Conserved miRNAs modulate the expression of potential transcription factors of isoflavonoid biosynthetic pathway in soybean seeds

2019 ◽  
Vol 46 (4) ◽  
pp. 3713-3730 ◽  
Author(s):  
Om Prakash Gupta ◽  
Anil Dahuja ◽  
Archana Sachdev ◽  
Sweta Kumari ◽  
Pradeep Kumar Jain ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Biosynthetic Pathway ◽  
Soybean Seeds

scholarly journals Expression Characterization of Flavonoid Biosynthetic Pathway Genes and Transcription Factors in Peanut Under Water Deficit Conditions

2021 ◽  
Vol 12 ◽  
Author(s):  
Ghulam Kubra ◽  
Maryam Khan ◽  
Faiza Munir ◽  
Alvina Gul ◽  
Tariq Shah ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Water Deficit ◽  
Biosynthetic Pathway ◽  
Correlational Analysis ◽  
Accumulation Pattern ◽  
Yield Production ◽  
Expression Of Genes ◽  
Flavonoid Biosynthetic Pathway ◽  
Wide Range

Drought is one of the hostile environmental stresses that limit the yield production of crop plants by modulating their growth and development. Peanut (Arachis hypogaea) has a wide range of adaptations to arid and semi-arid climates, but its yield is prone to loss due to drought. Other than beneficial fatty acids and micronutrients, peanut harbors various bioactive compounds including flavonoids that hold a prominent position as antioxidants in plants and protect them from oxidative stress. In this study, understanding of the biosynthesis of flavonoids in peanut under water deficit conditions was developed through expression analysis and correlational analysis and determining the accumulation pattern of phenols, flavonols, and anthocyanins. Six peanut varieties (BARD479, BARI2011, BARI2000, GOLDEN, PG1102, and PG1265) having variable responses against drought stress have been selected. Higher water retention and flavonoid accumulation have been observed in BARI2011 but downregulation has been observed in the expression of genes and transcription factors (TFs) which indicated the maintenance of normal homeostasis. ANOVA revealed that the expression of flavonoid genes and TFs is highly dependent upon the genotype of peanut in a spatiotemporal manner. Correlation analysis between expression of flavonoid biosynthetic genes and TFs indicated the role of AhMYB111 and AhMYB7 as an inhibitor for AhF3H and AhFLS, respectively, and AhMYB7, AhTTG1, and AhCSU2 as a positive regulator for the expression of Ah4CL, AhCHS, and AhF3H, respectively. However, AhbHLH and AhGL3 revealed nil-to-little relation with the expression of flavonoid biosynthetic pathway genes. Correlational analysis between the expression of TFs related to the biosynthesis of flavonoids and the accumulation of phenolics, flavonols, and anthocyanins indicated coregulation of flavonoid synthesis by TFs under water deficit conditions in peanut. This study would provide insight into the role of flavonoid biosynthetic pathway in drought response in peanut and would aid to develop drought-tolerant varieties of peanut.

scholarly journals Gloriosa superba and Colchicum autumnale multi-tissue transcriptome analysis for colchicine pathway and rhizome development candidate gene identification

2019 ◽  
Author(s):  
John Samuel Bass ◽  
David R. Gang ◽  
Toni M. Kutchan ◽  
Ganapathy Sivakumar
Keyword(s):  
Transcription Factors ◽  
Biosynthetic Pathway ◽  
Gloriosa Superba ◽  
Colchicum Autumnale ◽  
Synthetic Drugs ◽  
Fundamental Information ◽  
Significant Barrier ◽  
Medicinal Properties ◽  
Based Medicine ◽  
Rhizome Development

