scholarly journals Transcriptomic Changes Induced by Drought Stress in Hardneck Garlic during the Bolting/Bulbing Stage

Agronomy ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 246
Author(s):  
Xiangjun Zhou ◽  
Jorge Alberto Condori-Apfata ◽  
Xiaoqin Liu ◽  
Sandro Jhonatan Condori-Pacsi ◽  
Maria Valderrama Valencia ◽  
...  
Keyword(s):  
Drought Stress ◽  
Biological Process ◽  
Reduction Process ◽  
Leaf Water Content ◽  
Monocotyledonous Plant ◽  
Oxidation Reduction ◽  
Taste And Odor ◽  
Genes Encoding ◽  
Shock Proteins ◽  
Transcriptomic Changes

Garlic (Allium sativum L.) is an economically important, monocotyledonous plant with a strong taste and odor. Drought stress adversely affects its growth, development, and yield, particularly during the bolting/bulbing stage. Herein we performed RNA-seq to assess transcriptomic changes induced by drought stress in bolting/bulbing hardneck garlic plants (Purple Glazer). We observed that drought stress significantly reduced photosynthesis rate, fresh weight, and leaf water content. Transcriptomic analysis of garlic leaves under normal conditions and drought stress led to the identification of 5215 differentially expressed genes (2748 up- and 2467 downregulated). The upregulated DEGs were primarily involved in “biological process”, “metabolic process”, “oxidation-reduction process”, carbohydrate and lipid metabolism, and “proteolysis”, whereas the downregulated DEGs were mainly involved in “biological process” and metabolism of various molecules. In addition, genes encoding abscisic acid biosynthetic and catabolic enzymes, heat shock proteins, and E3 ubiquitin ligases were significantly altered by drought stress, indicating involvement in drought tolerance. A further comparison with the DEGs related to salinity stress-treated garlic revealed 867 and 305 DEGs with a similar and reverse expression alteration tendency, respectively.

scholarly journals Comparative transcriptome analysis of the hepatopancreas of Eriocheir sinensis following oral gavage with enrofloxacin

2017 ◽  
Vol 74 (4) ◽  
pp. 435-444 ◽  
Author(s):  
Feng-Jiao Zhu ◽  
Kun Hu ◽  
Zong-Ying Yang ◽  
Xian-Le Yang
Keyword(s):  
Biological Process ◽  
Reduction Process ◽  
Eriocheir Sinensis ◽  
Oral Gavage ◽  
Translational Initiation ◽  
Treatment Groups ◽  
Oxidation Reduction ◽  
Quality Checks ◽  
Important Drug ◽  
Cyp450 Enzyme

Enrofloxacin is an important drug that is widely used in the treatment of the diseased Eriocheir sinensis. This study compared transcriptome differences in the hepatopancreas of E. sinensis following oral gavage with enrofloxacin. Our study produced 80 228 728 and 88 888 706 raw reads from control and treatment groups, and after filtering and quality checks of the raw sequence reads, our analysis yielded 78 843 613 and 87 628 922 clean reads with a mean length of 126 bp from control and treatment groups, respectively. A total of 15 797 transcripts were assembled, with 11 975 transcripts annotated. Moreover, 2795 transcripts were judged to be differentially expressed genes. Gene ontology terms “biological process” and “metabolic process” were the most enriched in the oxidation–reduction process, translational initiation, membrane, cytoplasmic part, and hydrolase activity. Kyoto Encyclopedia of Genes and Genomes pathway analysis showed that metabolic and signal transduction pathways were significantly enriched. Furthermore, we found that gshB and the CYP450 enzyme system plays a role in the metabolism of enrofloxacin in the hepatopancreas of E. sinensis. This study identified differential transcripts related to transmembrane transport and drug metabolism in E. sinensis that could help develop understanding of the molecular basis of enrofloxacin metabolism in this economically important aquaculture species.

scholarly journals Transcriptomic Responses of Potato to Drought Stress

2021 ◽  
Author(s):  
Ernest B. Aliche ◽  
Tim Gengler ◽  
Irma Hoendervangers ◽  
Marian Oortwijn ◽  
Christian W. B. Bachem ◽  
...  
Keyword(s):  
Drought Stress ◽  
Tuber Yield ◽  
Lipid Transfer ◽  
Lipid Transfer Proteins ◽  
Expression Of Genes ◽  
Differential Gene ◽  
Shock Proteins ◽  
Transcriptomic Changes ◽  
Prolonged Stress ◽  
Alpha Glucosidase

