Pathogenic Variation of Cladosporium caryigenum Isolates and Corresponding Differential Resistance in Pecan

To facilitate the breeding of scab-resistant pecan [Carya illinoinensis (Wangenh.) C. Koch] cultivars, more information is needed about the pathogenic variation of the causal organism, Cladosporium caryigenum (Ell. et Lang.) Gottwald (1982). This study examined the virulence patterns resulting from the field inoculations of 19 pecan cultivars with 12 monoconidial isolates from 8 pecan cultivars at 7 locations. The virulence pattern was different for each of the fungal isolates. Each isolate was virulent on some cultivars and avirulent on others. Most isolates were most virulent on the cultivar of their origin and one or a few other cultivars. Several cultivars were resistant to most of the tested isolates. The results indicate a large pool of differential and ephemeral resistance to scab resides in the pecan germplasm. Microscopic examination of developing lesions suggests that resistance is mediated by the speed of plant cell wall modifications that limit the growth of subcuticular hyphae. This information will be useful in the selection of cultivars with functionally different resistance genes for use in designing cultivar mixtures or in breeding programs.

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Selection of Host Differentials for Elucidating Pathogenic Variation in Magnaporthe grisea Populations Adapted to Finger Millet (Eleusine coracana)

Plant Disease ◽

10.1094/pdis-10-14-1089-re ◽

2015 ◽

Vol 99 (12) ◽

pp. 1784-1789 ◽

Cited By ~ 3

Author(s):

Talluri Kiran Babu ◽

Rajan Sharma ◽

R. P. Thakur ◽

Hari D. Upadhyaya ◽

P. Narayan Reddy ◽

...

Keyword(s):

Andhra Pradesh ◽

Magnaporthe Grisea ◽

Finger Millet ◽

Blast Resistance ◽

Resistance Breeding ◽

Breeding Programs ◽

Pathogenic Variation ◽

Differential Set ◽

Disease Resistance Breeding ◽

Selection Of

Blast, caused by Pyricularia grisea (teleomorph: Magnaporthe grisea), is the most devastating disease of finger millet affecting production, utilization, and trade in Africa and Southeast Asia. An attempt was made to select a set of putative host differentials that can be used to determine virulence diversity in finger-millet-infecting populations of M. grisea. Thus, a differential set comprising eight germplasm accessions selected from finger millet core collection (IE 2911, IE 2957, IE 3392, IE 4497, IE 5091, IE 6240, IE 6337, and IE 7079) and a resistant (‘GPU 28’) and a susceptible (‘VR 708’) variety was developed. This differential set was used to study pathogenic variation in 25 isolates of M. grisea collected from Karnataka, Telangana, and Andhra Pradesh states in India. Based on the reaction (virulent = score ≥4 and avirulent = score ≤3 on a 1-to-9 scale) on host differentials, nine pathotypes were identified among 25 M. grisea isolates. Pathotype 9, represented by isolate Pg23 from Vizianagaram, was the most virulent because it could infect all of the host differentials except GPU 28. This study will be helpful in devising strategies for monitoring virulence change in M. grisea populations, and for identification of blast resistance in finger millet for use in disease resistance breeding programs.

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ESTIMASI NILAI HERITABILITAS BOBOT IKAN MAS VARIETAS PUNTEN DALAM PROGRAM SELEKSI INDIVIDU

Jurnal Riset Akuakultur ◽

10.15578/jra.11.3.2016.217-223 ◽

2016 ◽

Vol 11 (3) ◽

pp. 217

Author(s):

Estu Nugroho ◽

Budi Setyono ◽

Mochammad Su’eb ◽

Tri Heru Prihadi

Keyword(s):

