Sorghum-Phosphate Solubilizers Interactions: Crop Nutrition, Biotic Stress Alleviation, and Yield Optimization

Sweet sorghum [Sorghum bicolor (L.) Moench] is a highly productive, gluten-free cereal crop plant that can be used as an alternative energy resource, human food, and livestock feed or for biofuel-ethanol production. Phosphate fertilization is a common practice to optimize sorghum yield but because of high cost, environmental hazards, and soil fertility reduction, the use of chemical P fertilizer is discouraged. Due to this, the impetus to search for an inexpensive and eco-friendly microbiome as an alternative to chemical P biofertilizer has been increased. Microbial formulations, especially phosphate solubilizing microbiome (PSM) either alone or in synergism with other rhizobacteria, modify the soil nutrient pool and augment the growth, P nutrition, and yield of sorghum. The use of PSM in sorghum disease management reduces the dependence on pesticides employed to control the phytopathogens damage. The role of PSM in the sorghum cultivation system is, however, relatively unresearched. In this manuscript, the diversity and the strategies adopted by PSM to expedite sorghum yield are reviewed, including the nutritional importance of sorghum in human health and the mechanism of P solubilization by PSM. Also, the impact of solo or composite inoculations of biological enhancers (PSM) with nitrogen fixers or arbuscular mycorrhizal fungi is explained. The approaches employed by PSM to control sorghum phytopathogens are highlighted. The simultaneous bio-enhancing and biocontrol activity of the PS microbiome provides better options for the replacement of chemical P fertilizers and pesticide application in sustainable sorghum production practices.

Plant biodiversity and the regeneration of soil fertility

Fertile soils have been an essential resource for humanity for 10,000 y, but the ecological mechanisms involved in the creation and restoration of fertile soils, and especially the role of plant diversity, are poorly understood. Here we use results of a long-term, unfertilized plant biodiversity experiment to determine whether biodiversity, especially plant functional biodiversity, impacted the regeneration of fertility on a degraded sandy soil. After 23 y, plots containing 16 perennial grassland plant species had, relative to monocultures of these same species, ∼30 to 90% greater increases in soil nitrogen, potassium, calcium, magnesium, cation exchange capacity, and carbon and had ∼150 to 370% greater amounts of N, K, Ca, and Mg in plant biomass. Our results suggest that biodiversity, likely in combination with the increased plant productivity caused by higher biodiversity, led to greater soil fertility. Moreover, plots with high plant functional diversity, those containing grasses, legumes, and forbs, accumulated significantly greater N, K, Ca, and Mg in the total nutrient pool (plant biomass and soil) than did plots containing just one of these three functional groups. Plant species in these functional groups had trade-offs between their tissue N content, tissue K content, and root mass, suggesting why species from all three functional groups were essential for regenerating soil fertility. Our findings suggest that efforts to regenerate soil C stores and soil fertility may be aided by creative uses of plant diversity.

Soil Chemical Fertility Change Over 4 Decades In The Morvan Mountains And Influence of Tree Species (Burgundy, France)