AbstractTranscriptomic changes in plants during drought stress give insights into the mechanisms with which plants stabilise their metabolic processes in order to cope with the drought condition. In potato, understanding such drought-induced transcriptomic changes is critical because prolonged field drought interferes with tuber formation and bulking period of potato development, which eventually affects yield. We hypothesised that phenotypic drought responses of potato genotypes may be linked to differences in transcriptomic changes. Using an RNA sequencing approach, we investigated such transcriptomic changes in leaves of three cultivars (Biogold, Hansa and Lady Rosetta) under drought. We found more differentially expressed genes (DEGs) in the tolerant cultivars, Lady Rosetta and Biogold, than in the sensitive cultivar (Hansa). The differential gene expression trend reflected the phenotypic drought responses of the cultivars. For instance, we found in both Biogold and Lady Rosetta but not in Hansa, an upregulation of genes involved in carbohydrate metabolism (e.g., Alpha-glucosidase), flavonoid biosynthesis (e.g., Flavanone 3 beta-hydroxylase), lipid biosynthesis/transfer (e.g., nonspecific Lipid Transfer Proteins), heat shock proteins and secondary metabolites like phenolics and lignins. Furthermore, a prolonged drought stress resulted in reduced DEGs in Biogold and Hansa, but not in Lady Rosetta that also maintained its tuber yield under such prolonged stress suggesting a more robust drought tolerance. Our findings suggest that a synergistic expression of genes involved in several different aspects of drought response is required in order to obtain a robust tolerance.

scholarly journals Quantitative Response of Maize Vcmax25 to Persistent Drought Stress at Different Growth Stages

Water ◽  
2021 ◽  
Vol 13 (14) ◽  
pp. 1971
Author(s):  
Xingyang Song ◽  
Guangsheng Zhou ◽  
Qijin He ◽  
Huailin Zhou
Keyword(s):  
Drought Stress ◽  
Early Warning Systems ◽  
Growth And Yield ◽  
Leaf Water Content ◽  
Growth Stages ◽  
Leaf Stage ◽  
Maximum Value ◽  
Maize Varieties ◽  
Persistent Drought ◽  
Different Growth Stages

Drought stress has adverse effects on crop growth and yield, and its identification and monitoring play vital roles in precision crop water management. Accurately evaluating the effect of drought stress on crop photosynthetic capacity can provide a basis for decisions related to crop drought stress identification and monitoring as well as drought stress resistance and avoidance. In this study, the effects of different degrees of persistent drought in different growth stages (3rd leaf stage, 7th leaf stage and jointing stage) on the maximum carboxylation rate at a reference temperature of 25 °C (Vcmax25) of the first fully expanded leaf and its relationship to the leaf water content (LWC) were studied in a field experiment from 2013 to 2015. The results indicated that the LWC decreased continuously as drought stress continued and that the LWC decreased faster in the treatment with more irrigation. Vcmax25 showed a decreasing trend as the drought progressed but had no clear relationship to the growth stage in which the persistent drought occurred. Vcmax25 showed a significantly parabolic relationship (R2 = 0.701, p < 0.001) with the LWC, but the different degrees of persistent drought stress occurring in different growth stages had no distinct effect on the LWC values when Vcmax25 reached its maximum value or zero. The findings of this study also suggested that the LWC was 82.5 ± 0.5% when Vcmax25 reached its maximum value (42.6 ± 3.6 μmol m−2 s−1) and 67.6 ± 1.2% (extreme drought) when Vcmax25 reached zero. These findings will help to improve crop drought management and will be an important reference for crop drought identification, classification and monitoring as well as for the development of drought monitoring and early warning systems for other crops or maize varieties.

scholarly journals Accumulation of Silicon and Changes in Water Balance under Drought Stress in Brassica napus var. napus L.

