scholarly journals Geodiversity primarily shapes large-scale limnology and aquatic species distribution in the northern Neotropics

2021 ◽  
Author(s):  
Laura Anahí Macario-González ◽  
Sergio Cohuo ◽  
Philipp Hoelzmann ◽  
Liseth Pérez ◽  
Manuel Elías-Gutiérrez ◽  
...  
Keyword(s):  
Aquatic Ecosystem ◽  
Structural Equation ◽  
Large Scale ◽  
Principal Component ◽  
Neotropical Region ◽  
Biological Data ◽  
Ecosystem Structure ◽  
Aquatic Species ◽  
Southern Mexico ◽  
Geochemical Properties

Abstract. Geodiversity is recognized as one of the most important drivers of ecosystems characteristics and biodiversity globally. However, in the northern Neotropics, the contribution of highly diverse landscapes and geological history in structuring large-scale patterns of limnology and aquatic species associations remain poorly understood. We evaluate the interaction between geodiversity, limnology and freshwater ostracode assemblages to explore drivers of aquatic ecosystem structure from southern Mexico to Nicaragua. Cluster analysis based on geological, limnological, sedimentological and mineralogical characteristics of 76 aquatic ecosystems (karst, volcanic, tectonic) reveal two main limnological regions: (1) Karst terraces from the Yucatán Peninsula and northern Guatemala, and (2) volcanic terrains of the Guatemalan highlands, El Salvador and Honduras mid-elevations, and Nicaraguan lowlands. In addition, seven limnological subregions were recognized, attesting high limnological heterogeneity. Principal Component Analysis identifies water ionic and sediment composition as most influential for aquatic ecosystem classification and given their source of formation, we recognized geology as the fundamental determinant for large-scale limnological patterns. Multiparametric analyses based on biological data revealed that species association represent disjunct faunas. For instance, five species associations are closely related to limnological regions. Structural equation modelling reveals a strong influence of limnology and elevation on the biological composition, but geodiversity resulted in the most important driver. The confinement of species associations is attributed to regional lake geochemistry. We deduce a linear, continuous and primary influence of geodiversity for limnological structure, geochemical properties and aquatic biological composition in Lakes of the northern Neotropical region.

scholarly journals Cascading climate effects and related ecological consequences during past centuries

2012 ◽  
Vol 8 (5) ◽  
pp. 1527-1540 ◽  
Author(s):  
B. Naef-Daenzer ◽  
J. Luterbacher ◽  
M. Nuber ◽  
T. Rutishauser ◽  
W. Winkel
Keyword(s):  
Life History ◽  
Atmospheric Circulation ◽  
Structural Equation Model ◽  
Structural Equation ◽  
Large Scale ◽  
Equation Model ◽  
Great Tit ◽  
Ecosystem Structure ◽  
Breeding Phenology ◽  
Climate Effects

Abstract. The interface between climate and ecosystem structure and function is incompletely understood, partly because few ecological records start before the recent warming phase. Here, we analyse an exceptional 100-yr long record of the great tit (Parus major) population in Switzerland in relation to climate and habitat phenology. Using structural equation analysis, we demonstrate an uninterrupted cascade of significant influences of the large-scale atmospheric circulation (North-Atlantic Oscillation, NAO, and North-sea – Caspian Pattern, NCP) on habitat and breeding phenology, and further on fitness-relevant life history traits within great tit populations. We then apply the relationships of this analysis to reconstruct the circulation-driven component of fluctuations in great tit breeding phenology and productivity on the basis of new seasonal NAO and NCP indices back to 1500 AD. According to the structural equation model, the multi-decadal oscillation of the atmospheric circulation likely led to substantial variation in habitat phenology, productivity and consequently, tit population fluctuations with minima during the "Maunder Minimum" (∼ 1650–1720) and the Little Ice Age Type Event I (1810–1850). The warming since 1975 was not only related with a quick shift towards earlier breeding, but also with the highest productivity since 1500, and thus, the impact of the NAO and NCP has contributed to an unprecedented increase of the population. A verification of the structural equation model against two independent data series (1970–2000 and 1750–1900) corroborates that the retrospective model reliably depicts the major long-term NAO/NCP impact on ecosystem parameters. The results suggest a complex cascade of climate effects beginning at a global scale and ending at the level of individual life histories. This sheds light on how large-scale climate conditions substantially affect major life history parameters within a population, and thus influence key ecosystem parameters at the scale of centuries.

