PSXI-2 Genome-Wide association study and possibilities for genomic selection of Simmental cattle breed in Russia

2021 ◽  
Vol 99 (Supplement_3) ◽  
pp. 246-247
Author(s):  
Larisa P Ignatieva ◽  
Alexander A Sermyagin ◽  
Sergey Nikitin ◽  
Alexander Conte ◽  
Elena Naryshkina ◽  
...  
Keyword(s):  
Genomic Selection ◽  
Milk Production ◽  
Milk Yield ◽  
Genomic Prediction ◽  
Milk Fat ◽  
Reference Group ◽  
Fatty Acid Content ◽  
Significant Snps ◽  
Simmental Cattle ◽  
Fertility Traits

Abstract The implementation of genomic selection methods in dairy cattle is limited due to the size of the reference population, quantitative traits variability and genetic structure of population. The Simmental cattle and related breeds in Russia occupy the third place by registered cows - 87.6 thousand, and are bred from the western borders of central Russia to Yakutia in Siberia. The study aim was to search for QTL using as a pseudo phenotype sires’ EBV to validate the effectiveness of genomic assessments for Simmental cattle in Russia. Reference group based on 358 bulls from different Russian regional populations was formed. By the dataset of 61976 cows, using BLUP Animal Model approach, animals’ EBV were calculated. The GBLUP procedure was used to get genomic prediction (DGV). Genotype quality control selected of 37143 SNPs. GWAS analysis was perform by Plink 1.90. To prove DGV we used verification procedure to comparison with EBV in training population dataset that showed slightly moderate repeatability for 305-milk yield - 37.6%, milk fat - 39.8% and milk protein - 43.6%. Significant SNPs associated with bulls EBV according to milk production and fertility traits revealed for: 305-milk yield on BTA5 (ACO2,p=0.0005), BTA29 (NAP1L4, P = 0.00004; KCNQ1, P = 0.00004); fat percentage on BTA3 (ROR1, P = 0.0003), BTA14 (CRH, P = 0.0003; TRIM55, P = 0.0003; DNAJC5B, P = 0.0003; REX2, P = 0.0020; ZFHX4, P = 0.0020) BTA17 (TLR2, P = 0.0011); days open on BTA1 (TNIK, P = 0.0007; FNDC3B, P = 0.0007), BTA21 (IGF1R, P = 0.0002). Using Cattle QTL Database, the identified genes were associated with milk yield, fat and protein percentage, protein yield, somatic cell score, protein-to-fat ratio, stearic fatty acid content, calving ease, daughter pregnancy rate, stillbirth and inseminations per conception. GWAS results identified significant SNPs associated with milk production and fertility traits that will allow in the nearest future improve reliability for genomic prediction of young bulls and boost genetic trend in the Russian Simmental cattle population. The study was funded by RFBR within project No.17-29-08030

scholarly journals Beziehungen zwischen Milchleistung und Fruchtbarkeit in einer Schwarzbuntpopulation nach intensiver Steigerung der Milchleistung

2003 ◽  
Vol 46 (2) ◽  
pp. 103-112
Author(s):  
G. Seeland ◽  
C. Henze
Keyword(s):  
Protein Content ◽  
Genetic Correlation ◽  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Genetic Parameters ◽  
Correlation Coefficients ◽  
Protein Yield ◽  
Environmental Correlation ◽  
Fertility Traits

Abstract. Title of the paper: Relations between milk yield and fertility after strong increased milk yield The purposes of the study were to estimate genetic parameters for milk production and fertility traits. The study included data on about 75,000 first and 40,000 second parity cows of German Friesian. The estimated coefficients of heritability for milk, fat and protein yield were in comparison to other previous estimates relatively high. In contrast to that, heritability of fat and protein content was very low. As expected, heritability of fertility also was very low, ranging from 0.009 to 0.127, depending on trait. Genetic correlation between milk, fat and protein yield, and fertility traits were high and unfavourable and characterize an antagonistic relation. The estimated environmental correlation coefficients are negible. The genetic coefficients of regression between milk yield and fertility are low and vary between the pair of traits. Low genetic coefficients make the effect of antagonism less strong.

