Isolation and Identification of Fungi from Clinical Samples of Diabetic Patients and Studying the Anti-Fungal Activity of Some Natural Oils on Isolated Fungi

Isolation of fungi was performed from February to July, 2019. One hundred clinical specimens were collected from King Abdullah Hospital (KAH) Bisha, Saudi Arabia. Samples were collected from twenty patients of different ages (30 - 70 years old) ten males and ten females. The samples were collected from patients with the two types of diabetics. Specimens included blood, hair, nail, oral swabs and skin. Specimens were inoculated on Sabourauds Dextrose agar containing chloramphenicol. Thirteen fungal species were isolated and identified. The isolated species were: Aspergillus flavus, A. niger, A. terrus, A. nidulans, A. fumigatus, Candida albicans, C. krusei, C. parapsilosis, C. Tropicalis, Curvularia lunata, Fusarium solani, Penicillium marneffei and Saccharomyces cerevisiae. Identification of molds was carried out morphologically and microscopically using available methods and books of identification, while identification of yeasts was carried out using API system. C. albicans recorded the highest isolated number where 31 colonies were isolated from 18 patients, representing relative density of 22.5%. (R. D.: is the number of a certain fungal species divided by the total number of fungi). Other isolated fungal species recorded relative density less than 16 %. The most common isolated fungus Candida albicans was molecularly identified using the 5.8S and flanking ITS regions. The antifungal activity of some natural essential oils (cinnamon, thyme, coconut, almond and clove) was assayed against isolated fungi using disk diffusion method. The used concentration was 5 µl / plate. The MIC values were also determined using different oil concentrations (1, 2.5, 5, 10, 20 and 40 µl / disc).

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Antifungal Susceptibility and Biofilm Production of Candida spp. Isolated from Clinical Samples

International Journal of Microbiology ◽

10.1155/2018/7495218 ◽

2018 ◽

Vol 2018 ◽

pp. 1-5 ◽

Cited By ~ 10

Author(s):

Munmun B. Marak ◽

Biranthabail Dhanashree

Keyword(s):

Antifungal Susceptibility ◽

Clinical Information ◽

Antibiotic Use ◽

Microtiter Plate ◽

Vaginal Swab ◽

Diffusion Method ◽

Clinical Samples ◽

Candida Spp ◽

Disk Diffusion Method ◽

Biofilm Production

Objective. The study aims to speciate clinical Candida isolates and detect their biofilm-forming ability and antifungal resistance. Methods. All the Candida spp. isolated from different clinical samples like pus, urine, blood, and body fluid were included in the study. Biofilm production was tested by the microtiter plate method. Antifungal susceptibility was studied by the disk diffusion method. Patient’s demographic details such as age, sex, and clinical information were collected. Presence of other risk factors such as diabetes mellitus, history of antibiotic use, and any urinary tract instrumentations was also recorded. Results. Among 90 Candida species isolated, most predominant species was found to be C. albicans (45.5%) followed by C. tropicalis (28.88%), C. krusei (20%), C. glabrata (3.33%), and C. parapsilosis (2.22%). Candida spp. were isolated from urine (43%), BAL/sputum (18.88%), high vaginal swab (8.88%), suction tips (7.77%), blood and wound swabs (6.66%), pus (3.33%), bile aspirate (2.22%), and deep tissue (1.11%). A larger number of females were affected than males, and the age group of 51 to 60 years was more susceptible to candidiasis. A higher number of C. albicans isolates produced biofilm followed by C. parapsilosis, C. tropicalis, and C. krusei. However, C. glabrata showed no biofilm production in our study. All Candida isolates were 100% sensitive to amphotericin B. Voriconazole was the next effective drug with 81.11% susceptibility. 24.44% of strains were resistant to fluconazole. Conclusion. Speciation of Candida isolates, detection of ability to form the biofilm, and monitoring of antifungal susceptibility testing are necessary for appropriate treatment.