Abstract Background The continued emergence of side-effects caused by synthetic drugs underscores the need for plant-based drugs in human medicine. Medicinal rhizomatous crops are a “goldmine for modern drugs”, and include such species as Gloriosa superba L. and Colchicum autumnale L., the producers of colchicine, a plant-based medicine. The natural isomer of bioactive colchicine is used to effectively treat major diseases such as cancer, cardiovascular disease, and gout. The medicinal properties of colchicine are well characterized, however, almost nothing is known about its biosynthesis. The paucity of information on the colchicine biosynthetic pathway is a significant barrier to biomanufacturing of this biomedicine. A comparative transcriptome study of G. superba and C. autumnale serves as a sequence resource to aid with identification of this biomedicine pathway and rhizome development genes for synthetic biotechnology toolbox, which will enable improved colchicine biomanufacturing. Result Transcriptomes of two colchicine synthesizing monocots G. superba and C. autumnale were interrogated to identify putative cDNAs encoding enzymes and transcription factors involved in the colchicine biosynthetic pathway and rhizome development. Mining of the transcriptomes using Blast2GO led to the identification from G. superba and C. autumnale, respectively, of 20 and 29 candidate colchicine biosynthetic genes N-methyltransferases, 3-O-methyltransferases, cytochrome P450s, a class that could catalyze several steps in the pathway, and N-acetyltransferases. Similarly, 19 and 15 candidate rhizome developmental genes, which belongs to several classes including GIGANTEA, CONSTANS, Phytochrome B, Sucrose Synthase), Flowering Locus T, and REVOLUTA. Likewise, about 16 and 12 transcription factors involved in regulating rhizome development and secondary metabolic pathways in rhizomes such as MADS-box, AP2-EREBP, bHLH, MYB, NAC, and WRKY were also found in G. superba and C. autumnale, respectively. Conclusion The predicted genes in G. superba and C. autumnale encode colchicine pathway enzymes that provide fundamental information for plant-based biomedicine engineering in biorhizomes and microorganisms, a potentially important area of synthetic biotechnology. Additionally, increasing our understanding of rhizome functional genomics will lead to improved colchicine biomanufacturing, and generate important knowledge that can be applied to many other medicinal plant species, allowing for the engineered production of additional biomedicines in medicinal rhizomes.

The Hexosamine Biosyntheic Pathway and Platinum-Ethylenedicysteine-Glucosamine (Pt-ECG) for Targeted Therapy in Diffuse Large B-Cell Lymphoma

Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 587-587
Author(s):  
Lan V Pham ◽  
Jerry Bryant ◽  
Archito T. Tamayo ◽  
Richard Mendez ◽  
Edna Chum ◽  
...  
Keyword(s):  
Transcription Factors ◽  
B Cell ◽  
Cancer Biology ◽  
Biosynthetic Pathway ◽  
B Cell Lymphoma ◽  
Regulation Of Transcription ◽  
Growth And Survival ◽  
Lead Compounds ◽  
Hexosamine Pathway ◽  
Large B Cell

Abstract Abstract 587 Aggressive non-Hodgkin lymphomas (NHL), such as diffuse large B cell lymphomas (DLBCL), are very common in the US with increasing incidences. Although these lymphomas are now potentially curable, almost half the treated patients still develop relapsed/refractory disease with poor survival outcomes, indicating an urgent need for better therapeutic approaches with improved efficacy. The hexosamine signaling pathway terminating in O-linked N-acetyl glucosamine (O-GlcNAc) cycling has been implicated in cellular signaling cascades and regulation of transcription factors involved in cancer biology. Biological functions of the hexosamine biosynthetic signaling pathways need elucidation, to determine whether altered O-GlcNAc metabolism plays a significant role in hematologic tumors such as DLBCL, and utilize this bifunctional pathway as a targeted therapeutic strategy in DLBCL. We have identified key enzymes of the hexosamine biosynthetic pathways to be highly-expressed in DLBCL cell lines and patient tumor cells. In contrast to normal circulating and tonsillar B cells, DLBCL cells expressed high levels of the rate limiting enzyme glutamine: fructose-6-phosphate amidotransferase (GFAT) as well as terminating enzyme O-GlcNAc transferase (OGT). We discovered that several key growth and survival transcription factors, such as NF-kB and NFAT, known to be highly-activated in DLBCL, are linked to the hexoasmine biosynthetic pathway. We demonstrated that both NF-kB (p65) and NFATc1 directly associated with OGT, and down-regulation of OGT by siRNA inhibits these transcription factors activation, suggesting that both NF-kB-p65 and NFATc1 require O-GlcNAc glycosylation by OGT for their activation. ChiP on Chip analysis on NFATc1 indicated that this transcription factor regulates a set of genes involved in glucose metabolism, including hexokinase and GFAT. These results suggest that the hexosamine pathway is highly active and utilized in DLBCL, and that exploiting this bi-functional pathway(s) as a therapeutic approach is feasible. We have previously developed an imaging agent, 99mTc-ethylenedicysteine-glucosamine (99mTc-EC-G) because EC-G mimics phosphorylated N-acetylglucosamine. ECG treatment in DLBCL cells enhances p65 and NFATc1 nuclear translocation. For therapeutic strategies, we developed metallic unlabeled Platinum (Pt) derivatives-EC-G as potential therapeutic agents. Pre-clinical in vitro studies have shown that our two lead compounds, Pt- and Pt-(DACH)-EC-G effectively inhibit lymphoma cell growth and induce apoptosis. These lead compounds can also induce DNA damage in DLBCL cells, through the up-regulation of phosphorylated histone 2AX (pH2AX), leading to the disruption of p65 and NFATc1 binding to DNA. This data importantly demonstrates that the hexosamine biosynthetic pathway is linked to key growth and survival pathways involved in the pathophysiology of DLBCL. Targeting these pathways with novel platinum EC-G compounds as a theranostic approach should lead to new, more effective treatments and diagnosis for DLBCL, particularly for relapsed/refractory DLBCL. Disclosures: Rollo: Cell Point: Employment.

