scholarly journals Biochemical identification techniques and antibiotic susceptibility profile of lipolytic ambiental bacteria from effluents

2019 ◽  
Vol 79 (4) ◽  
pp. 555-565 ◽  
Author(s):  
A. F. G. Rave ◽  
A. V. Kuss ◽  
G. H. S. Peil ◽  
S. R. Ladeira ◽  
J. P. V. Villarreal ◽  
...  
Keyword(s):  
Antibiotic Susceptibility ◽  
Klebsiella Oxytoca ◽  
Effluent Treatment ◽  
Automated System ◽  
Resistant Bacteria ◽  
Biochemical Tests ◽  
Biochemical Identification ◽  
Identification Techniques ◽  
Susceptibility Profiles ◽  
The Impact

Abstract Different methodologies have been developed throughout the years to identify environmental microorganisms to improve bioremediation techniques, determine susceptibility profiles of bacteria in contaminated environments, and reduce the impact of microorganisms in ecosystems. Two methods of bacterial biochemical identification are compared and the susceptibility profile of bacteria, isolated from residential and industrial wastewater, is determined. Twenty-four bacteria were retrieved from the bacteria bank of the Environmental Microbiology Laboratory at the Institute of Biology (IB) of the Universidade Federal de Pelotas, Pelotas, Brazil. Bacteria were identified by conventional biochemical tests and by the VITEK ®2 automated system. Further, the susceptibility profile to antibiotics was also determined by the automated system. Six species of bacteria (Raoutella planticola, K. pneumoniae ssp. pneumoniae , Serratia marcescens, Raoutella sp., E. cloacae and Klebsiella oxytoca) were identified by conventional biochemical tests, while three species of bacteria (K. pneumoniae ssp. pneumoniae, S. marcescens and K. oxytoca ) were identified by VITEK®2 automated system. VITEK ®2 indicated agreement in 19 (79.17%) isolates and difference in five (20.83%) isolates when compared to results from conventional biochemical tests. Further, antibiotic susceptibility profile results showed that all isolates (100%) were resistant to at least one out of the 18 antibiotics tested by VITEK®2. Thus, no multi-resistant bacteria that may be used in effluent treatment systems or in bioremediation processes have been reported. Results indicate VITEK ® 2 automated system as a potential methodology in the determination of susceptibility profile and identification of environmental bacteria.

scholarly journals Antibiotic Susceptibility of Bacteria Isolated from Abattoir Effluent-Impacted Tagangu River, Aliero, Kebbi State, North-Western Nigeria

2019 ◽  
pp. 1-8 ◽  
Author(s):  
B. G. Jega ◽  
O. O. Adebisi ◽  
S. S. Manga
Keyword(s):  
Escherichia Coli ◽  
Pseudomonas Aeruginosa ◽  
Antibiotic Susceptibility ◽  
Microbiological Quality ◽  
Most Probable Number ◽  
Resistant Bacteria ◽  
Proteus Vulgaris ◽  
Probable Number ◽  
Antibiotic Susceptibility Test ◽  
The Impact

This study aimed to evaluate the impact of abattoir effluent on microbiological quality of the receiving Tagangu River and the susceptibility of the isolates to commonly-used antibiotics. The most probable number (MPN) as well as the Kirby-Bauer method of antibiotic susceptibility test were used and demonstrated the total heterotrophic bacteria as well as Escherichia coli O157:H7 numbers in a total of 30 water samples collected over a period of three months at three strategic points of the river. In accordance with CLSI guidelines, four out of eight bacteria (Enterobacter sp., Pseudomonas aeruginosa, Proteus vulgaris and Citrobacter sp.) isolated, demonstrated multiple antibiotic resistance (MAR) against at least three out of septrin, chloramphenicol, amoxicillin, augmentin, gentamicin, tarivid and streptomycin. All the isolates (Escherichia coli, Klebsiella pneumoniae, Enterobacter sp., Pseudomonas aeruginosa, Proteus vulgaris, Citrobacter sp., Serratia marcescens and Aerobacter aerogenes) showed either high or intermediate susceptibility to sparfloxacin, ciprofloxacin and pefloxacin. The findings indicated that the river has been heavily polluted with the effluent discharges and did not meet any of the WHO guidelines for natural water sources fit for irrigation or other domestic purposes. As such, indiscriminate discharge of abattoir effluent could impact on the microbiological quality and promote increased incidence of multiple antibiotic resistant bacteria in a receiving river.

