Identification of Species in the Aromatic Spice Family Apiaceae Using DNA Mini-barcodes

Planta Medica ◽  
2018 ◽  
Vol 85 (02) ◽  
pp. 139-144 ◽  
Author(s):  
Iffat Parveen ◽  
Natascha Techen ◽  
Ikhlas Khan
Keyword(s):  
Plant Species ◽  
Plant Material ◽  
Nuclear Genome ◽  
Single Species ◽  
Its2 Region ◽  
Diagnostic Pcr ◽  
Pcr Product ◽  
Similar Chemical ◽  
Plant Families ◽  
Species Specific

AbstractThe species of the aromatic plant family Apiaceae are mainly used as spices and foods, but the family also includes medicinal and some poisonous plant species. Due to the similar chemical compounds or aroma and morphology, the poisonous species are often mistaken for the edible aromatic species. It is therefore imperative to correctly identify the species present at the initial raw stage samples to ensure product safety and efficacy. At the molecular level, plant species can be identified using DNA loci either from nuclear or plastid genome with easily available universal oligonucleotides, a technique called DNA barcoding. However, this is possible when single-species plant material is present but may not work on a mixture of plants species. Another disadvantage is that using universal oligonucleotides is of limited help, especially if the adulterating material is present in low quantities. On the other hand, if using the species-specific oligonucleotides, only single specific adulterating plant material could be detected and, consequently, the unexpected adulterants may go undetected. Therefore, in the current work, four degenerated oligonucleotides from ITS1 and ITS2 regions of the nuclear genome were designed that can bind to a variety of Apiaceae genera only and not to other genera belonging to different plant families. These family-specific oligonucleotides were able to amplify a diagnostic PCR product from 16 Apiaceae species that, upon sequencing, revealed the identity of the plant it was derived from. The size of these products is around 140 bp for ITS1 and approximately 80 bp for the ITS2 region. The size range of the amplified products falls in the category of a desired mini-barcode size to be used for damaged/fragmented DNA and next generation sequencing.

scholarly journals Molecular differentiation of four Reptalus species (Hemiptera: Cixiidae)

2010 ◽  
Vol 100 (5) ◽  
pp. 551-558 ◽  
Author(s):  
S. Bertin ◽  
L. Picciau ◽  
Z. Ács ◽  
A. Alma ◽  
D. Bosco
Keyword(s):  
Control Strategies ◽  
Species Discrimination ◽  
Morphological Description ◽  
Its2 Region ◽  
Pcr Product ◽  
Pcr Rflp ◽  
Gene Coi ◽  
Phytoplasma Infection ◽  
Species Specific ◽  
Dna Pcr

AbstractThe cixiid species Reptalus quinquecostatus, R. cuspidatus, R. panzeri and R. melanochaetus are widely distributed in Europe and are receiving growing attention because of their potential role as phytoplasma vectors. Identifying the Reptalus species is restricted to a few specialist entomologists and relies on the morphology of the male genitalia, hampering the identification of juveniles and females. This study provides the tools for species discrimination by integrating the morphological description, which is primarily for the genus identification, with new molecular assays, based on both ribosomal and mitochondrial DNA. PCR-RFLP assays carried out on the mitochondrial cytochrome oxidase I gene (COI) with AluI provided species-specific profiles for the four Reptalus species. Amplification of a ribosomal internal transcribed spacer (ITS2) region produced species-specific fragments of different sizes for R. quinquecostatus, R. melanochaetus, R. cuspidatus and R. panzeri. The digestion of the ITS2 PCR product with TaqI allowed the discrimination of these latter two species. This molecular identification key ensures reliable results and can be successfully applied not only to adults, but also to the nymphs feeding on the roots. The identification of the nymphs (i) extends the collection period of these monovoltine species to the whole year (adults are present for a short summer period) and (ii) allows the unambiguous identification of their actual host plants because nymphs are steady on the root system while adults tend to disperse onto other plants. Fast and reliable identification of the Reptalus species provides useful help in monitoring activities and, therefore, in designing rational control strategies to protect crops from phytoplasma infection.