Background: Intensive silvicultural practices and the planting of monospecific forests of coniferous, more productive compared to hardwoods, may threaten over the mid to long-term the sustainability of soil chemical fertility of forest ecosystems and is a major concern for forest managers and policy.Methods: We investigated the tree species effect (Quercus sessiliflora Smith, Fagus sylvatica L., Picea abies Karst., Pseudotsuga menziesii Mirb. Franco., Abies nordmanniana Spach. and Pinus nigra Arn. ssp laricio Poiret var corsicana) on the change over time of soil chemical properties and nutrient pool sizes in the mineral and organic layers of the soil during the 45 years after the plantation of the Breuil-Chenue common garden experiment (Burgundy, France). The organic and mineral soil layers down to 70 cm depth were sampled in the different monospecific plots in 1974, 2001 and 2019. Results: The Ca and Mg exchangeable pools and soil pH increased over the entire soil profile in most stands. However, the decrease of pH and the increase of exchange acidity in the topsoil layers under conifers and the overall decrease of exchangeable K pools in most stands highlighted that soil acidification is still on-going at this site but the intensity of this process depends on the tree species. Indeed, three groups of species could be distinguished: i) Nordmann fir / Norway spruce where acidolysis and chelation occurred, resulting in the most pronounced pH decrease in the topsoil, ii) Douglas fir / Laricio pine where acidification caused by elevated nitrification rates is probably currently compensated by larger weathering and/or atmospheric depositions fluxes, iii) and oak / beech where soil acidification was less intense. Counterintuitively, soil acidification at this site resulted in an increase in soil CEC which limited the loss of nutrient cations. This change in soil CEC was most likely explained by the precipitation/dissolution dynamics of aluminium (Al) (hydr)oxides in the interfoliar space of phyllosilicates and/or the increase in soil carbon (C) content in the topsoil layers. Conclusion: Tree species greatly and fairly rapidly (<45 years) influence the soil chemical fertility and the pedogenetic processes which in turn may impact forest ecosystem functions and services.

Long-Term Ecosystem Nutrient Pool Status for Aspen Forest Harvest Simulations on Glacial Till and Sandy Outwash Soils

Sandy outwash and glacial till soils compose large amounts of public forestland due to historically poor agricultural yields. The outwash soils have low fertility, poor nutrient retention and are restricted from whole-tree harvesting (WTH) in some states, whereas the glacial till has medium nutrient retention and fertility, and is unrestricted from WTH. To assess the long-term sustainability of harvesting, a nutrient budget was constructed from field measurements, the National Cooperative Soil Survey (NCSS) database, and literature values for stem-only harvesting (SOH) and WTH at a 45-year rotation length and 11 rotations were simulated. The budgets showed that SOH and WTH recovery years, or the time necessary for the inputs to match outputs through leaching and one harvest, exceeded common rotation lengths for both soil types under all weathering scenarios, and the average WTH reduced the total available rotations by one harvest. The large variation in soil nutrient pools and harvest removals complicated the ability to identify the difference between SOH and WTH early in the model, but differences became apparent with sequential harvests. The recovery years were 2–20 times the 45-year rotation length under all weathering rates. Taken together, models in this study bridge the gap between short- and long-term studies and bring into question the sustainability of WTH and SOH practices on nutrient-poor soils.

A Sensitivity Analysis of the SPACSYS Model

A sensitivity analysis is critical for determining the relative importance of model parameters to their influence on the simulated outputs from a process-based model. In this study, a sensitivity analysis for the SPACSYS model, first published in Ecological Modelling (Wu, et al., 2007), was conducted with respect to changes in 61 input parameters and their influence on 27 output variables. Parameter sensitivity was conducted in a ‘one at a time’ manner and objectively assessed through a single statistical diagnostic (normalized root mean square deviation) which ranked parameters according to their influence of each output variable in turn. A winter wheat field experiment provided the case study data. Two sets of weather elements to represent different climatic conditions and four different soil types were specified, where results indicated little influence on these specifications for the identification of the most sensitive parameters. Soil conditions and management were found to affect the ranking of parameter sensitivities more strongly than weather conditions for the selected outputs. Parameters related to drainage were strongly influential for simulations of soil water dynamics, yield and biomass of wheat, runoff, and leaching from soil during individual and consecutive growing years. Wheat yield and biomass simulations were sensitive to the ‘ammonium immobilised fraction’ parameter that related to soil mineralization and immobilisation. Simulations of CO2 release from the soil and soil nutrient pool changes were most sensitive to external nutrient inputs and the process of denitrification, mineralization, and decomposition. This study provides important evidence of which SPACSYS parameters require the most care in their specification. Moving forward, this evidence can help direct efficient sampling and lab analyses for increased accuracy of such parameters. Results provide a useful reference for model users on which parameters are most influential for different simulation goals, which in turn provides better informed decision making for farmers and government policy alike.