scholarly journals Load and Antibiotic Susceptibility Pattern of Microorganisms in Muscle Foods Sold in Akure, Southwest Nigeria

2019 ◽  
Author(s):  
R.S. Bodunde ◽  
C.O. Ogidi ◽  
B.J. Akinyele
Keyword(s):  
Antibiotic Susceptibility ◽  
Bacterial Count ◽  
Poultry Meat ◽  
Resistant Bacteria ◽  
Susceptibility Pattern ◽  
Biochemical Tests ◽  
Antibiotic Susceptibility Pattern ◽  
Muscle Foods ◽  
First Choice ◽  
Southwest Nigeria

Background: Muscle foods, notably red meat, poultry meat, and fish are the first choice of animal source food with adequate protein for human. The present study was undertaken to analyze the load and antibiotic susceptibility pattern of microorganisms in muscle foods sold in Akure, Southwest Nigeria. Methods: Hundred muscle food samples, including meat and fish were collected from different locations (A-E) of Akure, Nigeria and examined microbiologically using cultural techniques, biochemical tests, and analytical profile index. Antibiotic susceptibility patterns were also determined in isolated microorganisms from muscle foods against different antibiotics. Data were analyzed using SPSS software version 17.0. Results: The highest (p<0.05) total viable bacterial count (8.3×106 CFU/g) were obtained from pork, including with 6.0×105 CFU/g for Staphylococcus and 5.8×105 CFU/g for Salmonella-Shigella. Mackerel collected from location D (Kings market) had the highest (p<0.05) bacterial count of 9.97×105 CFU/g, followed by 8.57×105 CFU/g, and 7.03×105 CFU/g in locations C and E, respectively. Low fungal counts were recorded ranged from 1.0×102 to 1.30×102 spore forming unit/g. The highest (p<0.05) occurrence of 26.50% was observed for Escherichia coli. The isolated microorganisms displayed varying degree of resistance (33.3 to 100%) to commonly used antibiotics. Conclusion: The microorganisms found in muscle foods from Akure, Nigeria could be considered as result of poor hygiene of the retailers or handlers. Also, presence of the multidrug resistant bacteria in muscle foods distributed in this region could pose a serious risk factor to public health. 

scholarly journals Study of Bacterial pathogens in Urinary Tract Infection and their antibiotic resistance profile in a tertiary care hospital of Bangladesh

2017 ◽  
Vol 10 (1) ◽  
pp. 22-26
Author(s):  
Sanjida Khondakar Setu ◽  
Abu Naser Ibne Sattar ◽  
Ahmed Abu Saleh ◽  
Chandan Kumar Roy ◽  
Mushtaque Ahmed ◽  
...  
Keyword(s):  
Urinary Tract ◽  
Antibiotic Susceptibility ◽  
Bacterial Species ◽  
Tertiary Care ◽  
Resistant Bacteria ◽  
Antibiotics Resistance ◽  
Care Hospital ◽  
Biochemical Tests ◽  
Antibiotic Resistance Profile ◽  
Tract Infections