Plants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 280
Author(s):  
Diana Saja-Garbarz ◽  
Agnieszka Ostrowska ◽  
Katarzyna Kaczanowska ◽  
Franciszek Janowiak
Keyword(s):  
Abscisic Acid ◽  
Drought Stress ◽  
Stomatal Conductance ◽  
Water Balance ◽  
Water Content ◽  
Oilseed Rape ◽  
Potential Evapotranspiration ◽  
Leaf Water Content ◽  
Optimal Conditions ◽  
Abscisic Acid Level

The aim of this study was to investigate the accumulation of silicon in oilseed rape and to characterize the changes in chosen water balance parameters in response to drought. The following parameters were estimated: water content, osmotic and water potential, evapotranspiration, stomatal conductance and abscisic acid level under optimal and drought conditions. It was shown that oilseed rape plants accumulate silicon after its supplementation to the soil, both in the case of silicon alone and silicon together with iron. It was revealed that silicon (without iron) helps maintain constant water content under optimal conditions. While no silicon influence on osmotic regulation was observed, a transpiration decrease was detected under optimal conditions after silicon application. Under drought, a reduction in stomatal conductance was observed, but it was similar for all plants. The decrease in leaf water content under drought was accompanied by a significant increase in abscisic acid content in leaves of control plants and those treated with silicon together with iron. To sum up, under certain conditions, silicon is accumulated even in non-accumulator species, such as oilseed rape, and presumably improves water uptake under drought stress.

Unusual Wetting Behavior of Liquid Metals on Porous Layer Formed at Surface of Iron Substrate Prepared by Oxidation-Reduction Process

2007 ◽  
Vol 561-565 ◽  
pp. 1699-1701
Author(s):  
Nobuyuki Takahira ◽  
Takeshi Yoshikawa ◽  
Toshihiro Tanaka
Keyword(s):  
Liquid Metal ◽  
Porous Layer ◽  
Liquid Metals ◽  
Reduction Process ◽  
Surface Oxidation ◽  
Porous Iron ◽  
Normal Contact ◽  
Wetting Behavior ◽  
Oxidation Reduction ◽  
Oxidized Iron

Unusual wetting behavior of liquid Cu was found on a surface-oxidized iron substrate in reducing atmosphere. Liquid Cu wetted and spread very widely on the iron substrate when a droplet was attached with the substrate in Ar-10%H2 after the surface oxidation of the substrate. The oxidationreduction process fabricates a porous layer at the surface of the iron substrate. The pores in the porous iron layer are 3-dimensionally interconnected. Thus, liquid metals, which are contacted with the reduced iron samples, penetrate into these pores by capillary force to cause the unusual wetting behavior. It has been already confirmed that liquid Ag, Sn, In and Bi show this phenomenon onto surface-porous iron samples as well as liquid Cu. This unusual wetting behavior of a liquid metal has been correlated to the normal contact angle of the liquid metal on a flat iron substrate.

Possible involvement of phosphoenolpyruvate carboxylase and NAD-malic enzyme in response to drought stress. A case study: a succulent nature of the C4-NAD-ME type desert plant, Salsola lanata (Chenopodiaceae)

2017 ◽  
Vol 44 (12) ◽  
pp. 1219
Author(s):  
Zhibin Wen ◽  
Mingli Zhang
Keyword(s):  
Enzyme Activity ◽  
Drought Stress ◽  
Phosphoenolpyruvate Carboxylase ◽  
Malic Enzyme ◽  
C4 Plants ◽  
Leaf Water Content ◽  
Transcriptional Level ◽  
Desert Plant ◽  
Severe Stress ◽  
Real Time Quantitative Pcr

The co-ordination between the primary carboxylating enzyme phosphoenolpyruvate carboxylase (PEPC) and the further decarboxylating enzymes is crucial to the efficiency of the CO2-concentrating mechanism in C4 plants, and investigations on more types of C4 plants are needed to fully understand their adaptation mechanisms. In this study we investigated the effect of drought on carboxylating enzyme PEPC, and the further decarboxylating NAD-malic enzyme (NAD-ME) of Salsola lanata Pall. (Chenopodiaceae) – an annual succulent C4-NAD-ME subtype desert plant. We investigated enzyme activity at the transcriptional level with real-time quantitative PCR and at the translational level by immunochemical methods, and compared S. lanata with other forms of studied C4 plants under drought stress. Results showed that only severe stress limited PEPC enzyme activity (at pH 8.0) of S. lanata significantly. Considering that PEPC enzyme activity (at pH 8.0) was not significantly affected by phosphorylation, the decrease of PEPC enzyme activity (at pH 8.0) of S. lanata under severe stress may be related with decreased PEPC mRNA. The suggestion of increased phosphorylation of the PEPC enzyme in plants under moderate stress was supported by the ratio of PEPC enzyme activity at pH 7.3/8.0, as PEPC enzyme is inhibited by L-malate and the evidence of the 50% inhibiting concentration of L-malate. NAD-ME activity decreased significantly under moderate and severe stress, and coincided with a change of leaf water content rather than the amount of α-NAD-ME mRNA and protein. Leaf dehydration may cause the decrease of NAD-ME activity under water stress. Compared with other C4 plants, the activities of PEPC and NAD-ME of S. lanata under drought stress showed distinct features.