Anaerobic microbiota derived from the upper airways impact Staphylococcus aureus physiology

Staphylococcus aureus is associated with the development of persistent and severe inflammatory diseases of the upper airways. Yet, S. aureus is also carried asymptomatically in the sinonasal cavity of ∼50% of healthy adults. The cause(s) of this duality and host and microbial factors that tip the balance between S. aureus pathogenesis and commensalism are poorly understood. We have shown that by degrading mucins, anaerobic microbiota support the growth of airway pathogens by liberating metabolites that are otherwise unavailable. Given the widely reported culture-based detection of anaerobes from individuals with chronic rhinosinusitis (CRS), here we tested our hypothesis that CRS microbiota is characterized by a mucin degrading phenotype that alters S. aureus physiology. Using 16S rRNA gene sequencing, we indeed observed an increased prevalence and abundance of anaerobes in CRS relative to non-CRS controls. PICRUSt2-based functional predictions suggested increased mucin degradation potential among CRS microbiota that was confirmed by direct enrichment culturing. Prevotella, Fusobacterium, and Streptococcus comprised a core mucin-degrading community across CRS subjects which generated a nutrient pool that augmented S. aureus growth on mucin as a carbon source. Finally, using RNAseq, we observed that S. aureus transcription is profoundly altered in the presence of mucin-derived metabolites, though expression of several key metabolism- and virulence-associated pathways varied between CRS-derived bacterial communities. Together, these data support a model in which S. aureus metabolism and virulence in the upper airways is dependent upon the composition of co-colonizing microbiota and the metabolites they exchange.

Removal of invasive Scotch broom increases its negative effects on soil and plant communities

Scotch broom is an aggressive invasive species of major concern in coast Douglas-fir forests of the Pacific Northwest USA. Control efforts are common, but potential for ecosystem recovery following Scotch broom removal is unclear. We assessed the potential for ecosystem recovery following broom removal at two sites that contrasted strongly in soil quality (i.e., texture and nutrient pool size) in western Washington and Oregon. Comparisons were made among replicated plots where Scotch broom was never present (uninvaded), retained, or removed. Microclimate (photosynthetically active radiation (PAR), soil temperature and moisture), soil properties, and vegetation were monitored during 2013 to 2017. Scotch broom removal increased PAR and soil temperature at both sites but had limited effects on soil moisture. Concentrations of Ca, Mg, K, and P were significantly lower with Scotch broom removal compared to the uninvaded and retained treatments, with the effect being most pronounced at the low-quality site. NMS ordinations indicated that the treatments differed in vegetation composition, with limited evidence for recovery in the removal treatment. Nonnative and native species varied inversely in their abundance responses, where nonnative species abundance was greatest in the removal treatment, intermediate in the retained treatment, and lowest in the uninvaded treatment, indicating occurrence of a secondary invasion following removal. As with the soil response, effects were more pronounced at the low-quality site. Our findings indicate that Scotch broom removal exacerbates negative effects on soil and plant communities, with little evidence of ecosystem recovery over our study period. These findings highlight the importance of controlling Scotch broom invasions immediately after the species establishes, especially at low-quality sites that are more susceptible to Scotch broom invasion and negative legacy effects.

Nutrient Sustainability in Swiss Wood Extraction

Here, we present the approach to be implemented in the frame of a Swiss research project that recently started (July 2020). The overall aim is to protect the forest’s soil fertility and biodiversity. When choosing an extraction method, the nutrient storage of a respective forest stand should be considered in order to prevent the exploitation of the site-specific nutrient pool. This topic is timely because full-tree harvesting for energetic purposes has increased continuously in the last few years. In addition, summer logging in the foliage state is under discussion because climate change is increasingly reducing winter harvesting periods. We aim to determine the current nutrient pools of different Swiss forest sites by conducting comprehensive soil analyses considering pH value, exchangeable nutrient cations (Ca, Mg, K, Na, Mn, Fe, and Zn), as well as the contents of nitrogen, sulfur, phosphorus and carbon(org). Furthermore, nutrient fluxes such as weathering rate, deposition and soil leaching are considered. The resulting site-specific data are combined with expected nutrient removals over one rotation period, depending on tree species composition, forest stand development and extraction methods. In the frame of this project, two case studies will be implemented in beech woodland stands on sediments of the early and late Pleistocene, serving as a data basis to calculate nutrient balances and to formulate management recommendations. In the long-term, we aim to apply this method to Switzerland overall and develop software that allows an automatic calculation of site-specific nutrient balances in order to support future forest management planning and decision-making processes.