scholarly journals Assessment of Toxicity of Coragen, an Insecticide, on Aquatic Ecosystem Using Hydra as a Model

2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Borgave Seema Sachin
Keyword(s):  
Aquatic Ecosystem ◽  
Aquatic Ecosystems ◽  
Large Scale ◽  
Environmental Issues ◽  
Model System ◽  
Aquatic Species ◽  
Long Run ◽  
Low Concentrations ◽  
Ability To Regenerate ◽  
Harmful Effects

Overuse of insecticides, without analyzing their harmful effects, can cause serious environmental issues. Coragen is a commonly used insecticide due to its broad range activity. In spite of enormous use, there are hardly any reports on the effects of coragen on non-target aquatic species and thus the environmental risk of coragen to aquatic ecosystem is underestimated. The present study was carried out to evaluate the potential risk of coragen on the water bodies and the life therein using hy dra, a fresh water simple diploblastic invertebrate, as the model system. Coragen was found to reduce the life expectancy of hydra along with the reduced ability to regenerate at various tried doses. The present study thus suggests precocious use of coragen due to its harmful effects on aquatic animals at v ery low concentrations also. The continued overuse of coragen may disturb the aquatic ecosystems at a large scale in long run.

Study of Biochemical and Clinical Markers in Steatohepatitis Related to Obesity

2018 ◽  
Vol 69 (6) ◽  
pp. 1501-1505
Author(s):  
Roxana Maria Livadariu ◽  
Radu Danila ◽  
Lidia Ionescu ◽  
Delia Ciobanu ◽  
Daniel Timofte
Keyword(s):  
Liver Disease ◽  
Liver Biopsy ◽  
Large Scale ◽  
Biological Data ◽  
Obese Patients ◽  
Clinical Markers ◽  
Mean Values ◽  
Nonalcoholic Fatty Liver ◽  
Obstructive Sleep ◽  
Increased Risk

Nonalcoholic fatty liver disease (NAFLD) is highly associated to obesity and comprises several liver diseases, from simple steatosis to steatohepatitis (NASH) with increased risk of developing progressive liver fibrosis, cirrhosis and hepatocellular carcinoma. Liver biopsy is the gold standard in diagnosing the disease, but it cannot be used in a large scale. The aim of the study was the assessment of some non-invasive clinical and biological markers in relation to the progressive forms of NAFLD. We performed a prospective study on 64 obese patients successively hospitalised for bariatric surgery in our Surgical Unit. Patients with history of alcohol consumption, chronic hepatitis B or C, other chronic liver disease or patients undergoing hepatotoxic drug use were excluded. All patients underwent liver biopsy during sleeve gastrectomy. NAFLD was present in 100% of the patients: hepatic steatosis (38%), NASH with the two forms: with fibrosis (31%) and without fibrosis (20%), cumulating 51%; 7 patients had NASH with vanished steatosis. NASH with fibrosis statistically correlated with metabolic syndrome (p = 0.036), DM II (p = 0.01) and obstructive sleep apnea (p = 0.02). Waist circumference was significantly higher in the steatohepatitis groups (both with and without fibrosis), each 10 cm increase increasing the risk of steatohepatitis (p = 0.007). The mean values of serum fibrinogen and CRP were significantly higher in patients having the progressive forms of NAFLD. Simple clinical and biological data available to the practitioner in medicine can be used to identify obese patients at high risk of NASH, aiming to direct them to specialized medical centers.

scholarly journals Content-Based Estimation of Brain MRI Tilt in Three Orthogonal Directions

2021 ◽  
Author(s):  
Pooja Prabhu ◽  
A. K. Karunakar ◽  
Sanjib Sinha ◽  
N. Mariyappa ◽  
G. K. Bhargava ◽  
...  
Keyword(s):  
Large Scale ◽  
Brain Mri ◽  
Similarity Measures ◽  
Principal Component ◽  
Brain Anatomy ◽  
Morphological Operations ◽  
Mr Images ◽  
Tilt Correction ◽  
Brain Mr Images ◽  
The Brain