Performance of poly-o-phenylenediamine and its carbon dot composite electrode in the removal of Cu2+ from its aqueous solution

2021 ◽  
pp. 2151037
Author(s):  
Yu Meng ◽  
Qing Zhong ◽  
Arzugul Muslim
Keyword(s):  
Aqueous Solution ◽  
Electrochemical Reduction ◽  
Composite Electrode ◽  
Reduction Process ◽  
Order Kinetic ◽  
Carbon Dot ◽  
First Order ◽  
Oxidation Reduction ◽  
Order Kinetic Model ◽  
Optimal Ph

Because −NH2 and −NH− in poly-[Formula: see text]-phenylenediamine (P[Formula: see text]PD) can interact strongly with the empty orbitals of Cu to show unique electrochemical activity, P[Formula: see text]PD is suitable for the removal of Cu[Formula: see text] by electrochemical oxidation–reduction process. In this study, with P[Formula: see text]PD and its carbon dot composite (CDs/P[Formula: see text]PD) as working electrodes, the electrochemical reduction and removal of Cu[Formula: see text] in the aqueous solution were carried out with the potentiostatic method. According to effects of voltage, pH of the solution, initial concentration of Cu[Formula: see text], and electrochemical reduction time on the Cu[Formula: see text] removal, the Cu[Formula: see text] removal ratios of P[Formula: see text]PD and CDs/P[Formula: see text]PD were up to 64.69% and 73.34%, respectively, at −0.2 V and the optimal pH. Additionally, results showed that these processes were in line with the quasi-first order kinetic model. Both P[Formula: see text]PD and CDs/P[Formula: see text]PD showed good reproducibility in six cycles. After five times of repeated usage, the regeneration efficiencies of P[Formula: see text]PD and CDs/P[Formula: see text]PD dropped to 77.04% and 79.36%, respectively.

scholarly journals Acidophilic green algal genome provides insights into adaptation to an acidic environment

2017 ◽  
Vol 114 (39) ◽  
pp. E8304-E8313 ◽  
Author(s):  
Shunsuke Hirooka ◽  
Yuu Hirose ◽  
Yu Kanesaki ◽  
Sumio Higuchi ◽  
Takayuki Fujiwara ◽  
...  
Keyword(s):  
Plasma Membrane ◽  
Draft Genome ◽  
Acidic Environment ◽  
Green Algal ◽  
Genes Encoding ◽  
Acidic Environments ◽  
Arsenic Detoxification ◽  
Shock Proteins ◽  
Acidophilic Algae ◽  
Algal Genome

Some microalgae are adapted to extremely acidic environments in which toxic metals are present at high levels. However, little is known about how acidophilic algae evolved from their respective neutrophilic ancestors by adapting to particular acidic environments. To gain insights into this issue, we determined the draft genome sequence of the acidophilic green alga Chlamydomonas eustigma and performed comparative genome and transcriptome analyses between C. eustigma and its neutrophilic relative Chlamydomonas reinhardtii. The results revealed the following features in C. eustigma that probably contributed to the adaptation to an acidic environment. Genes encoding heat-shock proteins and plasma membrane H+-ATPase are highly expressed in C. eustigma. This species has also lost fermentation pathways that acidify the cytosol and has acquired an energy shuttle and buffering system and arsenic detoxification genes through horizontal gene transfer. Moreover, the arsenic detoxification genes have been multiplied in the genome. These features have also been found in other acidophilic green and red algae, suggesting the existence of common mechanisms in the adaptation to acidic environments.

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