Analyzing antibiotic susceptibility pattern of uropathogens help to overcome the therapeutic difficulties created by the rising antimicrobial resistant bacteria and guides in choosing appropriate antibiotics. Hence, we aimed at evaluating the pathogens causing UTI and study their antibiogram. Midstream urine samples were collected, cultured and appropriate biochemical tests were performed for proper identification of urinary pathogens in BSMMU from January 2013 to December 2013. The most common isolated Gram negative uropathogens were Escherichia coli (63.93%) followed by Klebsiella pneumoniae (17.09%), other bacterial species, named Pseudomonas spp. Enterobacter Acinetobacter spp. Citrobacter spp Proteus spp. Morganella. Among Gram positive organism S. aureus S. saprophyticus S. agalectiae and Enterococci were found. Urinary tract infections were more prevalent in women than men (61.68% vs. 38.32%). High level of sensitivity was found to imipenem, amikacin, nitrofurantoin, ceftriaxone, gentamicin, cefuroxime in most of the isolates. Almost all the test organisms exhibited multiple antibiotic resistances. The high multiple antibiotics resistance identified makes it necessary for antibiotic susceptibility testing to be conducted prior to antibiotic(s) prescription.Bangladesh J Med Microbiol 2016; 10 (01): 22-26

scholarly journals Pseudomonas aeruginosa: Evaluation of Antimicrobial Resistance Patterns in Strains Isolated from Blood Culture in a University Hospital

2020 ◽  
Vol 25 (3) ◽  
pp. 308-315
Author(s):  
Ayşe Hümeyra Taşkın Kafa ◽  
Cem Çelik ◽  
Mürşit Hasbek ◽  
Mustafa Zahir Bakıcı
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Intensive Care ◽  
Intensive Care Units ◽  
Antibiotic Susceptibility ◽  
Empirical Treatment ◽  
University Hospital ◽  
High Rate ◽  
Automated System ◽  
Treatment Protocols ◽  
Susceptibility Profiles

Introduction: The aim of this study was to contribute to the establishment of appropriate empirical treatment protocols by determining antibiotic susceptibility profiles of Pseudomonas aeruginosa strains isolated from bacteremia patients in intensive care units and various clinics. Materials and Methods: Antibiotic susceptibility of a total of 111 P. aeruginosa isolates isolated from the blood of inpatients in intensive care units and other services between January 2014 and July 2018 in Cumhuriyet University, Faculty of Medicine were evaluated retrospectively. In the study, the susceptibility profiles of amikacin, piperacillin-tazobactam, ceftazidime, cefepim, gentamicin, ciprofloxacin, levofloxacin, imipenem and meropenem were investigated using the automated system of Phoenix 100 (Becton Dickinson Co., Sparks, MD, USA). The results were evaluated based on the criteria of the Clinical and Laboratory Standards Institute (CLSI) for 2014 and the European Committee on Antimicrobial Susceptibility Testing (EUCAST) from 2015 onwards. Results: One hundred and eleven P. aeruginosa were isolated from blood samples, 77 from intensive care units and 34 from various services of the hospital. P. aeruginosa strains isolated from cultures have a high rate of resistance against antimicrobial agents. The highest resistance was determined for imipenem with 20.7% and the lowest resistance was determined for amikacin with 1.8%. Piperacillintazobactam, ceftazidim, cefepim, ciprofloxacin, levofloxacin, and meropenem resistance rates were 18%, 17.1%, 17.8%, 18.9%, 13.9%, 19.8% respectively. Multidrug-resistant was found to be 10.8%. This ratio was determined as 13% in intensive care units. Conclusion: Considering the current antibiotic susceptibility profiles while determining empirical treatment protocols is rather important to prevent resistance. In addition, putting forward the bacterial resistance status periodically through this type of studies, to determine the strength of existing drugs and to guide therapy, presents valuable data. Within this context, we propose that the data of our study will contribute to the current literature

scholarly journals Neonatal sepsis in Sana’a city, Yemen: a predominance of Burkholderia cepacia

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Adeeb Salah ◽  
Ibrahim Al-Subol ◽  
Ahmed Hudna ◽  
Ali Alhaj ◽  
Abdulhabib R. Alqubaty ◽  
...  
Keyword(s):  
Multidrug Resistance ◽  
Neonatal Sepsis ◽  
Antibiotic Susceptibility ◽  
Burkholderia Cepacia ◽  
Complete Blood Count ◽  
Late Onset ◽  
Klebsiella Oxytoca ◽  
Multivariable Analysis ◽  
Resistant Bacteria ◽  
Gram Positive

