scholarly journals In-House Forecasting of Crop Latitude Adaptation through a Daylength-sensing-based Environment Adaptation Simulator (DEAS)

2020 ◽  
Author(s):  
Leilei Qiu ◽  
Qinqin Wu ◽  
Xiaoying Wang ◽  
Gui Zhuang ◽  
Jiupan Han ◽  
...  

ABSTRACTGlobal climate change necessitates the accelerated breeding of new crop varieties that can sustain yields in new environments. As a proxy for environmental adaptation, the selection of crops that can adapt to different latitudes is an appealing strategy. However, such selection currently involves a lengthy procedure that severely restricts the rapid breeding of varieties. Here, we aimed to combine molecular technologies with an in-house streamlined screening method to facilitate rapid selection for latitude adaptation. We established the Daylength-sensing-based Environment Adaptation Simulator (DEAS) to measure crop latitude adaptation via the transcriptional dynamics of florigen genes at different latitudes. We used different statistical approaches to demonstrate that DEAS predicts the florigen expression profiles in rice with high accuracy. Furthermore, we demonstrated the potential for application of DEAS in different crops. Incorporating DEAS into the breeding programs of conventional and underutilized crops could help meet the future needs for crop adaptation and promote sustainable agriculture.

2016 ◽  
Vol 11 (3) ◽  
pp. 217
Author(s):  
Estu Nugroho ◽  
Budi Setyono ◽  
Mochammad Su’eb ◽  
Tri Heru Prihadi

Program pemuliaan ikan mas varietas Punten dilakukan dengan seleksi individu terhadap karakter bobot ikan. Pembentukan populasi dasar untuk kegiatan seleksi dilakukan dengan memijahkan secara massal induk ikan mas yang terdiri atas 20 induk betina dan 21 induk jantan yang dikoleksi dari daerah Punten, Kepanjen (delapan betina dan enam jantan), Kediri (tujuh betina dan 12 jantan), Sragen (27 betina dan 10 jantan), dan Blitar (15 betina dan 11 jantan). Larva umur 10 hari dipelihara selama empat bulan. Selanjutnya dilakukan penjarangan sebesar 50% dan benih dipelihara selama 14 bulan untuk dilakukan seleksi dengan panduan hasil sampling 250 ekor individu setiap populasi. Seleksi terhadap calon induk dilakukan saat umur 18 bulan pada populasi jantan dan betina secara terpisah dengan memilih berdasarkan 10% bobot ikan yang terbaik. Calon induk yang terseleksi kemudian dipelihara hingga matang gonad, kemudian dipilih sebanyak 150 pasang dan dipijahkan secara massal. Didapatkan respons positif dari hasil seleksi berdasarkan bobot ikan, yaitu 49,89 g atau 3,66% (populasi ikan jantan) dan 168,47 g atau 11,43% (populasi ikan betina). Nilai heritabilitas untuk bobot ikan adalah 0,238 (jantan) dan 0,505 (betina).Punten carp breeding programs were carried out by individual selection for body weight trait. The base population for selection activities were conducted by mass breeding of parent consisted of 20 female and 21 male collected from area Punten, eight female and six male (Kepanjen), seven female and 12 male (Kediri), 27 female and 10 male (Sragen), 15 female and 11 male (Blitar). Larvae 10 days old reared for four moths. Then after spacing out 50% of total harvest, the offspring reared for 14 months for selection activity based on the sampling of 250 individual each population. Selection of broodstock candidates performed since 18 months age on male and female populations separately by selecting based on 10% of fish with best body weight. Candidates selected broodstocks were then maintained until mature. In oder to produce the next generation 150 pairs were sets and held for mass spawning. The results revealed that selection response were positive, 49.89 g (3.66%) for male and 168.47 (11.43%) for female. Heritability for body weight is 0.238 (male) and 0.505 (female).