Pemanfaatan Tumbuhan Obat Tradisional oleh Etnis Sangihe di Kepulauan Sangihe Bagian Selatan, Sulawesi Utara (The Usage of Traditional Medicinal Plants by Sangihe Ethnic in the Southern Sangihe Islands, North Sulawesi)

2018 ◽  
Vol 8 (2) ◽  
pp. 45
Author(s):  
Chrisye Yustitia Pelokang ◽  
Roni Koneri ◽  
Deidy Katili
Keyword(s):  
Medicinal Plants ◽  
Traditional Medicine ◽  
Plant Species ◽  
Structured Interviews ◽  
Active Components ◽  
Plant Materials ◽  
Medical Practitioners ◽  
North Sulawesi ◽  
Traditional Medicinal Plants ◽  
Plant Families

Abstrak Tumbuhan obat merupakan tumbuhan yang menghasilkan satu atau lebih komponen aktif yang dipercaya oleh penduduk berkhasiat obat sehingga dimanfaatkan dalam pengobatan tradisional. Penelitian ini bertujuan untuk mengidentifikasi dan mengkaji spesies tumbuhan yang digunakan sebagai obat tradisional oleh Etnis Sangihe di Kepulauan Sangihe bagian Selatan, Sulawesi Utara. Pengambilan data dilakukan melalui wawancara terstruktur  yang diajukan kepada pengobat tradisional. Hasil penelitian menunjukkan adanya 38 spesies dari 25 famili tumbuhan yang dimanfaatkan sebagai tumbuhan obat oleh Etnis Sangihe bagian Selatan. Herba merupakan habitus tumbuhan yang banyak dimanfaatkan untuk bahan pengobatan. Bagian tumbuhan yang paling banyak digunakan sebagai obat yaitu daun. Cara pengolahan yang paling banyak digunakan adalah direbus. Jenis penyakit yang dapat diobati dengan tumbuhan obat sebanyak 22 jenis penyakit. Kata kunci: tumbuhan obat, obat tradisional, habitus, Kepulauan Sangihe Bagian Selatan Abstract             Medicinal plants are plants that produce one or more active components that are believed by local people as medicinal plants for traditional medicine practices. This study aimed to identify and to assess the plant species that used as traditional medicine by the Sangihe Ethnic in the Southern Sangihe Islands, North Sulawesi. Data collection was conducted by structured interviews to the indigenous medical practitioners. The results showed that 38 plant species from 25 plant families were used as medicinal plants by the Southern Sangihe Ethnic people. Herbs were plant habitus that were widely used for medicinal ingredients. The leaves were widely used as medicinal plant materials. Boiling was the most processing method for preparing medicinal herbs. There were 22 types of diseases that could be treated using medicinal plants. Keywords: medicinal plants, traditional medicine, habitus, Southern Sangihe Islands

scholarly journals Big hitting collectors make massive and disproportionate contribution to the discovery of plant species

2012 ◽  
Vol 279 (1736) ◽  
pp. 2269-2274 ◽  
Author(s):  
Daniel P. Bebber ◽  
Mark A. Carine ◽  
Gerrit Davidse ◽  
David J. Harris ◽  
Elspeth M. Haston ◽  
...  
Keyword(s):  
Plant Species ◽  
Biological Diversity ◽  
High Rate ◽  
Type Specimens ◽  
Fundamental Goal ◽  
The World ◽  
Plant Families ◽  
The Right ◽  
Geographical Locations

Discovering biological diversity is a fundamental goal—made urgent by the alarmingly high rate of extinction. We have compiled information from more than 100 000 type specimens to quantify the role of collectors in the discovery of plant diversity. Our results show that more than half of all type specimens were collected by less than 2 per cent of collectors. This highly skewed pattern has persisted through time. We demonstrate that a number of attributes are associated with prolific plant collectors: a long career with increasing productivity and experience in several countries and plant families. These results imply that funding a small number of expert plant collectors in the right geographical locations should be an important element in any effective strategy to find undiscovered plant species and complete the inventory of the world flora.