AbstractIn a general scenario, the brain images acquired from magnetic resonance imaging (MRI) may experience tilt, distorting brain MR images. The tilt experienced by the brain MR images may result in misalignment during image registration for medical applications. Manually correcting (or estimating) the tilt on a large scale is time-consuming, expensive, and needs brain anatomy expertise. Thus, there is a need for an automatic way of performing tilt correction in three orthogonal directions (X, Y, Z). The proposed work aims to correct the tilt automatically by measuring the pitch angle, yaw angle, and roll angle in X-axis, Z-axis, and Y-axis, respectively. For correction of the tilt around the Z-axis (pointing to the superior direction), image processing techniques, principal component analysis, and similarity measures are used. Also, for correction of the tilt around the X-axis (pointing to the right direction), morphological operations, and tilt correction around the Y-axis (pointing to the anterior direction), orthogonal regression is used. The proposed approach was applied to adjust the tilt observed in the T1- and T2-weighted MR images. The simulation study with the proposed algorithm yielded an error of 0.40 ± 0.09°, and it outperformed the other existing studies. The tilt angle (in degrees) obtained is ranged from 6.2 ± 3.94, 2.35 ± 2.61, and 5 ± 4.36 in X-, Z-, and Y-directions, respectively, by using the proposed algorithm. The proposed work corrects the tilt more accurately and robustly when compared with existing studies.

scholarly journals Cyberstalking Victimization Model Using Criminological Theory: A Systematic Literature Review, Taxonomies, Applications, Tools, and Validations

Electronics ◽  
2021 ◽  
Vol 10 (14) ◽  
pp. 1670
Author(s):  
Waheeb Abu-Ulbeh ◽  
Maryam Altalhi ◽  
Laith Abualigah ◽  
Abdulwahab Ali Almazroi ◽  
Putra Sumari ◽  
...  
Keyword(s):  
Data Analysis ◽  
Structural Equation ◽  
Large Scale ◽  
Review Paper ◽  
Essential Element ◽  
Routine Activities ◽  
Criminological Theory ◽  
Equation Modeling ◽  
Future Research ◽  
Proposed Model

Cyberstalking is a growing anti-social problem being transformed on a large scale and in various forms. Cyberstalking detection has become increasingly popular in recent years and has technically been investigated by many researchers. However, cyberstalking victimization, an essential part of cyberstalking, has empirically received less attention from the paper community. This paper attempts to address this gap and develop a model to understand and estimate the prevalence of cyberstalking victimization. The model of this paper is produced using routine activities and lifestyle exposure theories and includes eight hypotheses. The data of this paper is collected from the 757 respondents in Jordanian universities. This review paper utilizes a quantitative approach and uses structural equation modeling for data analysis. The results revealed a modest prevalence range is more dependent on the cyberstalking type. The results also indicated that proximity to motivated offenders, suitable targets, and digital guardians significantly influences cyberstalking victimization. The outcome from moderation hypothesis testing demonstrated that age and residence have a significant effect on cyberstalking victimization. The proposed model is an essential element for assessing cyberstalking victimization among societies, which provides a valuable understanding of the prevalence of cyberstalking victimization. This can assist the researchers and practitioners for future research in the context of cyberstalking victimization.

scholarly journals Principal component analysis tomography in near-infrared integral field spectroscopy of young stellar objects – I. Revisiting the high-mass protostar W33A

2021 ◽  
Vol 503 (1) ◽  
pp. 270-291
Author(s):  
F Navarete ◽  
A Damineli ◽  
J E Steiner ◽  
R D Blum
Keyword(s):  
Large Scale ◽  
Near Infrared ◽  
Rotation Axis ◽  
Principal Component ◽  
Young Stellar Objects ◽  
High Mass ◽  
Continuum Emission ◽  
Rotating Disc ◽  
Stellar Objects ◽  
K Band