2021 ◽  
Vol 2 (1) ◽  
Author(s):  
Delphine M. Pott ◽  
Sara Durán-Soria ◽  
Sonia Osorio ◽  
José G. Vallarino

AbstractPlant quality trait improvement has become a global necessity due to the world overpopulation. In particular, producing crop species with enhanced nutrients and health-promoting compounds is one of the main aims of current breeding programs. However, breeders traditionally focused on characteristics such as yield or pest resistance, while breeding for crop quality, which largely depends on the presence and accumulation of highly valuable metabolites in the plant edible parts, was left out due to the complexity of plant metabolome and the impossibility to properly phenotype it. Recent technical advances in high throughput metabolomic, transcriptomic and genomic platforms have provided efficient approaches to identify new genes and pathways responsible for the extremely diverse plant metabolome. In addition, they allow to establish correlation between genotype and metabolite composition, and to clarify the genetic architecture of complex biochemical pathways, such as the accumulation of secondary metabolites in plants, many of them being highly valuable for the human diet. In this review, we focus on how the combination of metabolomic, transcriptomic and genomic approaches is a useful tool for the selection of crop varieties with improved nutritional value and quality traits.


Agronomy ◽  
2020 ◽  
Vol 10 (10) ◽  
pp. 1490
Author(s):  
Anna Kołton ◽  
Kinga Kęska ◽  
Małgorzata Czernicka

Waterlogging anomalies have recently increased, causing a reduction in yield and the loss of billions of dollars. Plant selection for increased tolerance to stress factors requires parameters with high sensitivity, as well as fast and inexpensive measurements. The aim of this study was to select tomato and cucumber accessions that reveal sensitivity and tolerance to waterlogging stress at an early vegetative stage. The selection of effective criteria for assessing plants was also an important issue. A total of 19 cucumber (including four highly homozygous) and 16 tomato accessions were evaluated, and plants with three true leaves were examined. The root zone of stressed plants was waterlogged for 7 days in a deep container. Morphological and physiological characteristics were obtained after 7 days of treatment and used for cluster analysis for discrimination of tolerant and sensitive accessions. Significant decreases in Fv/F0, Fv/Fm, Area, PI ABS, ET0/ABS, and ET0/TR0 parameters, as well as increases in DI0/RC, were observed in sensitive accessions, with no changes in tolerant plants. The OJIP test parameters (Fv/F0, PI ABS, DI0/RC, and Area) were more sensitive in selecting for waterlogging stress than Fv/Fm. The present research can be used in breeding programs. Selected accessions will support a detailed explanation of the physiological differences in response to waterlogging stress in tomato and cucumber plants.


2021 ◽  
Vol 17 (1) ◽  
pp. 79-92
Author(s):  
Alessandra Ferraiolo de Freitas ◽  
Ricardo Lopes ◽  
Raimundo Nonato Vieira da Cunha ◽  
Antônio José de Abreu Pina ◽  
Marcos Deon Vilela Resende ◽  
...  

Interspecific hybridization between Elaeis oleiferaand Elaeisguineensis(HIE OxG) is explored in plant breeding programs to meet the demand for resistant cultivars to fatal yellowing, which is the biggest phytosanitary problem in E. guineensisplants in South America, including Brazil. In addition to resistance to fatal yellowing, cultivars should have high oil yield, which depends directly on bunch production and oil content in the bunches (O/FFB). The obtaining of genetic gains in O/FFBfor OxG requires information on the genotypic values of the breeding population and the understanding of how the components of the bunch are related to this characteristic in this type of material. Thus, the objective of this work was toestimate genotypic values and genetic correlations for bunch components and analyze the potential of using these components in the selection of gains for O/FFB. The physical composition and oil content in mesocarp of 840 bunches from 39 HIE OxG F1 progenies were analyzed. Genotypic values for bunch components were estimated using the procedure REML/BLUP andwere obtained from genetic correlations between them. All evaluated components presented genetic variation with possibility of gains through selection, especially the oil content in the bunch (O/FFB), which presented variability above 23%. The selection for O/FFBwill mainly result in bunches with a higher fruit proportion over the weight of the bunch (TF/FFB), greater oil contents in mesocarp of normal and parthenocarpic fruits, and lower proportion of empty spikelets. Considering the high and positive correlations between O/FFBand the evaluated characteristics and the practicality of evaluation, the characteristics with higher potential for indirect selection to increase O/FFBare TF/FFBand proportion of mesocarp in normal fruits.