Increasing Energy Ration of Bali Cattle to Improve Digestible Nutrient, Milk Yield and Milk Quality

2017 ◽  
Vol 3 (1) ◽  
pp. 7
Author(s):  
Ni Nyoman Suryani ◽  
I Wayan Suarna ◽  
Ni Putu Sarini ◽  
I Gede Mahardika
Keyword(s):  
Energy Intake ◽  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Block Design ◽  
Parent Body ◽  
Milk Quality ◽  
Metabolizable Energy ◽  
Increase Energy Intake ◽  
Bali Cattle

To determine the effect of energy levels on digestible nutrient, milk production and milk quality of 7 months pregnant Bali cattle, was the purpose of this study. The study was conducted in Bali, Province of Indonesia on 12 pregnant breeding phase of pre-calving (2 months before the birth) with the parent body weight 329-340 kg/head. The treatment given is four types of Metabolizable Energy (ME) levels: 2000, 2100, 2200 and 2300/kg respectively as treatment A, B, C, and D. All ration contain 10% of crude protein. Variables measured: energy intake, digestible nutrient, milk yield, and milk quality. This research is a randomized block design. The results showed that increase energy ration until 2300 kcal ME/kg would significantly (P<0.05) increase energy intake and highest at cattle consumed ratio D is 22239.55 kcal/day. However, digestible nutrient was not affected. Milk production increased with increasing energy rations and highest (P<0.05) at cattle received treatment D is 2179.83 ml/day compared to treatment A 936.67 ml/day. Milk fat and milk lactose also highest (P<0.05) in treatment D are 8.56% and 4.76% respectively. Based on these results, it can be concluded that increase energy ration will increase energy intake, milk yield and milk fat and milk lactose of Bali cattle. 

An association analysis between PRL genotype and milk production traits in Italian Mediterranean river buffalo

2017 ◽  
Vol 84 (4) ◽  
pp. 430-433 ◽  
Author(s):  
Jun Li ◽  
Aixin Liang ◽  
Zipeng Li ◽  
Chao Du ◽  
Guohua Hua ◽  
...  
Keyword(s):  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Fat Content ◽  
Phenotypic Variance ◽  
River Buffalo ◽  
Production Traits ◽  
Milk Production Traits ◽  
Exon 2 ◽  
Mediterranean River

This Research Communication describes the association between genetic variation within the prolactin (PRL) gene and the milk production traits of Italian Mediterranean river buffalo (Bufala mediterranea Italiana). High resolution melting (HRM) techniques were developed for genotyping 465 buffaloes. The association of genetic polymorphism with milk production traits was performed and subsequently the effects of parity and calving season were evaluated. Single nucleotide polymorphisms (SNPs) were identified at exons 2 and 5 and at introns 1 and 2. All the SNPs were in Hardy–Weinberg equilibrium, and statistical analysis showed that the polymorphism of intron1 was significantly (P < 0·05) associated with milk yield, milk protein content and peak milk yield. The average contribution of the intron1 genotype (r2intron1) to total phenotypic variance in milk production traits was 0·09, and the TT genotype showed lower values than CC and CT genotypes. A nonsynonymous SNP was identified in exon 2, which resulted in an amino acid change from arginine to cysteine. Moreover, the polymorphism of exon 2 was associated significantly with milk fat content (P < 0·05), and the buffaloes with TT genotype showed higher total fat content than the buffaloes with CT genotype. These findings provide evidence that polymorphisms of the buffalo PRL gene are associated with milk production traits and PRL can be used as a candidate gene for marker-assisted selection in Italian Mediterranean river buffalo breeding.

scholarly journals Milk production and its relationship with milk composition, body and udder morphological traits in Bedouin goat reared under arid conditions

2018 ◽  
Vol 41 (1) ◽  
pp. 42552
Author(s):  
Fatima Kouri ◽  
Salima Charallah ◽  
Amina Kouri ◽  
Zaina Amirat ◽  
Farida Khammar
Keyword(s):  
Body Weight ◽  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Morphological Traits ◽  
Growth Traits ◽  
Average Daily Gain ◽  
Arid Conditions ◽  
Daily Milk Yield ◽  
Daily Milk

 This research aims to assess the performances of lactating Bedouin goat under arid conditions, focusing on the relationship of milk yield with body and udder morphology and growth traits. Fourteen goats and their kids were followed during early lactation (90 days post-partum). Mean daily milk yield was 0.56 kg. Milk fat, proteins, lactose, solids non-fat and minerals were respectively 34.9, 38.9, 48.8, 107 and 6.7 g L-1. Mean kids’ birth weight, adjusted body weight at 90 days of age and average daily gain were respectively 2 kg, 6.6 kg and 51.4 g day-1. Daily milk yield was correlated with goats’ body weight, withers height, rump height, udder width and udder circumference but not with linear udder score and growth performances. These results provide important data about the milk production of Bedouin goat emphasizing its correlation with body and udder morphological traits which can help to elaborate a specific breeding program for this breed. 