PRELIMINARY STUDIES RELATED TO MICROSCOPY AND THE SEDEM EXPERT SYSTEM PROFILE ON FREEZED-DRIED EXTRACT OF LYTHRI HERBA

2021 ◽  
Author(s):  
Valeriu Valeriu Iancu ◽  
Laura Adriana Bucur ◽  
Verginica Schröder ◽  
Manuela Rossemary Apetroaei
Keyword(s):  
Expert System ◽  
Plant Species ◽  
Plant Material ◽  
Lythrum Salicaria ◽  
Total Polyphenols ◽  
Spongy Mesophyll ◽  
Freeze Dried ◽  
Anomocytic Stomata ◽  
Dried Extract ◽  
Antibacterial And Antifungal

"The floral tips of the plant species Lythrum salicaria L. represent a rich source of total polyphenols, among which with the largest share we mention tannins, and this is why this plant material has a standardized monograph in the European Pharmacopoeia 10.0th edition. According to the literature accessed so far, the plant material has antioxidant, anti-inflammatory, hemostatic, antibacterial and antifungal properties, along with modulatory action on carbohydrate metabolism. Powder microscopic examination is an important step in establishing the identity of the plant species used, highlighting elements specific to the aerial part such as spiral vessels of the stem, fragments of the spongy mesophyll with calcium oxalate clusters cells and anomocytic stomata. The application of the SeDeM method on dried plant extracts represents an innovative trend in pharmaceutical technology and contributes to the collection of data in a structured and standardized form. In this paper, the functions and applications of the SeDeM expert system are illustrated upon the freeze-dried extract of Lythri herba for the purpose of easier identification and standardization. Future applications may include obtaining chewable gums or tablets by direct compression."

Quantitative Detection of Species-Specific DNA in Feedstuffs and Fish Meals

2005 ◽  
Vol 68 (6) ◽  
pp. 1217-1221 ◽  
Author(s):  
PAVEL KRCMAR ◽  
EVA RENCOVA
Keyword(s):  
Mitochondrial Dna ◽  
Real Time ◽  
Dna Sequences ◽  
Real Time Pcr ◽  
Single Species ◽  
Absolute Quantification ◽  
Quantitative Detection ◽  
Vertebrate Species ◽  
Target Species ◽  
Species Specific

A sensitive and rapid method for the quantitative detection of bovine-, ovine-, swine-, and chicken-specific mitochondrial DNA sequences based on real-time PCR has been developed. The specificity of the primers and probes for real-time PCR has been tested using DNA samples of other vertebrate species that may also be present in rendered products. The quantitative detection was performed with dual-labeled probes (TaqMan) using absolute quantification with external standards of single species meat-and-bone meals. This method facilitates the detection of 0.01% of the target species–derived material in concentrate feed mixtures and fish meals.

scholarly journals Sephadex® LH-20, Isolation, and Purification of Flavonoids from Plant Species: A Comprehensive Review

Molecules ◽  
2020 ◽  
Vol 25 (18) ◽  
pp. 4146
Author(s):  
Javad Mottaghipisheh ◽  
Marcello Iriti
Keyword(s):  
Phenolic Compounds ◽  
Secondary Metabolites ◽  
Plant Species ◽  
Health Benefits ◽  
Significant Information ◽  
Comprehensive Review ◽  
Isolation And Purification ◽  
Phytochemical Investigation ◽  
Plant Families ◽  
Pure Methanol

Flavonoids are considered one of the most diverse phenolic compounds possessing several valuable health benefits. The present study aimed at gathering all correlated reports, in which Sephadex® LH-20 (SLH) has been utilized as the final step to isolate or purify of flavonoid derivatives among all plant families. Overall, 189 flavonoids have been documented, while the majority were identified from the Asteraceae, Moraceae, and Poaceae families. Application of SLH has led to isolate 79 flavonols, 63 flavones, and 18 flavanones. Homoisoflavanoids, and proanthocyanidins have only been isolated from the Asparagaceae and Lauraceae families, respectively, while the Asteraceae was the richest in flavones possessing 22 derivatives. Six flavones, four flavonols, three homoisoflavonoids, one flavanone, a flavanol, and an isoflavanol have been isolated as the new secondary metabolites. This technique has been able to isolate quercetin from 19 plant species, along with its 31 derivatives. Pure methanol and in combination with water, chloroform, and dichloromethane have generally been used as eluents. This comprehensive review provides significant information regarding to remarkably use of SLH in isolation and purification of flavonoids from all the plant families; thus, it might be considered an appreciable guideline for further phytochemical investigation of these compounds.