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ANTIBACTERIAL AND ANTIFUNGAL ACTIVITY OF SILVER NANOPARTICLES AGAINST NEISSERIA GONORRHOEAE AND CANDIDA ALBICANS

International Journal of Research -GRANTHAALAYAH ◽

10.29121/granthaalayah.v8.i6.2020.461 ◽

2020 ◽

Vol 8 (6) ◽

pp. 179-187

Author(s):

Titik Taufikurohmah ◽

Tasha Anandya Tantyani

Keyword(s):

Antibacterial Activity ◽

Candida Albicans ◽

Antifungal Activity ◽

Neisseria Gonorrhoeae ◽

Diffusion Method ◽

Antibacterial And Antifungal Activity ◽

Disk Diffusion Method ◽

Fungal Inhibition ◽

Inhibition Response ◽

Antibacterial And Antifungal

This Research on the antibacterial and antifungal activity of nanosilver against Neisseria gonorrhoeae and Candida albincas fungi has been carried out. The purpose of this study was to determine antibacterial activity of nanosilver against Neisseria gonorrhoeae and antifungal activity against Candida albincas. Synthesis Nanosilver uses bottom up method and characterized using UV-Vis Spectrophotometer. Nanosliver concentrations used were 30, 40, 50, and 60 ppm. Antibacterial and antifungal activity tests using disk diffusion method. Observations obtained in form of the presence or absence of clear zones formed around paper discs indicate the inhibition of nanosilver on microbial growth. The results of testing the antifungal activity of Candida albicans on nanosilver with concentrations of 30, 40, 50 and 60 ppm resulted in clear zones of 9.73 nm, 11.46 nm, 11.93 nm, and 13 nm with fungal inhibition response categories is medium and strong. The results antibacterial activity test of Neisseria gonorrhoeae on nanosilver with concentrations of 30, 40, 50 and 60 ppm did not show any clear zone around the disc, it showed that nanosilver in this study did not have antibacterial activity against Neisseria gonorrhoeae.

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Prevalence, Risk Factors, and Antibiogram of Nontyphoidal Salmonella from Beef in Ambo and Holeta Towns, Oromia Region, Ethiopia

International Journal of Microbiology ◽

10.1155/2021/6626373 ◽

2021 ◽

Vol 2021 ◽

pp. 1-13

Author(s):

Endrias Zewdu Gebremedhin ◽

Gezahegn Tafesse Soboka ◽

Bizunesh Mideksa Borana ◽

Lencho Megersa Marami ◽

Edilu Jorga Sarba ◽

...

Keyword(s):

Risk Factors ◽

Food Safety ◽

Antimicrobial Susceptibility ◽

Multidrug Resistant ◽

Animal Origin ◽

Diffusion Method ◽

Isolation And Identification ◽

Disk Diffusion Method ◽

Cross Sectional ◽

Food Of Animal Origin

Background. Salmonella has been recognized as a major cause of food-borne illness associated with the consumption of food of animal origin. The present cross-sectional study was conducted from December 2017 to May 2018 in Ambo and Holeta towns to assess the prevalence, risk factors, and antimicrobial susceptibility patterns of nontyphoidal Salmonella isolates from raw beef samples from abattoirs, butchers, and restaurants in Ambo and Holeta towns, Oromia region, Ethiopia. Methods. A total of 354 beef samples were collected from abattoirs, butchers, and restaurants. Salmonella isolation and identification were carried out using standard bacteriological methods recommended by the International Organization for Standardization. Antimicrobial susceptibility testing was performed using the disk diffusion method. Besides, a structured questionnaire was used to collect sociodemographic data and potential risk factors for contamination of meat. Chi-square tests and logistic regression were used for data analyses. Results. Of the total 354 meat samples examined, 20 (5.7%, 95% confidence interval (CI): 3.5–8.6) were positive for Salmonella. Two serotypes belonging to S. typhimurium (11 isolates) and I:4,5,12: i:- (9 isolates) were identified. The Salmonella detection rate in abattoirs, butchers, and restaurants was 4.2% (5/118), 8.5% (10/118), and 4.2% (5/118), respectively. The antimicrobial susceptibility test showed that 40%, 30%, and 20% of the Salmonella isolates were resistant to azithromycin, amoxicillin, and ceftriaxone, respectively. The odds of Salmonella isolation when meat handlers are illiterate were 7.8 times higher than those when they are educated to the level of secondary and above ( P = 0.032 ). Similarly, the likelihood of Salmonella isolation was 6.3 and 7.6 times higher among workers of butcher and restaurants, respectively, who had no training ( P = 0.003 ) and no knowledge ( P = 0.010 ) on food safety and hygiene. Conclusions. The study showed widespread multidrug-resistant Salmonella isolates in the study areas. Therefore, raw meat consumption and indiscriminate use of antimicrobial drugs should be discouraged. Provision of food safety education for meat handlers and further surveillance of antimicrobial-resistant isolates are suggested.