Abstract Background Neonatal sepsis is a global concern with increasing morbidity and mortality. The burden of neonatal sepsis is highest in developing countries, especially in those lacking proper surveillance systems. The causative pathogens and their drug-resistance levels vary between countries with emergence of multidrug resistance organisms. Thus, accurate records on the recent trends of organisms causing neonatal sepsis will provide vital information for appropriate intervention. We aimed to investigate neonatal sepsis, identify its associated factors and causative pathogens and to assess the antibiotic susceptibility patterns in Sana’a city, Yemen. Methods A cross-sectional study was conducted on neonates admitted to intensive care units of six hospitals in Sana’a city, Yemen, in the period from January 15, to March 30, 2020. Natal and prenatal medical data were collected using well-structured questionnaire. Neonates were subjected to sepsis work-up including blood culture, complete blood count and C-reactive protein. Organisms were identified by Gram staining and analyzed by the VITEK II system for bacterial bio-typing and antibiotic susceptibility testing. Findings Of the 199-neonates with suspected neonatal sepsis, 154 (77.38%) had culture-proven sepsis. Early-onset neonatal sepsis (EOS) was higher (50.25%; 100/199) than late-onset neonatal sepsis (LOS) (27.13%; 54/199). Multivariable analysis identified vaginal delivery as an independent risk factor for neonatal sepsis p = 0.005. Majority of isolated bacteria (74.39%) were gram-negative with Burkholderia cepacia (39%) and Klebsiella oxytoca (13%) being the most common pathogens of EOS and LOS. The most common gram-positive pathogens were Staphylococcus haemolyticus (9.1%) and Staphylococcus epidermidis (7.1%). B. cepacia showed multidrug resistance except for cefepime. All Klebsiella species isolates (100%) and most Pantoea species (93%) were ESBL and carbapenemase positive. All Escherichia coli and Acinetobacter baumannii isolates were ESBL positive. A significant number of gram-positive bacteria showed resistance to vancomycin. Conclusion The study findings show a high proportion of neonatal sepsis among neonates admitted to hospitals in Sana’a city with antibiotic-resistant B. cepacia being the single most common pathogen causing EOS and LOS. Findings also emphasize the emerging threat of multidrug-resistant bacteria in neonatal units and will help develop evidence-based management of neonatal sepsis in Yemen.

Antibiotic susceptibility profile of extended spectrum β-lactamase producing Escherichia coli, Klebsiella pneumoniae and Klebsiella oxytoca from Urinary tract infections

2021 ◽  
pp. 4425-4428
Author(s):  
M. Sharmal Kumar ◽  
Arunagirinathan N. ◽  
Ravikumar M.
Keyword(s):  
Escherichia Coli ◽  
Urinary Tract ◽  
Urinary Tract Infections ◽  
Antibiotic Susceptibility ◽  
Klebsiella Oxytoca ◽  
Bacterial Pathogen ◽  
Resistant Bacteria ◽  
Extended Spectrum ◽  
High Level ◽  
Tract Infections

The aim of this study was to analyze the extended spectrum β-lactamases (ESBLs) production and antibiotic susceptibility profile of urinary tract infected bacterial pathogens such as Escherichia coli and Klebsiella spp. A total of 143 Gram-negative bacteria were isolated from people suffering from urinary tract infections (UTIs) were included in this study. Among them, Escherichia coli (75%) were the predominantly isolated bacterial pathogen followed by Klebsiella oxytoca (14.6%) and K. pneumoniae (10.4%). Approximately 65% (n=93) of isolates were positive for ESBL production and E.coli was found to be the highest ESBL producer (67.6%) followed by K. oxytoca (57.1%) and K. pneumoniae (53.3%). E. coli showed high level of 86.1% resistance to cefotaxime and cefuroxime and 100% sensitive to imipenem and meropenem, whereas, K. oxytoca showed high level of 90.5% resistance to cefuroxime and 100% sensitive to amikacin, imipenem and meropenem. Similarly, K. pneumoniae showed high level of 73.3% resistance to nitrofurantoin and 93.3% sensitive to imipenem. This study reveals that majority of UTIs caused bacteria are ESBL producing multidrug-resistant bacteria and showing broad spectrum antibiotic resistance profile.