scholarly journals Developmental Variation in Fruit Polyphenol Content and Related Gene Expression of a Red-Fruited versus a White-Fruited Fragaria vesca Genotype

Horticulturae ◽  
2018 ◽  
Vol 4 (4) ◽  
pp. 30
Author(s):  
Sutapa Roy ◽  
Sanjay Singh ◽  
Douglas Archbold
Keyword(s):  
Gene Expression ◽  
Transcription Factors ◽  
Fruit Development ◽  
Biosynthetic Pathway ◽  
Receptor Gene ◽  
Expression Patterns ◽  
Related Gene ◽  
Pathway Gene ◽  
Fruit Development And Ripening ◽  
Flavonoid Biosynthetic Pathway

Two cultivars of F. vesca, red-fruited Baron Solemacher (BS) and white-fruited Pineapple Crush (PC), were studied to compare and contrast the quantitative accumulation of major polyphenols and related biosynthetic pathway gene expression patterns during fruit development and ripening. Developing PC fruit showed higher levels of hydroxycinnamic acids in green stages and a greater accumulation of ellagitannins in ripe fruit in comparison to BS. In addition to anthocyanin, red BS fruit had greater levels of flavan-3-ols when ripe than PC. Expression patterns of key structural genes and transcription factors of the phenylpropanoid/flavonoid biosynthetic pathway, an abscisic acid (ABA) biosynthetic gene, and a putative ABA receptor gene that may regulate the pathway, were also analyzed during fruit development and ripening to determine which genes exhibited differences in expression and when such differences were first evident. Expression of all pathway genes differed between the red BS and white PC at one or more times during development, most notably at ripening when phenylalanine ammonia lyase 1 (PAL1), chalcone synthase (CHS), flavanone-3′-hydroxylase (F3′H), dihydroflavonol 4-reductase (DFR), anthocyanidin synthase (ANS), and UDP:flavonoid-O-glucosyltransferase 1 (UFGT1) were significantly upregulated in the red BS fruit. The transcription factors MYB1 and MYB10 did not differ substantially between red and white fruit except at ripening, when both the putative repressor MYB1 and promoter MYB10 were upregulated in red BS but not white PC fruit. The expression of ABA-related gene 9-cis-epoxycarotenoid dioxygenase 1 (NCED1) was higher in red BS fruit but only in the early green stages of development. Thus, a multigenic effect at several points in the phenylpropanoid/flavonoid biosynthetic pathway due to lack of MYB10 upregulation may have resulted in white PC fruit.

scholarly journals Coregulation of Biosynthetic Genes and Transcription Factors for Aporphine-Type Alkaloid Production in Wounded Lotus Provides Insight into the Biosynthetic Pathway of Nuciferine

ACS Omega ◽  
2018 ◽  
Vol 3 (8) ◽  
pp. 8794-8802 ◽  
Author(s):  
Thitirat Meelaph ◽  
Khwanlada Kobtrakul ◽  
N. Nopchai Chansilpa ◽  
Yuepeng Han ◽  
Dolly Rani ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Biosynthetic Pathway ◽  
Alkaloid Production ◽  
Biosynthetic Genes ◽  
Insight Into

scholarly journals Genetic background of sesquiterpene lactones biosynthesis in Asteraceae. A review

2021 ◽  
Vol 76 (3) ◽  
pp. 49-60
Author(s):  
Magdalena Sozoniuk
Keyword(s):  
Transcription Factors ◽  
Metabolic Engineering ◽  
Secondary Metabolites ◽  
Genetic Background ◽  
Host Plants ◽  
Biosynthetic Pathway ◽  
Sesquiterpene Lactones ◽  
Biosynthesis Pathway ◽  
Heterologous System ◽  
Asteraceae Family

Asteraceae family is a rich source of many sesquiterpene lactones (STLs). These secondary metabolites exhibit multidirectional activity including anti-tumor, anti-inflammatory or antimicrobial, just to name a few. Promising approach of metabolic engineering offers a way of increasing the production of STLs by reconstruction  of  their  biosynthetic  pathway  in  a  heterologous system. Moreover, their production in host plants might be increased through overexpression of biosynthetic genes and/or transcription factors (TFs) positively regulating the pathway. Either of the strategies requires extensive knowledge on the genetic background of STLs biosynthesis pathway. This review summarizes molecular investigations concerning biosynthesis of these medicinally essential metabolites.