Plant diversity of Ghorkhod Protected Area, NE Iran

Phytotaxa ◽  
2016 ◽  
Vol 249 (1) ◽  
pp. 118 ◽  
Author(s):  
FARSHID MEMARIANI ◽  
MOHAMMAD REZA JOHARCHI ◽  
HOSSEIN AKHANI
Keyword(s):  
Plant Species ◽  
Protected Area ◽  
Life Form ◽  
Vascular Plant ◽  
Floristic Composition ◽  
Transitional Zone ◽  
Plant Groups ◽  
Wide Range ◽  
Plant Families ◽  
Ne Iran

Ghorkhod Protected Area (GPA) is located in a transitional zone among different biogeographical units in North Khorassan Province, NE Iran. The study area is mainly a mountainous region in western extensions of Khorassan-Kopet Dagh floristic province. We investigated the floristic composition, life form spectrum and phytogeography of the study area through several random collection efforts and 200 vegetation samples (reléves) in selected vegetation types during 2007–2012. A total of 663 vascular plant species belonging to 367 genera and 81 families are recorded as native and naturalized in GPA. Angiosperms and Dicots are among the most diverse plant groups. The richest plant families are Asteraceae (88 species), Poaceae (78), Lamiaceae (45), Brassicaceae (43), Fabaceae (38), and Caryophyllaceae (32). The genera Allium L. (17 species), Astragalus L. (15) and Cousinia Cass. (12) are the richest ones, however, the majority of the species belongs to oligotypic and monotypic genera. Life form spectrum of the study area is dominated by hemicryptophytes (38.9%) and therophytes (23.4%). Allium transvestiens Vved., Agropyron desertorum Schult., Helictotrichon turcomanicum Czopanov and Piptatherum latifolium (Roshev.) Nevski are recorded as new to Iran. The core flora of the area has the Irano-Turanian origin. However, the wide-range and widespread elements are also well represented in the study area. GPA is inhabited by several endemic, rare and narrow-range plant species, indicating the biodiversity importance of the study area in NE Iran.

scholarly journals Co-occurrence of latent Dickeya and Pectobacterium species in potato seed tuber samples from northern Finland

2021 ◽  
Vol 30 (1) ◽  
Author(s):  
Yeshitila Degefu
Keyword(s):  
Seed Tuber ◽  
Single Species ◽  
Soft Rot ◽  
Potato Seed ◽  
Pcr Assay ◽  
Diagnostic Pcr ◽  
Pectobacterium Atrosepticum ◽  
Dickeya Solani ◽  
Different Strains ◽  
Potato Seed Tuber

Recent methodological developments have uncovered the etiological diversity of the potato blackleg and soft rot Pectobacteriaceae. At least five species in the genera Dickeya and Pectobacterium have been confirmed to cause blackleg on potatoes in Finland. The bacteria are seed borne and remain latent in the tuber until conditions favourable for growth, multiplication and infection prevail. Tubers could be infected by one or more of these species. This short communication is based on the results of molecular detection data collected for more than 14 years from potato seed lots produced in Finland. Diagnostic PCR assay specific to Dickeya solani, Pectobacterium atrosepticum, Pectobacterium carotovorum, P. brasiliense and P. parmentieri revealed that potatoes are infected by one or more of these species; it also revealed that single species infection is more common than multiple colonization. An event of simultaneous occurrences of different strains from the Pectobacterium species appears to be more frequent than that observed between Dickeya and Pectobacterium species. The absence of co-occurrence of Dickeya solani and Pectobacterium atrosepticum is intriguing.