Effects of feeding peas to high-producing dairy cows

1995 ◽  
Vol 75 (4) ◽  
pp. 625-629 ◽  
Author(s):  
R. R. Corbett ◽  
L. A. Goonewardene ◽  
E. K. Okine
Keyword(s):  
Dairy Cows ◽  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Dairy Herd ◽  
Protein Source ◽  
Canola Meal ◽  
Stage Of Lactation ◽  
Nutrient Analyses ◽  
Protein Milk

The effect of substituting peas for soybean and canola meals as a protein source in a high-producing dairy herd was studied in 66 Holstein cows, divided into two groups based on stage of lactation, parity, level of milk production and days in milk. Two 18.5% crude protein grain concentrate diets were formulated based on the nutrient analyses of the forages available. The control grain mix contained standard protein sources, principally soybean and canola meal (SBM\CM) while the test grain mix was formulated to contain approximately 25% field peas as the major source of protein. Both grain rations were formulated to the same nutrient specifications and balanced for undegradable protein. The duration of the trial was 6 mo during which grain feeding levels were adjusted monthly based on milk yield. For cows in early lactation, 4% fat-corrected milk yield was higher (P < 0.05) for cows fed pea based concentrates (31.3 kg d−1) than for cows fed SBM\CM supplement (29.7 kg d−1). Fat-corrected milk yield was not affected by source of protein in mid- and late-lactation cows. Fat-corrected milk production was not different (P > 0.05) for cows fed SBM\CM compared with cows fed the pea supplement when cows across all stages of lactation were included in the analyses. Milk fat percent was significantly higher (P < 0.05) for early- and mid-lactation cows fed the pea supplement. The results suggest that peas can be substituted for SBM\CM as a protein source for high-producing dairy cows. Key words: Dairy cow, pea, soybean and canola meal supplement, undegradable protein, milk production

scholarly journals Identification of SNPs and Candidate Genes for Milk Production Ability in Yorkshire Pigs

2021 ◽  
Vol 12 ◽  
Author(s):  
Lijun Shi ◽  
Yang Li ◽  
Qian Liu ◽  
Longchao Zhang ◽  
Ligang Wang ◽  
...  
Keyword(s):  
Candidate Genes ◽  
Milk Production ◽  
Milk Fat ◽  
Enrichment Analysis ◽  
Significant Snps ◽  
Functional Enrichment ◽  
Limiting Factor ◽  
Lactation Performance ◽  
Yorkshire Pigs ◽  
Sow Lactation

Sow milk production ability is an important limiting factor impacting suboptimal growth and the survival of piglets. Through pig genetic improvement, litter sizes have been increased. Larger litters need more suckling mammary glands, which results in increased milk from the lactating sow. Hence, there is much significance to exploring sow lactation performance. For milk production ability, it is not practical to directly measure the milk yield, we used litter weight gain (LWG) throughout sow lactation as an indicator. In this study, we estimated the heritability of LWG, namely, 0.18 ± 0.07. We then performed a GWAS, and detected seven significant SNPs, namely, Sus scrofa Chromosome (SSC) 2: ASGA0010040 (p = 7.73E-11); SSC2:MARC0029355 (p = 1.30E-08), SSC6: WU_10.2_6_65751151 (p = 1.32E-10), SSC7: MARC0058875 (p = 4.99E-09), SSC10: WU_10.2_10_49571394 (p = 6.79E-08), SSC11: M1GA0014659 (p = 1.19E-07), and SSC15: MARC0042106 (p = 1.16E-07). We performed the distribution of phenotypes corresponding to the genotypes of seven significant SNPs and showed that ASGA0010040, MARC0029355, MARC0058875, WU_10.2_10_49571394, M1GA0014659, and MARC0042106 had extreme phenotypic values that corresponded to the homozygous genotypes, while the intermediate values corresponded to the heterozygous genotypes. We screened for flanking regions ± 200 kb nearby the seven significant SNPs, and identified 38 genes in total. Among them, 28 of the candidates were involved in lactose metabolism, colostrum immunity, milk protein, and milk fat by functional enrichment analysis. Through the combined analysis between 28 candidate genes and transcriptome data of the sow mammary gland, we found nine commons (ANO3, MUC15, DISP3, FBXO6, CLCN6, HLA-DRA, SLA-DRB1, SLA-DQB1, and SLA-DQA1). Furthermore, by comparing the chromosome positions of the candidate genes with the quantitative trait locus (QTLs) as previously reported, a total of 17 genes were found to be within 0.86–94.02 Mb of the reported QTLs for sow milk production ability, in which, NAV2 was found to be located with 0.86 Mb of the QTL region ssc2: 40936355. In conclusion, we identified seven significant SNPs located on SSC2, 6, 7, 10, 11, and 15, and propose 28 candidate genes for the ability to produce milk in Yorkshire pigs, 10 of which were key candidates.

