogenetically related to a viral sequence derived from HFRS patient in southern ROK. Tanglegram analysis demonstrated the segregation of HTNV genotypes corresponding to Apodemus spp. divergence. Conclusions/Significance Our results suggest that A. chejuensis-borne HTNV may be a potential etiological agent of HFRS in southern ROK. Ancestral HTNV may infect A. chejuensis prior to geological isolation between the Korean peninsula and Jeju Island, supporting the co-evolution of orthohantaviruses and rodents. This study arises awareness among physicians for HFRS outbreaks in southern ROK.

scholarly journals The Distribution of Puumala orthohantavirus Genome Variants Correlates with the Regional Landscapes in the Trans-Kama Area of the Republic of Tatarstan

Pathogens ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 1169
Author(s):  
Yuriy N. Davidyuk ◽  
Emmanuel Kabwe ◽  
Anton F. Shamsutdinov ◽  
Anna V. Knyazeva ◽  
Ekaterina V. Martynova ◽  
...  
Keyword(s):  
Bank Vole ◽  
Phylogenetic Analyses ◽  
Genetic Material ◽  
Hemorrhagic Fever ◽  
Federal District ◽  
Genetic Lineage ◽  
Bank Voles ◽  
European Part Of Russia ◽  
The Republic ◽  
River Valleys

In the European part of Russia, the highest number of hemorrhagic fever with renal syndrome (HFRS) cases are registered in the Volga Federal District (VFD), which includes the Republic of Tatarstan (RT). Puumala orthohantavirus (PUUV) is the main causative agent of HFRS identified in the RT. The goal of the current study is to analyze the genetic variations of the PUUV strains and possible presence of chimeric and reassortant variants among the PUUV strains circulating in bank vole populations in the Trans-Kama area of the RT. Complete S segment CDS as well as partial M and L segment coding nucleotide sequences were obtained from 40 PUUV-positive bank voles and used for the analysis. We found that all PUUV strains belonged to RUS genetic lineage and clustered in two subclades corresponding to the Western and Eastern Trans-Kama geographic areas. PUUV strains from Western Trans-Kama were related to the previously identified strain from Teteevo in the Pre-Kama area. It can be suggested that the PUUV strains were introduced to the Teteevo area as a result of the bank voles’ migration from Western Trans-Kama. It also appears that physical obstacles, including rivers, could be overcome by migrating rodents under favorable circumstances. Based on results of the comparative and phylogenetic analyses, we propose that bank vole distribution in the Trans-Kama area occurred upstream along the river valleys, and that watersheds could act as barriers for migrations. As a result, the diverged PUUV strains could be formed in closely located populations. In times of extensive bank vole population growth, happening every 3–4 years, some regions of watersheds may become open for contact between individual rodents from neighboring populations, leading to an exchange of the genetic material between divergent PUUV strains.

scholarly journals Small mammals of the Kaluga region – reservoirs of dangerous zoonotic diseases

2020 ◽  
pp. 291-294
Author(s):  
Nikanorova ◽  
Kozlov
Keyword(s):  
Small Mammals ◽  
Mus Musculus ◽  
Rattus Norvegicus ◽  
Zoonotic Diseases ◽  
Myodes Glareolus ◽  
Field Mouse ◽  
Vector Borne ◽  
Kaluga Region ◽  
The City ◽  
Small Forest

The article considers the issues of carriage by small mammals of dangerous zoonotic diseases: leptospirosis, tularemia, hantaviruses. Data on the detection of antigens to pathogens in the districts of the Kaluga region are presented. As you know, small mammals are the main link in maintaining zoonotic natural focal diseases. The larval phases of ixodic ticks, mosquitoes and other parasitic arthropods prefer to feed on the blood of mouse rodents, which contributes to the spread of vector-borne infections and infestations. The following species of mouse rodents are found in the Kaluga Region: small forest mouse (Apodemus uralensis), gray vole, red vole (Myodes glareolus), field mouse (Apodemus agrarius), gray rat (Rattus norvegicus), and house mouse (Mus musculus). In natural biotopes, field species prevail in number: field mouse, gray vole, red vole. In the Kaluga region, antigens for tularemia, hantaviruses, and leptospirosis were found in small mammals in 4.9–9.4% of the studied animals on average per year. Of particular concern are the city of Kaluga, Borovsky, Babyninsky, Yukhnovsky, Ulyanovsk, Medynsky, Maloyaroslavetsky, Meshchovsky, Peremyshlsky, Kozelsky, Dzerzhinsky and Ulyanovsk districts. The data obtained indicate the stationarity of these diseases in the territory of the Kaluga region.