scholarly journals Emerging fungal pathogen of an invasive grass: Implications for competition with native plant species

PLoS ONE ◽  
2021 ◽  
Vol 16 (3) ◽  
pp. e0237894
Author(s):  
Amy E. Kendig ◽  
Vida J. Svahnström ◽  
Ashish Adhikari ◽  
Philip F. Harmon ◽  
S. Luke Flory
Keyword(s):  
Invasive Species ◽  
Plant Species ◽  
Fungal Pathogen ◽  
Native Species ◽  
Grass Species ◽  
Leaf Spot Disease ◽  
Native Plant ◽  
Invasive Grass ◽  
Native Plant Species ◽  
Species Specific

Infectious diseases and invasive species can be strong drivers of biological systems that may interact to shift plant community composition. For example, disease can modify resource competition between invasive and native species. Invasive species tend to interact with a diversity of native species, and it is unclear how native species differ in response to disease-mediated competition with invasive species. Here, we quantified the biomass responses of three native North American grass species (Dichanthelium clandestinum, Elymus virginicus, and Eragrostis spectabilis) to disease-mediated competition with the non-native invasive grass Microstegium vimineum. The foliar fungal pathogen Bipolaris gigantea has recently emerged in Microstegium populations, causing a leaf spot disease that reduces Microstegium biomass and seed production. In a greenhouse experiment, we examined the effects of B. gigantea inoculation on two components of competitive ability for each native species: growth in the absence of competition and biomass responses to increasing densities of Microstegium. Bipolaris gigantea inoculation affected each of the three native species in unique ways, by increasing (Dichanthelium), decreasing (Elymus), or not changing (Eragrostis) their growth in the absence of competition relative to mock inoculation. Bipolaris gigantea inoculation did not, however, affect Microstegium biomass or mediate the effect of Microstegium density on native plant biomass. Thus, B. gigantea had species-specific effects on native plant competition with Microstegium through species-specific biomass responses to B. gigantea inoculation, but not through modified responses to Microstegium density. Our results suggest that disease may uniquely modify competitive interactions between invasive and native plants for different native plant species.

scholarly journals Diversity and composition of plant species in the forest over limestone of Rajah Sikatuna Protected Landscape, Bohol, Philippines

2020 ◽  
Vol 8 ◽  
Author(s):  
Wilbert Aureo ◽  
Tomas Reyes ◽  
Francis Carlo Mutia ◽  
Reizl Jose ◽  
Mary Beth Sarnowski
Keyword(s):  
Plant Species ◽  
Conservation Strategies ◽  
Importance Value ◽  
Accumulation Curve ◽  
Representative Species ◽  
Special Area ◽  
Plant Families ◽  
Area Of Concern ◽  
Common Plant ◽  
Management And Conservation

Rajah Sikatuna Protected Landscape (RSPL), considered the last frontier within the Central Visayas region, is an ideal location for flora and fauna research due to its rich biodiversity. This recent study was conducted to determine the plant species composition and diversity and to select priority areas for conservation to update management strategy. A field survey was carried out in fifteen (15) 20 m x 100 m nested plots established randomly in the forest over limestone of RSPL from July to October 2019. Three hundred and sixty eight (368) species of plants were identified up to species level. This represented 327 angiosperms, one gymnosperm and 40 pteridophytes. Common plant families with more than 10 representative species were Moraceae, Meliaceae, Lauraceae, Dipterocarpaceae, Rubiaceae, Myrtaceae, Phyllanthaceae, Annonaceae, Araceae and Lauraceae. There were 93 (28%) endemic and 46 (14%) threatened species (vulnerable to critically endangered) observed. The cluster analysis and species accumulation curve suggests that plant species are not homogeneously distributed which implies that different management and conservation strategies should be implemented across RSPL. These results not only indicate the importance of RSPL, but also highlights areas with higher diversity and concentration of threatened and endemic species as a special area of concern. Furthermore, areas with high biodiversity value were recommended for immediate protection, while areas with low biodiversity value were recommended for reforestation programmes using species with high importance value.

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