ABSTRACT W33A is a well-known example of a high-mass young stellar object showing evidence of a circumstellar disc. We revisited the K-band NIFS/Gemini North observations of the W33A protostar using principal components analysis tomography and additional post-processing routines. Our results indicate the presence of a compact rotating disc based on the kinematics of the CO absorption features. The position–velocity diagram shows that the disc exhibits a rotation curve with velocities that rapidly decrease for radii larger than 0.1 arcsec (∼250 au) from the central source, suggesting a structure about four times more compact than previously reported. We derived a dynamical mass of 10.0$^{+4.1}_{-2.2}$ $\rm {M}_\odot$ for the ‘disc + protostar’ system, about ∼33 per cent smaller than previously reported, but still compatible with high-mass protostar status. A relatively compact H2 wind was identified at the base of the large-scale outflow of W33A, with a mean visual extinction of ∼63 mag. By taking advantage of supplementary near-infrared maps, we identified at least two other point-like objects driving extended structures in the vicinity of W33A, suggesting that multiple active protostars are located within the cloud. The closest object (Source B) was also identified in the NIFS field of view as a faint point-like object at a projected distance of ∼7000 au from W33A, powering extended K-band continuum emission detected in the same field. Another source (Source C) is driving a bipolar $\rm {H}_2$ jet aligned perpendicular to the rotation axis of W33A.

scholarly journals Farmers’ Perceptions of Commercial Insect-Based Feed for Sustainable Livestock Production in Kenya

2021 ◽  
Vol 13 (10) ◽  
pp. 5359
Author(s):  
Afrika Onguko Okello ◽  
Jonathan Makau Nzuma ◽  
David Jakinda Otieno ◽  
Michael Kidoido ◽  
Chrysantus Mbi Tanga
Keyword(s):  
Food Systems ◽  
Large Scale ◽  
Principal Component ◽  
Farm Income ◽  
Purchase Decisions ◽  
Wealth Status ◽  
Feed Formulation ◽  
Alternative Protein ◽  
Livestock Products ◽  
The Impact

The utilization of insect-based feeds (IBF) as an alternative protein source is increasingly gaining momentum worldwide owing to recent concerns over the impact of food systems on the environment. However, its large-scale adoption will depend on farmers’ acceptance of its key qualities. This study evaluates farmer’s perceptions of commercial IBF products and assesses the factors that would influence its adoption. It employs principal component analysis (PCA) to develop perception indices that are subsequently used in multiple regression analysis of survey data collected from a sample of 310 farmers. Over 90% of the farmers were ready and willing to use IBF. The PCA identified feed performance, social acceptability of the use of insects in feed formulation, feed versatility and marketability of livestock products reared on IBF as the key attributes that would inform farmers’ purchase decisions. Awareness of IBF attributes, group membership, off-farm income, wealth status and education significantly influenced farmers’ perceptions of IBF. Interventions such as experimental demonstrations that increase farmers’ technical knowledge on the productivity of livestock fed on IBF are crucial to reducing farmers’ uncertainties towards acceptability of IBF. Public partnerships with resource-endowed farmers and farmer groups are recommended to improve knowledge sharing on IBF.

scholarly journals Large-Scale Precipitation Variability over Northwest China Inferred from Tree Rings

2011 ◽  
Vol 24 (13) ◽  
pp. 3457-3468 ◽  
Author(s):  
Keyan Fang ◽  
Xiaohua Gou ◽  
Fahu Chen ◽  
Edward Cook ◽  
Jinbao Li ◽  
...  
Keyword(s):  
Tree Ring ◽  
Large Scale ◽  
Principal Component ◽  
Northwest China ◽  
Poor Quality ◽  
Contour Method ◽  
Precipitation Reconstruction ◽  
Nw China ◽  
Climate Station ◽  
Instrumental Records