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Bacterial Contamination Associated with Retail Chicken Carcasses in Osogbo, Nigeria

Journal of Health and Allied Sciences NU ◽

10.1055/s-0040-1703934 ◽

2015 ◽

Vol 05 (04) ◽

pp. 045-050

Author(s):

Adesiji Yemisi Olukemi ◽

Igbinigie Mavis Osas ◽

Olaitan Janet Olubukola ◽

Ogah Ikhevha Jeremiah

Keyword(s):

Diffusion Method ◽

Isolation And Identification ◽

Disk Diffusion Method ◽

E Coli ◽

Poultry Products ◽

Bacterial Contaminants ◽

Food Borne ◽

Chicken Carcass ◽

Hygiene Measures ◽

Food Borne Illness

Abstract Background: Worldwide, food borne illness is often associated with consumption of meat and poultry products sold at retail markets. A study on the bacteriological status of chicken carcass in Osogbo, Nigeria, was carried out to determine the prevalence of Arcobacter species, Escherichia coli and Staphylococcus aureus in chicken carcasses. Methodology: A total of 100 samples of chicken carcasses were collected from two major processing points in Osogbo, Nigeria. The samples were analysed for the presence of bacterial contaminants using standard microbiological isolation and identification procedures, with antimicrobial susceptibility test performed using the disk diffusion method. Result: Of hundred chicken carcasses sampled, 38% were positive for Arcobacter species and E. coli while 60% accounted for S. aureus isolates. Ninety percent of Arcobacter spp isolates were susceptible to ciprofloxacin, 85% to gentamicin, and pefloxacin, 70% to chloramphenicol and 90% were resistant to amoxicillin, 85% to augumentin and 80% to streptomycin. Hundred percent of E. coli isolates were susceptible to ciprofloxacin, pefloxacin, 95% to gentamicin and 100% were resistant to streptomycin, 85 % resistant to amoxicillin, augumentin, while 100% of S. aureus isolates were susceptible to trimethoprim sulphamethoxazole, 90% susceptible to gentamicin, 80% to streptomycin and 100% of the S.aureus isolates were resistant to ampliclox. Conclusion: The bacteriological status of chicken carcass revealed high contamination with Arcobacter, E coli and S. aureus with varying degree of antibiotic resistance therefore, improvement in meat processing procedures and strict hygiene measures towards reduction of these pathogens in food products should be encouraged.

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Occurrence and antimicrobial susceptibility ofbacterial agents of canine pyometra

Indian Journal of Animal Research ◽

10.18805/ijar.v0iof.6830 ◽

2016 ◽

Author(s):

Afrim Hamidi ◽

Driton Sylejmani ◽

Avni Robaj

Keyword(s):