scholarly journals Coexpression Analysis Identified PcMYB25 as a Patchoulol Synthase Gene Activator to Enhance Patchouli Alcohol Biosynthesis in Pogostemon Cablin

2021 ◽  
Author(s):  
Xuanxuan Zhou ◽  
Xilin Wang ◽  
Huiling Huang ◽  
Daidi Wu ◽  
Xiaobing Wang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Medicinal Plant ◽  
Biosynthetic Pathway ◽  
Regulatory Mechanism ◽  
Transcriptome Data ◽  
Alcohol Content ◽  
Patchouli Alcohol ◽  
Alcohol Synthesis ◽  
Pogostemon Cablin ◽  
Effective Component

Abstract BackgroundPatchouli alcohol is an effective component of the medicinal plant patchouli. Similar to other secondary metabolites, its synthesis is likely also regulated by transcription factors. Although the biosynthetic pathway of patchouli alcohol has been characterized, the regulatory mechanism of patchouli alcohol biosynthesis has not been fully revealed.ResultsThis study combined the transcriptome data of patchouli leaves treated with different hormones and WGCNA to establish a coexpression network. The modules correlated to patchouli alcohol content were identified, and PcMYB25 played a crucial role in regulating patchouli alcohol biosynthesis. The overexpression of PcMYB25 can promote the expression of patchouli alcohol synthase (PTS), thereby increasing the content of patchouli alcohol.Conclusions This is the first report that MYB25 regulates the secondary metabolism of patchouli. These experimental results lay the foundation for further analysis of the regulatory mechanism of patchouli alcohol synthesis.

scholarly journals Role of ABA in Overcoming Environmental Stress: Sensing, Signaling and Crosstalk

2021 ◽  
Vol 6 (1) ◽  
Author(s):  
Benderradji L ◽  
◽  
Saibi W ◽  
Brini F ◽  
◽  
...  
Keyword(s):  
Transcription Factors ◽  
Stress Tolerance ◽  
Biosynthetic Pathway ◽  
Cis Acting ◽  
Signal Perception ◽  
Physiological Processes ◽  
Aba Signal Transduction ◽  
Stress Sensing ◽  
Aba Receptors

The Abscisic Acid (ABA) is an isoprenoid phytohormone, regulating various physiological processes ranging from stomatal opening to protein storage. Moreover, it provides adaptation to drought, salt and cold stresses acts also as a signaling mediator during the plant’s adaptive response to environmental conditions. In addition, numbers of transcription factors are involved in regulating the expression of ABA responsive genes by interacting with their respective cis-acting elements. ABA signal transduction initiates signal perception by ABA receptors and transfer via downstream proteins, including protein kinases and phosphatases. Hence, for improvement in plants-stress-tolerance capacity, it is necessary to understand the mechanism behind it. On this ground, this article lightens the importance and also the role of ABA signaling with regard to various stresses as well as regulation of ABA biosynthetic pathway along with the transcription factors for stress tolerance.

scholarly journals Overexpression ofAaWRKY1Leads to an Enhanced Content of Artemisinin inArtemisia annua

2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
Weimin Jiang ◽  
Xueqing Fu ◽  
Qifang Pan ◽  
Yueli Tang ◽  
Qian Shen ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Transgenic Plants ◽  
Biosynthetic Pathway ◽  
High Expression ◽  
35S Promoter ◽  
Key Enzymes ◽  
Key Enzyme ◽  
Effective Component ◽  
Artemisinin Biosynthesis ◽  
Insight Into

Artemisinin is an effective component of drugs against malaria. The regulation of artemisinin biosynthesis is at the forefront of artemisinin research. Previous studies showed that AaWRKY1 can regulate the expression ofADS, which is the first key enzyme in artemisinin biosynthetic pathway. In this study,AaWRKY1was cloned, and it activated ADSpro and CYPpro in tobacco using dual-LUC assay. To further study the function of AaWRKY1, pCAMBIA2300-AaWRKY1 construct under 35S promoter was generated. Transgenic plants containingAaWRKY1were obtained, and four independent lines with high expression ofAaWRKY1were analyzed. The expression ofADSandCYP, the key enzymes in artemisinin biosynthetic pathway, was dramatically increased inAaWRKY1-overexpressingA. annuaplants. Furthermore, the artemisinin yield increased significantly inAaWRKY1-overexpressingA. annuaplants. These results showed that AaWRKY1 increased the content of artemisinin by regulating the expression of bothADSandCYP. It provides a new insight into the mechanism of regulation on artemisinin biosynthesis via transcription factors in the future.

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