Microarthropod population dynamics in a subtropical deciduous forest of the Eastern-Ghat hill range in India in response to variation in edaphic factors

Background: Soil microarthropods are considered as major groups of soil fauna which facilitate the decomposition of organics in soil. In forests, the sustenance of nutrient pool is dependent on the density and diversity of these animals. Edaphic factors of habitat play vital role in species distribution of any region. Any changes in population structure of microarthropod may affect the ecosystem adversely. This study reports the seasonal variation of microarthropod population of the orders Collembola, Acari and Hymenoptera in five sampling zones, degraded (DF), dense mixed (DMF), open mixed (OMF), bamboo (BF) and wet land (WL) in a subtropical deciduous forest (Chandaka-Dampara) of Eastern India. Results: Seven species of Collembola and four species each of Acari and Hymenoptera were identified. Ecological indices did not show noticeable species diversity in different sampling zones of the forest. Heatmap analysis indicated high relative abundance of Collembola in WL irrespective of season. The abundance of Acari was high in OMF and DF, Hymenoptera in DMF and OMF for dry and wet season respectively. Wet season indicated significantly higher microarthropod population irrespective of species. The correlation colour matrix and principal component analysis (PCA) showed significant positive correlation of arthropod population with soil moisture and organic carbon. Significant population variation in the animal population were observed between dry and wet seasons. Conclusion: The forest floor was dominated by Collembola order of microarthropod species irrespective of sampling zone and season. Soil moisture and carbon contents in different seasons were found to be most sensitive growth regulators of microarthropod populations In Chandaka forest of Eastern India.

Nitrogen and phosphorus translocation of forest floor mosses as affected by a pulse of these nutrients

Aims Mosses are dominant in many ecosystems where nutrients from deposition are one of the main nutrient sources. However, it is difficult to evaluate mosses’ role in nutrient cycling without knowledge of how mosses use deposited nutrient inputs. To fill this gap, the present study aims to investigate: (i) how nitrogen (N) and phosphorus (P) concentrations of new-grown segments change along a gradient of N or P amount in a pulse treatment? (ii) how do a pulse of major nutrient (N or P) affect N or P translocation rate along a moss shoot? and (iii) to what extent do N or P translocation rates link to nutrient status of the new-grown segments of mosses? Methods We measured N and P concentrations of segments with different ages in two dominant forest floor mosses, Actinothuidium hookeri and Hylocomium splendens, on 8 days and 1 year after N and P pulse treatment with an in situ experiment in a subalpine fir forest in eastern Tibetan Plateau. Important Findings Both mosses were efficient in taking up nutrients from a pulse of either N or P. Nitrogen and P concentrations of new-grown segments were affected by nutrient pulse treatments. These N and P concentration changes were attributed to the initial N and P concentration of the young segments harvested 8 days after nutrient pulse treatments, suggesting that the captured nutrients were reallocated to the new-grown segments via translocation, which was largely controlled by a source–sink relationship. While no significant relationship was found between N translocation rate and N:P ratio of the new-grown segments, P translocation rate explained 21%–23% of the variance of N:P ratio of the new-grown segments, implying importance of P transport in supporting the new-grown sections. These results suggest that nutrient (N, P) translocation is a key process for mosses to utilize intermittent nutrient supply, and thus make mosses an important nutrient pool of the ecosystem.