Antimicrobial Susceptibility ◽

Acquired Resistance ◽

Clinical Signs ◽

Diffusion Method ◽

Isolation And Identification ◽

Small Female ◽

Disk Diffusion Method ◽

Staphylococcus Intermedius ◽

Identification Of Bacteria

The aim of this study was to investigate the occurrence of pyometra in bitches and isolation of bacteria involved and determination of their antimicrobial susceptibility. For this purpose from March 2013 to February 2015, 230 bitches of different breeds and ages have been examined. Diagnosis was based on anamnesis, clinical signs, hematology, radiography and ultrasound. The isolation and identification of bacteria in pyometra was carried out using ISO-methods and the antimicrobial susceptibility of bacterial isolates using the disk diffusion method. Canine pyometra was found more in bitches between 9-12 years old 10 cases (52.63%), and the most common dog affected breeds were small female dogs breed. The most common isolated pathogens from canine pyometra were; Escherichia coli (63.1%), Streptococcus pyogenes., (15.8%), Staphylococcus intermedius., (10.5%) and, Pseudomonas aeruginosa., (5.3%). Regarding AMR (antimicrobial resistance) Penicilin G and Ampicillin showed a very high resistance, indicating for acquired resistance due to improper und uncontrolled use.

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Molecular Serotyping and Resistance of Clinical Strains of Haemophilus (Glaesserella) Parasuis in Chinese Pig Farms From 2016 to 2018.

10.21203/rs.3.rs-149652/v1 ◽

2021 ◽

Author(s):

Jinjin Liu ◽

Long Guo ◽

Yi Yuan ◽

Wenbo Song ◽

Qianqian Li ◽

...

Keyword(s):

Large Scale ◽

Clinical Symptoms ◽

Inhibitory Effect ◽

Diffusion Method ◽

Economic Losses ◽

Clinical Samples ◽

Peptide Antibiotics ◽

Disk Diffusion Method ◽

Positive Role ◽

Pig Farms

Abstract Haemophilus parasuis (H. parasuis) is the etiological agent of Glässer's disease and brings great economic losses to the pig industry. The goal of our research is to reveal the serotypes of H. parasuis isolated from large-scale pig farms in China from 2016 to 2018. From 2016 to 2018, 8153 H. parasuis field strains were isolated from 14610 clinical samples of sick pigs with clinical symptoms from 26 provinces and cities of China. Among them, 1386 strains were identified as H. parasuis by PCR, and the isolation rate was 9.49%. Through multiplex PCR, we showed that type 5/12 and type 4 strains had the highest separation rate, followed by type 13 and type 14 strains. Using disk diffusion method, we found cephalosporin antibiotics and peptide antibiotics all had good inhibitory effect on H. parasuis. Our conclusion may play a positive role in the prevention and treatment of H. parasuis.

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Characterization of Vibrio parahaemolyticus strains isolated in Chile in 2005 and in 2007

The Journal of Infection in Developing Countries ◽

10.3855/jidc.1228 ◽

2010 ◽

Vol 5 (07) ◽

pp. 502-510 ◽

Cited By ~ 12

Author(s):

Priscila Dauros ◽

Helia Bello ◽

Mariana Domínguez ◽

Juan C. Hormazábal ◽

Gerardo González

Keyword(s):

Antibiotic Resistance ◽

Antibiotic Resistance Genes ◽

Diffusion Method ◽

Clinical Samples ◽

Disk Diffusion Method ◽

Integrase Gene ◽

Class 1 ◽

Single Clone ◽

Almost All ◽

Pfge Profiles

Introduction: Vibrio (V.) parahaemolyticus has endemically established in Chilean sea shores, causing outbreaks every year, with an important number of cases. In order to know the genetic relationship, genotype dominance and antibiotic resistance of isolates obtained from two outbreaks, this study characterized 110 strains isolated from environmental and clinical samples in years 2005 and 2007 in Chile. Methodology: Genotyping was performed by determination of PFGE profiles, and pandemic group and integrons were screened by PCR. Antimicrobial susceptibility was studied by the disk diffusion method. Results: High antibiotic susceptibility frequency was found, mainly among 2007 isolates, except to ampicillin, cephalothin, cefoxitin, cefpodoxime, amikacin, streptomycin and kanamycin. Strains belonging to the pandemic group in clinical isolates account for 88% in 2005, decreasing to 66% in 2007 and among environmental isolates were detected in 20% of the strains from 2005, rising to 36% in 2007. In 2005, nine different PFGE profiles were identified, with 78% of the strains corresponding to a single clone. In 2007, sixteen different PFGE profiles were detected, with 61% of the strains included into a sole clone. The same clone was prevalent in both years. None of class 1, 2, 3 and SXT integrases genes was detected; however, the superintegron integrase gene (intIA) was present in almost all strains. Conclusions: These results suggest the persistence and dominance of a unique PFGE clone of V. parahaemolyticus during 2005 and 2007, and the absence of genetic elements that capture antibiotic resistance genes described in other species of Vibrio.