scholarly journals Occurrence of Plasmid- and Chromosome-Carried mcr-1 in Waterborne Enterobacteriaceae in China

2017 ◽  
Vol 61 (8) ◽  
Author(s):  
Hong-Wei Zhou ◽  
Ting Zhang ◽  
Ji-Hua Ma ◽  
Ying Fang ◽  
Han-Yu Wang ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Klebsiella Oxytoca ◽  
Culture Method ◽  
Environmental Water ◽  
Broth Culture ◽  
Resistant Bacteria ◽  
Enrichment Broth ◽  
Content Type ◽  
Sampling Locations ◽  
Susceptibility Profiles

ABSTRACT The aim of this study was to investigate the prevalence of the polymyxin resistance gene mcr-1 in Enterobacteriaceae from environmental water sources in Hangzhou, China. Colistin-resistant bacteria were isolated from environmental water samples using an enrichment broth culture method, were screened for mcr-1, and then were analyzed for the location and transferability of mcr-1. Isolates positive for mcr-1 were further examined to determine their susceptibility profiles and were screened for the presence of additional resistance genes. Twenty-three mcr-1-positive isolates (16 Escherichia coli, two Citrobacter freundii, two Klebsiella oxytoca, two Citrobacter braakii, and one Enterobacter cloacae) were isolated from 7/9 sampling locations; of those, eight mcr-1-positive isolates also contained β-lactamase-resistance genes, eight contained qnrS, and 10 contained oqx. No mcr-2-positive isolates were identified. The majority of isolates demonstrated a low to moderate level of colistin resistance. Transconjugation was successfully conducted from 14 of the 23 mcr-1-positive isolates, and mcr-1 was identified on plasmids ranging from 60 to 220 kb in these isolates. Conjugation and hybridization experiments revealed that mcr-1 was chromosome-borne in only three isolates. Pulsed-field gel electrophoresis showed that the majority of E. coli isolates belonged to different clonal lineages. Multilocus sequence typing analysis revealed that sequence type 10 (ST10) was the most prevalent, followed by ST181 and ST206. This study demonstrates the utility of enrichment broth culture for identifying environmental mcr-1-positive isolates. Furthermore, it highlights the importance of responsible agriculture and clinical use of polymyxins to prevent further widespread dissemination of polymyxin-resistant pathogens.

scholarly journals Antimicrobial Susceptibility Profiles and Resistance Genes in Genus Aeromonas spp. Isolated from the Environment and Rainbow Trout of Two Fish Farms in France

2021 ◽  
Vol 9 (6) ◽  
pp. 1201
Author(s):  
Niki Hayatgheib ◽  
Ségolène Calvez ◽  
Catherine Fournel ◽  
Lionel Pineau ◽  
Hervé Pouliquen ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Antibiotic Use ◽  
Resistant Bacteria ◽  
Aquatic Environments ◽  
Fish Farms ◽  
Antibiotic Resistant ◽  
Resistant Strains ◽  
Trout Farms ◽  
Susceptibility Profiles ◽  
The Impact