2018 ◽  
Vol 48 (2) ◽  
pp. 178-189 ◽  
Author(s):  
Iara Gonçalves dos Santos ◽  
Cosme Damião Cruz ◽  
Moysés Nascimento ◽  
Renato Domiciano Silva Rosado ◽  
Reinaldo de Paula Ferreira

ABSTRACT Alfalfa breeding aimed at trait improvement for livestock feed takes longer periods of time, if compared to many other crops. Therefore, better selection methods are necessary for the success of alfalfa breeding programs. Although knowing about selection methods is quite important, there is a notable lack of information, as regards successful solutions. This study aimed to use direct, indirect and simultaneous selection methods for selecting alfalfa cultivars, based on yield traits and nutritive value. The evaluated traits were subdivided into two groups: forage yield and nutritive value. Selection gains were estimated by direct, indirect and simultaneous selection for each group, considering the selection of the 25 % best cultivars. Direct and indirect selections among genotype averages are not efficient to provide the desirable responses to the whole set of traits. The results for simultaneous selection, using the Tai index, provided a more balanced gain distribution to the set of traits in all cuts. The simultaneous selection allowed the identification of the 5681 and Verdor cultivars in the first cut, as well as ProINTA Patricia in the second cut, as superior in the two groups of evaluated traits.


Author(s):  
M. A. Malek ◽  
M. M. Chowdhury ◽  
M. A. Haque ◽  
M. Rasel ◽  
M. R. Molla ◽  
...  

Lentil is an important pulse crop with high nutritional value and high market price worldwide. Molecular markers have emerged as useful tools to assess the genetic diversity across crops. The study was conducted to explore genetic diversity of twenty lentil genotypes considering yield and yield attributing traits. Among all genotypes, BARI Masur-6, BARI Masur-7 followed by genotypes BD-3806 and BD-4090 showed the highest value of yield attributing traits therefore, these genotypes are considered as best performer. The results of cluster analysis based on the Ward’s method grouped the genotypes into three clusters and the genotypes of cluster III revealed the maximum value for yield per plants which indicated their importance in the selection for yield improvement program of lentil. Afterwards, 20 genotypes were evaluated through 7 sets of SSR primers to assess genetic diversity among the genotypes. Among them, four sets of primers viz., SSR 19, SSR 33, SSR 90 and SSR 213 showed high polymorphism which suggesting the greater genetic diversity in the genotypes. The unweighted pair group method of arithmetic mean (UPGMA) dendrogram based on Nei’s (1973) genetic distance led the genotypes into four major clusters which showed a bit deviation with the morphological cluster. The findings of this study will be very useful for selection of appropriate parents and the genetic understanding for the set up for future systematic lentil breeding programs.


2022 ◽  
Vol 52 (3) ◽  
Author(s):  
Thiago Barros ◽  
Roberto Luis Weiler ◽  
Juliana Medianeira Machado ◽  
Diógenes Cecchin Silveira ◽  
André Pich Brunes ◽  
...  

ABSTRACT: Andropogon lateralis Nees is a native grass of southern Brazil and is one of the most frequent specie found in native grasslands. The species is widely distributed and has a high degree of phenotypic plasticity, which makes it highly adaptable to different edaphoclimatic conditions and management. This study aimed to evaluate the behavior of twelve ecotypes of A. lateralis, collected in different regions of the state of Rio Grande do Sul and cut to three different heights and subjected to two different defoliation frequencies. From September to February, the ecotypes were evaluated for total dry matter, leaf and stem yields. In addition, total, vegetative and reproductive tillers and plant height were measured. These characteristics are important for the selection of superior genotypes in terms of genetic variability and forage production. Total dry matter and leaf dry matter are characteristics with agronomic importance and they showed the highest correlation (r = 0.77), enabling an indirect selection for one of these characteristics. The natural selection of plants resulted in distinct structural, morphological and productive characteristics with heterogeneity that allows the selection and grouping according to the characteristics, ecotypes with superior agronomic characteristics can be included in breeding programs.