scholarly journals Species composition of small mammals in key biotopes near Kolomak (Kharkiv Oblast)

2021 ◽  
Vol 2020 (20) ◽  
pp. 29-38
Author(s):  
Oksana Markovska ◽  
Keyword(s):  
Species Diversity ◽  
Species Composition ◽  
Small Mammals ◽  
Relative Abundance ◽  
Mus Musculus ◽  
Sorex Araneus ◽  
Myodes Glareolus ◽  
Oak Forest ◽  
Apodemus Agrarius ◽  
Micromys Minutus

The study of the species composition and biotope preferences of small mammals around Kolomak had been carried out for four years (2017–2020). During the study period, 9 species of mouse-like rodents and 3 species of insectivores were found. No Cricetulus migratorius, Terricola subterraneus or Microtus oeconomus were found from the theoretically expected species already known for this area. Around Kolomak, 11 biotopes were investigated, including maple-linden oak forest, agrocenoses, dry and flooded meadows, which are located along the banks of a pond and in a gully-ravine system. The first year of research was in a year of high abundance (2017), and then 9 species were immediately discovered, but species with small abundance, such as Crocidura suaveolens, Sorex minutus, and Micromys minutus, were found in years with a small relative abundance of small mammals. Myodes glareolus, Sylvaemus tauricus and Sylvaemus uralensis are dominant species in the captures. According to the trapping results, 2017 was the year of high relative abundance of small mammals, 2018 was the year of the lowest relative abundance, 2019 and 2020 were years with an average relative abundance. During the study period, 6 species were identified in forest biotopes (Apodemus agrarius, Sylvaemus tauricus, Sylvaemus uralensis, Myodes glareolus, Sorex araneus, and Dryomys nitedula). In ecotones with floodplain biotopes, 8 species were found (Apodemus agrarius, Sylvaemus sylvaticus, Sylvaemus uralensis, Mus musculus, Micromys minutus, Myodes glareolus, and Sorex araneus). Four species (Mus musculus, Sylvaemus sylvaticus, Sylvaemus uralensis, and Microtus levis) were discovered near human settlements. In general, biotopes with the greatest species diversity and number of caught individuals are ecotones of dry and floodplain meadows. In years of high abundance, both species diversity and the number of individuals caught in the oak forest and in ecotones near the pond increased. It should be noted that Myodes glareolus was caught in clear-cuts during the two years (2019-2020) only in the summer of 2020. Earlier, not a single specimen of this species was caught there, although there is a dense weed grass cover in this area and the shrub layer has also grown up in some places, and the clear-cut is surrounded by oak forest.

scholarly journals Tick-Borne Encephalitis Virus: Seasonal and Annual Variation of Epidemiological Parameters Related to Nymph-to-Larva Transmission and Exposure of Small Mammals

Pathogens ◽  
2020 ◽  
Vol 9 (7) ◽  
pp. 518
Author(s):  
Laure Bournez ◽  
Gerald Umhang ◽  
Marie Moinet ◽  
Céline Richomme ◽  
Jean-Michel Demerson ◽  
...  
Keyword(s):  
Small Mammals ◽  
Temporal Variations ◽  
Encephalitis Virus ◽  
Myodes Glareolus ◽  
Mountain Forest ◽  
Annual Variations ◽  
Tick Borne Encephalitis ◽  
Tick Borne Encephalitis Virus ◽  
Over Time ◽  
Epidemiological Parameters

A greater knowledge of the ecology of the natural foci of tick-borne encephalitis virus (TBEV) is essential to better assess the temporal variations of the risk of tick-borne encephalitis for humans. To describe the seasonal and inter-annual variations of the TBEV-cycle and the epidemiological parameters related to TBEV nymph-to-larva transmission, exposure of small mammals to TBEV, and tick aggregation on small mammals, a longitudinal survey in ticks and small mammals was conducted over a 3-year period in a mountain forest in Alsace, eastern France. TBEV prevalence in questing nymphs was lower in 2013 than in 2012 and 2014, probably because small mammals (Myodes glareolus and Apodemus flavicollis) were more abundant in 2012, which reduced tick aggregation and co-feeding transmission between ticks. The prevalence of TBEV in questing nymphs was higher in autumn than spring. Despite these variations in prevalence, the density of infected questing nymphs was constant over time, leading to a constant risk for humans. The seroprevalence of small mammals was also constant over time, although the proportion of rodents infested with ticks varied between years and seasons. Our results draw attention to the importance of considering the complex relationship between small mammal densities, tick aggregation on small mammals, density of infected questing nymphs, and prevalence of infected nymphs in order to forecast the risk of TBEV for humans.

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