This study presents the occurrence and abundance of Aeromonas antibiotic-resistant bacteria (ARB) and genes (ARGs) isolated from water, biofilm and fish in two commercial trout farms before and one week after flumequine treatment. Wild (WT) and non-wild (NWT) strains were determined for quinolones (flumequine, oxolinic acid and enrofloxacin), oxytetracycline (OXY), florfenicol (FFN), trimethoprim-sulfamethoxazole (TMP) and colistin (COL), and pMAR (presumptive multi-resistant) strains were classified. Forty-four ARGs for the mentioned antibiotics, β-lactams and multi-resistance were quantified for 211 isolates. BlaSHV-01, mexF and tetE were the dominant ARGs. A greater occurrence and abundance of tetA2, sul3, floR1, blaSHV-01 and mexF were observed for NWT compared to WT. The occurrence of pMAR and NWT Aeromonas for quinolones, OXY, FFN, TMP, COL and ARGs depended on the Aeromonas origin, antibiotic use and the presence of upstream activities. Our results revealed the impact of a flumequine treatment on Aeromonas present on a fish farm through an increase in NWT and pMAR strains. The link between fish and their environment was shown by the detection of identical ARB and ARGs in the two types of samples. There appears to be a high risk of resistance genes developing and spreading in aquatic environments.

scholarly journals Hospitalization and colonization by methicillin-resistant Staphylococcus in the surgical department in 03 health facilities of the Ndé division, west-Cameroon

2020 ◽  
Author(s):  
William Lelorel Nankam Nguekap ◽  
Pierre René Fotsing Kwetche ◽  
Gildas Boris Tazemda-Kuitsouc ◽  
Golda Joyce Chouna Djeutsa ◽  
Jean Michel Tekam
Keyword(s):  
Antibiotic Resistance ◽  
Antibiotic Therapy ◽  
Antibiotic Susceptibility ◽  
Health Facilities ◽  
Resistant Bacteria ◽  
Methicillin Resistant ◽  
Surgical Department ◽  
Nasal Swabs ◽  
Susceptibility Tests ◽  
The Impact

Abstract Background: Commensal flora colonization during hospitalization by bacteria is the first step for a nosocomial infections while antibiotic resistance reduces therapeutic options. In aim to control this phenomenon, we initiated this study to describe the impact of hospitalization on colonization by methicillin-resistant Staphylococcus in the surgical department in 03 health facilities of the Ndé division, west-Cameroon. Methods: This quasi-experimental study was carried out on patients admitted for surgery in 03 health facilities of the Ndé division, west-Cameroon (District Hospital of Bangangté, Protestant Hospital of Bangwa and Cliniques Universitaires des Montagnes). After obtaining ethical clearance and authorizations, nasal swabs were performed at admission and discharge, with the aim of isolating bacteria and performing their antibiotic susceptibility tests. Information on each participant's antibiotic therapy was recorded. Laboratory investigations were carried out according to standard protocols (CASFM, 2019). Results: The most commonly used antibiotics were β-lactam antibiotics. Of the 52 patients who agreed to participate in the study, 104 nasal swabs were performed. From the analysis, 110 (57 at admission versus 53 at discharge) Staphylococcus isolates were obtained. Overall, susceptibility testing showed that antibiotic resistance rates were higher at discharge than at admission; with significant differences between the susceptibility profiles obtained at admission and discharge for β-lactam antibiotics and not significant for fluoroquinolones and aminoglycosides. The nasal flora of 13 (25%) patients was colonized with methicillin-resistant Staphylococcus at admission versus 39 (75%) at discharge and 14 (24.56%) of the isolates obtained at admission were methicillin-resistant versus 37 (69.81%) at discharge. Of the variables studied, hospital stay remained the only variable significantly (p=0.0080) associated with colonization by methicillin-resistant Staphylococcus.Conclusion: This work must be considered as an alarm bell regarding the role of health structures in the colonization and spread of multi-resistant bacteria in Ndé division. As a result, further investigations aimed at investigating the factors favouring this phenomenon should be carried out with an approach similar to that of the ONE HEALTH concept. Pending these investigations, we recommend strict compliance with hygiene rules, personalized antibiotic therapy (performing antibiotic susceptibility tests) and an updated antibiotic prophylaxis and probabilistic antibiotic therapy according to the studies carried out in the locality.

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