Abstract A preliminary study of a point-by-point spatial precipitation reconstruction for northwestern (NW) China is explored, based on a tree-ring network of 132 chronologies. Precipitation variations during the past ~200–400 yr (the common reconstruction period is from 1802 to 1990) are reconstructed for 26 stations in NW China from a nationwide 160-station dataset. The authors introduce a “search spatial correlation contour” method to locate candidate tree-ring predictors for the reconstruction data of a given climate station. Calibration and verification results indicate that most precipitation reconstruction models are acceptable, except for a few reconstructions (stations Hetian, Hami, Jiuquan, and Wuwei) with degraded quality. Additionally, the authors compare four spatial precipitation factors in the instrumental records and reconstructions derived from a rotated principal component analysis (RPCA). The northern and southern Xinjiang factors from the instrumental and reconstructed data agree well with each other. However, differences in spatial patterns between the instrumentation and reconstruction data are also found for the other two factors, which probably result from the relatively poor quality of a few stations. Major drought events documented in previous studies—for example, from the 1920s through the 1930s for the eastern part of NW China—are reconstructed in this study.

scholarly journals Graph Convolutional Network for Drug Response Prediction Using Gene Expression Data

Mathematics ◽  
2021 ◽  
Vol 9 (7) ◽  
pp. 772
Author(s):  
Seonghun Kim ◽  
Seockhun Bae ◽  
Yinhua Piao ◽  
Kyuri Jo
Keyword(s):  
Gene Expression ◽  
Gene Expression Data ◽  
Large Scale ◽  
Drug Response ◽  
Response Prediction ◽  
Biological Data ◽  
Expression Data ◽  
Convolutional Network ◽  
Essential Information ◽  
Protein Protein Interaction

Genomic profiles of cancer patients such as gene expression have become a major source to predict responses to drugs in the era of personalized medicine. As large-scale drug screening data with cancer cell lines are available, a number of computational methods have been developed for drug response prediction. However, few methods incorporate both gene expression data and the biological network, which can harbor essential information about the underlying process of the drug response. We proposed an analysis framework called DrugGCN for prediction of Drug response using a Graph Convolutional Network (GCN). DrugGCN first generates a gene graph by combining a Protein-Protein Interaction (PPI) network and gene expression data with feature selection of drug-related genes, and the GCN model detects the local features such as subnetworks of genes that contribute to the drug response by localized filtering. We demonstrated the effectiveness of DrugGCN using biological data showing its high prediction accuracy among the competing methods.

scholarly journals Codon usage bias and environmental adaptation in microbial organisms

2021 ◽  
Author(s):  
Davide Arella ◽  
Maddalena Dilucca ◽  
Andrea Giansanti
Keyword(s):  
Codon Usage ◽  
Codon Usage Bias ◽  
Pathogenic Bacteria ◽  
Large Scale ◽  
Synonymous Codon ◽  
Principal Component ◽  
Gene Copy ◽  
Phenotypic Traits ◽  
Translational Efficiency ◽  
Microbial Organisms

AbstractIn each genome, synonymous codons are used with different frequencies; this general phenomenon is known as codon usage bias. It has been previously recognised that codon usage bias could affect the cellular fitness and might be associated with the ecology of microbial organisms. In this exploratory study, we investigated the relationship between codon usage bias, lifestyles (thermophiles vs. mesophiles; pathogenic vs. non-pathogenic; halophilic vs. non-halophilic; aerobic vs. anaerobic and facultative) and habitats (aquatic, terrestrial, host-associated, specialised, multiple) of 615 microbial organisms (544 bacteria and 71 archaea). Principal component analysis revealed that species with given phenotypic traits and living in similar environmental conditions have similar codon preferences, as represented by the relative synonymous codon usage (RSCU) index, and similar spectra of tRNA availability, as gauged by the tRNA gene copy number (tGCN). Moreover, by measuring the average tRNA adaptation index (tAI) for each genome, an index that can be associated with translational efficiency, we observed that organisms able to live in multiple habitats, including facultative organisms, mesophiles and pathogenic bacteria, are characterised by a reduced translational efficiency, consistently with their need to adapt to different environments. Our results show that synonymous codon choices might be under strong translational selection, which modulates the choice of the codons to differently match tRNA availability, depending on the organism’s lifestyle needs. To our knowledge, this is the first large-scale study that examines the role of codon bias and translational efficiency in the adaptation of microbial organisms to the environment in which they live.

Sign in / Sign up

Export Citation Format

Share Document