2018 ◽  
Vol 24 (1) ◽  
pp. 7-11 ◽  
Author(s):  
Petterson Baptista Da Luz ◽  
Alessandro Aparecido Brito Dos Santos ◽  
Valdete Campos Ambrosio ◽  
Leonarda Grillo Neves ◽  
Armando Reis Tavares

There are few varieties of commercial peppers for landscape use, although Capsicum germplasm banks in Brazil have accesses that can be used in breeding programs to create new ornamental peppers. The present study aims evaluate the genetic variability of pepper accesses in relation to their ornamental potential by a selection of indices. A total of 55 peppers accessions were used in the germplasm collection of Mato Grosso State University. The heritability of the studied variables showed that all the variables have high heritability. Fruit length and weight showed the highest heritability values with 99.88% and 99.67%, respectively. The selection based on Summa Rank-Based Index would result in plants with long fruits and peduncles, fruits with higher weight and wider, with leaves and petioles with longer lengths, and a reduction of other characteristics. The Base and the Classical Indexes are significant, as it would result in compact canopy and reduced plants, desired characteristics for ornamental plants. The index based on Summa Rank-Based Index permitted a great gain in pepper selection for ornamental purpose.


Methodology ◽  
2018 ◽  
Vol 14 (4) ◽  
pp. 177-188 ◽  
Author(s):  
Martin Schultze ◽  
Michael Eid

Abstract. In the construction of scales intended for the use in cross-cultural studies, the selection of items needs to be guided not only by traditional criteria of item quality, but has to take information about the measurement invariance of the scale into account. We present an approach to automated item selection which depicts the process as a combinatorial optimization problem and aims at finding a scale which fulfils predefined target criteria – such as measurement invariance across cultures. The search for an optimal solution is performed using an adaptation of the [Formula: see text] Ant System algorithm. The approach is illustrated using an application to item selection for a personality scale assuming measurement invariance across multiple countries.


Confectionery sunflower - a special area of use of sunflower, which requires the creation of marketable seeds quality features. One of the possible ways to create large-fruited sunflower is to create production hybrids and lines. Objective: to evaluate the created new large-fruited sunflower lines by a complex of morphological characters and determine the best lines for use as large-seeds hybrids as parent components or source material. In 2016-2019 years on the basis of the Institute of Oilseed Crops NAAS a study was conducted to assess the economic characteristics of large-fruited sunflower lines. We studied a collection of 27 lines of large-seeds sources. The lines were created by direct selection or crossing and sampling: Reyny of Argentinean origin, Zaporizhzhya confectionery variety, confectionery hybrid with striped pericarp color of Israeli origin, white seed of Turkish origin, synthetic population - donor of complex resistance. To study from the collection, lines were drawn that went through at least 7 generations with selection for seed size. Experience has shown that the shortest growing season for lines 174d and KP11 was 99 days, and the longest for lines I2K670 was 109 days. In the studied collection, the greatest mass of 1000 seeds has the KP11-146.47g line, which is the mother component and does not have branching. The second by weight of 1000 seeds (109 g) stood out line 168v, which also had branches and pollen fertility restoration genes and will be used as the paternal form. The third largest is also one basket line ZKN51-100. The collection included lines originating from the same combination, but with a different morphotype for the presence and absence of branching. So, based on the combination of KP11 x Zaporizhzhya Confectionery, three lines were obtained. A mass of 1000 seeds was observed in 98-86 g, with the branching line having the largest mass of 1000 seeds. The lines created with one combination VK678 x ZKN32: with a branch 168a had a mass of 1000 seeds 95g, and a line 168b - without a branch 109 g. Of the two lines obtained from the descendants of the combination KP11 x the striped hybrid both had branches, but the seeds were much smaller (weight of 1000 seeds 59 and 79 g). The collection also studied samples created on the basis of varieties and populations 160c, 174, 175b, the mass of 1000 seeds of which turned out to be more acceptable for large-fruited use from 83 to 99 g. Summing up the results of studying the collection of newly created lines, we can highlight the lines 162d, 168v, 175b, KP11 that are potentially promising for use in hybrids. The selections showed that large-fruited lines can be obtained from large-fruited varieties, self-pollination of large-fruited hybrids and crossing lines with hybrids and varieties. Self-pollination and selection of large-fruited lines in several generations does not provide the necessary variability for positive changes in selections. The result of the selection by weight of 1000 seeds in the offspring from crosses and from populations creates opportunities for new large-seeds sunflower.


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