scholarly journals Characteristics of the productive-economic indicators of cows of Yaroslavl breed of different genotypes

2020 ◽  
pp. 43-52
Author(s):  
N. Kosyachenko ◽  
Marina Abramova ◽  
M. Lapina
Keyword(s):  
Protein Content ◽  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Live Weight ◽  
Practical Significance ◽  
Holstein Breed ◽  
Blood Fraction ◽  
The Impact ◽  
The Relationship

Abstract. Aim. The study of the influence of crossbriding on the growth and development of heifers and subsequent productive and reproductive qualities of cows on the first lactation. Methods. Using statistical methods, correlation analysis and ANOVA for evaluated genetic indicators of economic-valuable traits of dairy cattle. In particular was studied live weight of heifers from birth to 18 months, first insemination age and first fecundation age, live weight at fecundation, frequency of insemination, first calving age, days open, live weight at first lactation, milk yield for 305 days (kg), fat (%, kg) and protein (%, kg) in milk. Results. Relationship between productive indicators and the genotype of the animal is established. When assessing the strength of the influence of the factor «blood on the Holstein breed» it was found that the greatest impact can be traced at the age of 6 and 18 months, and is respectively 12.7 % and 17.1 %.The reproductive qualities of the first-calf cows decreased with the increase percent of blood in the Holstein breed. Evaluation of the impact of crossbreeding on milk production at first lactation has revealed significant strong influence on milk yield for 305 days of first lactation, and related signs the amount of milk fat and protein. According to qualitative indicators, the low influence of the Holstein blood fraction was found, while to a greater extent on the fat content than on the protein content in milk. Evaluation of phenotypic and genotypic correlations of milk yield and quality components of milk revealed average negative phenotypic and low negative genotypic correlation in all groups. The exception was in heifers of Yaroslavl breed with percent of Holstein blood less than 50 %, in which the relationship of yield x protein was positive. The relationship between milk yield and fat and protein content in milk has the opposite moderate character and strength. Practical significance. Studies was established that breeding of animals of Holstein and Yaroslavl breeds in one herd allows to receive an optimum ratio of milk production with optimal percentage fat and protein. For this herd among animals of the improved genotypes of the Yaroslavl breed, the use of genotypes with a percent of blood in the Holstein breed from 75.1 % to 87.6 % is optimal, which should be taken into account when selecting bulls to the breeding program.

EFFECTS OF FEEDING A HIGH LEVEL OF TOWER RAPESEED MEAL IN DAIRY RATIONS ON FEED INTAKE AND MILK PRODUCTION

1977 ◽  
Vol 57 (4) ◽  
pp. 653-662 ◽  
Author(s):  
H. R. SHARMA ◽  
J. R. INGALLS ◽  
J. A. MCKIRDY
Keyword(s):  
Adverse Effect ◽  
Milk Production ◽  
Milk Yield ◽  
Feed Intake ◽  
Milk Fat ◽  
Rapeseed Meal ◽  
Feed Consumption ◽  
Short Term ◽  
N Retention ◽  
High Level

In experiment 1, 12 cows were used to compare the two (0–0) rapeseed meal (1788 and Tower) varieties with the commercial rapeseed meal (CRSM) and soybean meal (SBM). Feed intake, milk yield and fat content were not different (P > 0.05) among the four treatments; however, protein content was higher (P < 0.05) for the cows fed CRSM and SBM diets than for those fed the 1788–RSM diet. But more (P < 0.05) milk fat was produced by the cows fed 1788–RSM than by those fed CRSM and SBM diets. In experiment 2, eight cows were used to determine the effects of replacing SBM with Tower and also replacing a portion of Tower with urea (TU) in a mixed or extruded (TUE) form on feed intake, milk yield and nitrogen (N) retention. No differences were observed in feed consumption, milk yield or composition among the treatments. Serum thyroxine (T4) level was higher (P < 0.05) for the cows fed SBM than for those fed the 1788–SBM and was similar to levels for cows fed CRSM and Tower in the first experiment. However, no differences were found in thyroxine level in the second experiment. Extrusion of Tower–urea mixture increased (P < 0.05) the N retention compared with other treatments. These short-term studies suggest that up to 25% Tower RSM can be used in dairy rations without adverse effect on performance.