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Investigation of Antibiotic Resistance and Biofilm Formation in Clinical Isolates of Klebsiella pneumoniae

International Journal of Microbiology ◽

10.1155/2021/5573388 ◽

2021 ◽

Vol 2021 ◽

pp. 1-6

Author(s):

Kiana Karimi ◽

Omid Zarei ◽

Parinaz Sedighi ◽

Mohammad Taheri ◽

Amin Doosti-Irani ◽

...

Keyword(s):

Antibiotic Resistance ◽

Klebsiella Pneumoniae ◽

Biofilm Formation ◽

Diffusion Method ◽

Clinical Samples ◽

Resistance Pattern ◽

Chi Square ◽

Disk Diffusion Method ◽

High Level ◽

Tract Infections

Aim. Klebsiella pneumoniae (K. pneumoniae) is an encapsulated Gram-negative bacterium that can lead to 14–20% of nosocomial infections. The ability of biofilm formation in this bacterium decreases the host immune response and antibiotic efficacy. This may impose a huge impact on patients and healthcare settings. This study aimed to evaluate the antibiotic resistance pattern and biofilm formation in K. pneumoniae strains isolated from two major Hamadan hospitals, west of Iran. Methods. A total of 83 K. pneumoniae strains were isolated from clinical samples of patients in different wards of Hamadan hospitals from September 2018 to March 2019. Determination of antimicrobial susceptibility was performed using the disk diffusion method. Biofilm formation was evaluated by the crystal violet method. Data were analyzed by the SPSS software and chi-square test. Results. The results showed that clinical samples included 18 urinary tract samples (22%), 6 wound samples (7%), 6 blood samples (7%), 17 tracheal tube aspiration samples (20%), 32 throat cultures (38%), 2 sputum samples (2.5%), and 2 abscess drain cultures (2.5%). High-level resistance to cefotaxime was detected in 92%, and all of isolates were susceptible to colistin. Biofilm formation was seen in 62 (75%) isolates. Strong biofilm formation was observed in 17 (20%) strains. A significant correlation was seen between biofilm formation and antibiotic resistance ( P value <0.05). Conclusion. Our findings emphasize the need for proper diagnosis, control, and treatment of infections caused by K. pneumoniae especially in respiratory tract infections due to the strong biofilm formation and high antibiotic resistance in these strains.

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Antimicrobial Resistance Pattern of Extensively Drug Resistant Carbapenemase Producing Enterobacteriaceae

Bangladesh Journal of Medical Microbiology ◽

10.3329/bjmm.v13i2.51786 ◽

2019 ◽

Vol 13 (2) ◽

pp. 7-10

Author(s):

Fatima Afroz ◽

Shaheda Anwar ◽

Mashrura Quraishi ◽

GM Mohiuddin ◽

SM Ali Ahmed ◽

...

Keyword(s):

Bacterial Infections ◽

Multidrug Resistant ◽

Diffusion Method ◽

Clinical Samples ◽

Resistance Pattern ◽

Drug Resistant ◽

Disk Diffusion Method ◽

Cross Sectional ◽

Extensively Drug Resistant ◽

Broth Microdilution Method

Carbapenems, often agents of last resort for multidrug resistant bacterial infections are now threatened by widespread dissemination of carbapenem-resistant Enterobacteriaceae (CRE). Production of carbapenemases remain the most clinically important mechanism of carbapenem resistance in Enterobacteriaceae. The objective of this study was to determine the antibiogram pattern of carbapenemase producing Enterobacteriaceae. A cross sectional study was conducted at department of Microbiology and Immunology, BSMMU from September 2018 to August 2019. A total of 145 CRE isolates from different clinical samples were studied.Antimicrobial susceptibility was examinedby disk diffusion method and MIC of colistin by broth microdilution method. Resistant carbapenemase genes NDM and OXA-48 were identified by polymerase chain reaction. Out of 145 CRE isolates, 104 were NDM, 73 were OXA-48and 34 isolates were both NDM and OXA-48 co-producers. All the NDM and OXA-48 carbapenemase producing isolates were 100% resistant to meropenem, imipenem, ertapenem, ceftriaxone, ceftazidime, cefotaxime, cefuroxime, amoxicillin + clavulanic acid and piperacillin + tazobactam. Resistance rates of reserved antimicrobials to treat CRE isolates were also alarming. Thirty seven percent, 9.6% and 5.5 % of OXA-48 carbapenemase producers and 26.0%, 10.6% and 2.9% of NDM carbapenemase producers were resistant to colistin, polymyxin B and tigecycline respectively.Among the carbapenemase producing isolates, 16.6% (24) were multidrug resistant (MDR), 82.1% (119) were extensively drug resistant (XDR) and 1.3% (2) isolates were pan drug resistantwhich highlights the emerging therapeutic challenge for these superbugs. Bangladesh J Med Microbiol 2019; 13 (2): 7-10

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Prevalence, seasonality, and antimicrobial resistance of thermotolerant Campylobacter isolated from broiler farms and slaughterhouses in East Algeria

Veterinary World ◽

10.14202/vetworld.2020.1221-1228 ◽

2020 ◽

Vol 13 (6) ◽

pp. 1221-1228

Author(s):

Mohamed Baali ◽

Mohamed Lounis ◽

Hanan Laidouci Al Amir ◽

Ammar Ayachi ◽

Ahcen Hakem ◽

...

Keyword(s):

Clavulanic Acid ◽

Antimicrobial Agents ◽

Health Hazard ◽

Control Measures ◽

Diffusion Method ◽

Contamination Rate ◽

Isolation And Identification ◽

Initial Finding ◽

Disk Diffusion Method ◽

Amoxicillin Clavulanic Acid

Aim: The current study was carried out to determine the prevalence, seasonality, and antimicrobial profile of thermotolerant Campylobacter isolated from broiler chickens in Batna, East Algeria, from June 2016 to June 2018. Materials and Methods: A total of 960 samples, including 480 cloacal swabs, 240 cecal contents, and 240 neck skin samples collected from 6 poultry farms and 12 slaughterhouses, were included in this study. After isolation and identification, susceptibility to seven antimicrobial agents was tested by the disk diffusion method. The seasonality of Campylobacter infection at broiler farms was statistically analyzed. Results: The data showed that 65%, 55%, and 70% of the cloacal swab, neck skin, and cecal content samples were contaminated with thermotolerant Campylobacter strains, respectively (p<0.05). Among the isolated campylobacteria, Campylobacter jejuni was the predominant species (73.5%). Sampling season exhibited a significant impact on the prevalence of Campylobacter (p<0.01), with peak occurrence in summer. All of the isolates were susceptible to gentamicin and resistant to ampicillin and amoxicillin/clavulanic acid, while 83.3% of them were resistant to erythromycin. Interestingly, 16 different resistance profiles were noted, with the combination of "ampicillin, amoxicillin/clavulanic acid, chloramphenicol, erythromycin, and tetracycline" being the most common, identified in 20.7% of isolated strains. Conclusion: This study demonstrates the presence of a high contamination rate of multidrug-resistant Campylobacter in farms and slaughterhouses in East Algeria. These findings underscore the need to apply strict control measures to avoid any associated public health hazard among Algerian consumers. This initial finding of the contamination of poultry with this zoonotic pathogen in East Algeria suggests the value of periodic comprehensive evaluation of associated disease in poultry as well as in humans in this region.

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