scholarly journals The Mode of Grass Supply to Dairy Cows Impacts on Fatty Acid and Antioxidant Profile of Milk

Foods ◽  
2020 ◽  
Vol 9 (9) ◽  
pp. 1256
Author(s):  
Senén De La Torre-Santos ◽  
Luis J. Royo ◽  
Adela Martínez-Fernández ◽  
Cristina Chocarro ◽  
Fernando Vicente
Keyword(s):  
Fatty Acids ◽  
Fatty Acid ◽  
Dairy Cows ◽  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Unsaturated Fatty Acids ◽  
Major Influence ◽  
Grass Silage ◽  
Zero Grazing

The optimization of milk production includes a rational use of forages, respect for the environment and offers the best quality to consumers. Milk production based on grass and forages produces healthier milk and it is widely spread throughout the Atlantic arc to maximize milk yield per hectare. However, the mode of offering the grass can have a major influence on milk composition. The aim of this study was to evaluate the effect of grass supply mode (grazing, zero-grazing or ensiling) on dairy cows’ performance, with particular reference to fatty acids and fat-soluble antioxidants concentration. A three by three Latin square experiment was performed with 18 dairy cows. Experimental treatments consisted of exclusive feeding with grass silage and zero-grazing, both offered ad libitum indoors, or grazing for 24 h. The results showed that grazing cows had a higher dry matter intake and greater milk yield than cows feeding on grass silage and zero-grazing, as well as higher concentrations of protein, lactose, nonfat-solids and urea in milk than housed cows. Milk fat from grazing cows had a higher proportion of unsaturated fatty acids than from cows feeding on grass silage and zero-grazing, with significant differences in the proportion of vaccenic and rumenic acids. The 18:1 trans-11 to 18:1 trans-10 ratio is proposed as biomarker to identify the milk produced from the management system of grazing cattle. Milk from grazing cows had a greater proportion of lutein than cows eating grass silage, with the zero-grazing system having intermediate values. In conclusion, the mode of grass supply affects fatty acid and antioxidant profiles of milk.

Investigation of myostatin and calpain 3 gene polymorphisms and their association with milk-production traits in Sfakia sheep

2020 ◽  
Vol 60 (3) ◽  
pp. 347
Author(s):  
Adel H. M. Ibrahim ◽  
Nikolaos Tzanidakis ◽  
Smaragda Sotiraki ◽  
Huitong Zhou ◽  
Jonathan Hickford
Keyword(s):  
Nucleotide Sequence ◽  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Fat Content ◽  
Solid Content ◽  
Production Traits ◽  
Milk Production Traits ◽  
Banding Patterns ◽  
Milk Solid

Context Genetic selection based on genetic markers for economically important traits in Sfakia sheep. Aims The aim of the present study was to investigate variation in the ovine myostatin gene (MSTN) and calpain 3 gene (CAPN3), and their association with milk-production traits. Methods Records for milk yield, milk fat content, protein content, lactose content, and non-fat solid content, pH and somatic-cell score (log), were obtained from 376 Sfakia ewes. Polymerase chain reaction–single-strand conformational polymorphism (PCR–SSCP) analyses were used to detect variation in intron 1 of MSTN and exon 10 of CAPN3. General linear models were then used to test for associations between the variation in MSTN and CAPN3, and milk-production traits. Key results The SSCP banding patterns for MSTN showed four variants (A1, A2, A3 and A4), which contained nine nucleotide sequence differences. Four SSCP banding patterns (C1, C2, C3 and C4) were observed for CAPN3 and these contained eight nucleotide-sequence differences. The MSTN variation was associated (P &lt; 0.05) with variation in milk yield and non-fat milk solid content. Variation in CAPN3 was associated with milk yield (P &lt; 0.001), fat content (P &lt; 0.05) and lactose content (P &lt; 0.05). Association analyses between the presence/absence of MSTN and CAPN3 variants and milk-production traits showed that a variant of MSTN that had previously between associated with muscle hypertrophy was associated with decreased milk yield (P &lt; 0.05) and a lower non-fat milk solid content (P &lt; 0.01). A CAPN3 variant that had previously been associated with increased sheep-carcass loin lean-meat yield was associated with a decreased milk yield (P &lt; 0.01) and a decreased milk fat content (P &lt; 0.05). Conclusions Our results have provided an insight into the effects of variation in ovine MSTN and CAPN3 on milk-production traits in sheep. Implications To preserve the dual-purpose characteristics of Sfakia sheep, breeding goals should take into account the possible antagonism between meat and milk traits.

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