Body Weight ◽

Selection Response ◽

Base Population ◽

Breeding Programs ◽

Male And Female ◽

Body Weight Trait ◽

Population Selection ◽

Selection For ◽

Weight Trait ◽

Selection Of

Program pemuliaan ikan mas varietas Punten dilakukan dengan seleksi individu terhadap karakter bobot ikan. Pembentukan populasi dasar untuk kegiatan seleksi dilakukan dengan memijahkan secara massal induk ikan mas yang terdiri atas 20 induk betina dan 21 induk jantan yang dikoleksi dari daerah Punten, Kepanjen (delapan betina dan enam jantan), Kediri (tujuh betina dan 12 jantan), Sragen (27 betina dan 10 jantan), dan Blitar (15 betina dan 11 jantan). Larva umur 10 hari dipelihara selama empat bulan. Selanjutnya dilakukan penjarangan sebesar 50% dan benih dipelihara selama 14 bulan untuk dilakukan seleksi dengan panduan hasil sampling 250 ekor individu setiap populasi. Seleksi terhadap calon induk dilakukan saat umur 18 bulan pada populasi jantan dan betina secara terpisah dengan memilih berdasarkan 10% bobot ikan yang terbaik. Calon induk yang terseleksi kemudian dipelihara hingga matang gonad, kemudian dipilih sebanyak 150 pasang dan dipijahkan secara massal. Didapatkan respons positif dari hasil seleksi berdasarkan bobot ikan, yaitu 49,89 g atau 3,66% (populasi ikan jantan) dan 168,47 g atau 11,43% (populasi ikan betina). Nilai heritabilitas untuk bobot ikan adalah 0,238 (jantan) dan 0,505 (betina).Punten carp breeding programs were carried out by individual selection for body weight trait. The base population for selection activities were conducted by mass breeding of parent consisted of 20 female and 21 male collected from area Punten, eight female and six male (Kepanjen), seven female and 12 male (Kediri), 27 female and 10 male (Sragen), 15 female and 11 male (Blitar). Larvae 10 days old reared for four moths. Then after spacing out 50% of total harvest, the offspring reared for 14 months for selection activity based on the sampling of 250 individual each population. Selection of broodstock candidates performed since 18 months age on male and female populations separately by selecting based on 10% of fish with best body weight. Candidates selected broodstocks were then maintained until mature. In oder to produce the next generation 150 pairs were sets and held for mass spawning. The results revealed that selection response were positive, 49.89 g (3.66%) for male and 168.47 (11.43%) for female. Heritability for body weight is 0.238 (male) and 0.505 (female).

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Combining metabolomic and transcriptomic approaches to assess and improve crop quality traits

CABI Agriculture and Bioscience ◽

10.1186/s43170-020-00021-8 ◽

2021 ◽

Vol 2 (1) ◽

Author(s):

Delphine M. Pott ◽

Sara Durán-Soria ◽

Sonia Osorio ◽

José G. Vallarino

Keyword(s):

Quality Trait ◽

Quality Traits ◽

Crop Species ◽

Breeding Programs ◽

Crop Quality ◽

Crop Varieties ◽

New Genes ◽

Technical Advances ◽

Health Promoting ◽

Selection Of

AbstractPlant quality trait improvement has become a global necessity due to the world overpopulation. In particular, producing crop species with enhanced nutrients and health-promoting compounds is one of the main aims of current breeding programs. However, breeders traditionally focused on characteristics such as yield or pest resistance, while breeding for crop quality, which largely depends on the presence and accumulation of highly valuable metabolites in the plant edible parts, was left out due to the complexity of plant metabolome and the impossibility to properly phenotype it. Recent technical advances in high throughput metabolomic, transcriptomic and genomic platforms have provided efficient approaches to identify new genes and pathways responsible for the extremely diverse plant metabolome. In addition, they allow to establish correlation between genotype and metabolite composition, and to clarify the genetic architecture of complex biochemical pathways, such as the accumulation of secondary metabolites in plants, many of them being highly valuable for the human diet. In this review, we focus on how the combination of metabolomic, transcriptomic and genomic approaches is a useful tool for the selection of crop varieties with improved nutritional value and quality traits.

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Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations

BMC Plant Biology ◽

10.1186/s12870-021-03061-y ◽

2021 ◽

Vol 21 (1) ◽

Author(s):

Nicole Pretini ◽

Leonardo S. Vanzetti ◽

Ignacio I. Terrile ◽

Guillermo Donaire ◽

Fernanda G. González

Keyword(s):

Doubled Haploid ◽

Marker Assisted Selection ◽

Triticum Aestivum L ◽

Physiological Model ◽

Yield Potential ◽

Breeding Programs ◽

Per Se ◽

Genomic Regions ◽

Fertility Traits ◽

Selection Of

Abstract Background In breeding programs, the selection of cultivars with the highest yield potential consisted in the selection of the yield per se, which resulted in cultivars with higher grains per spike (GN) and occasionally increased grain weight (GW) (main numerical components of the yield). In this study, quantitative trait loci (QTL) for GW, GN and spike fertility traits related to GN determination were mapped using two doubled haploid (DH) populations (Baguette Premium 11 × BioINTA 2002 and Baguette 19 × BioINTA 2002). Results In total 305 QTL were identified for 14 traits, out of which 12 QTL were identified in more than three environments and explained more than 10% of the phenotypic variation in at least one environment. Eight hotspot regions were detected on chromosomes 1A, 2B, 3A, 5A, 5B, 7A and 7B in which at least two major and stable QTL sheared confidence intervals. QTL on two of these regions (R5A.1 and R5A.2) have previously been described, but the other six regions are novel. Conclusions Based on the pleiotropic analysis within a robust physiological model we conclude that two hotspot genomic regions (R5A.1 and R5A.2) together with the QGW.perg-6B are of high relevance to be used in marker assisted selection in order to improve the spike yield potential. All the QTL identified for the spike related traits are the first step to search for their candidate genes, which will allow their better manipulation in the future.

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Identification of the Optimum Environments for the High Yield and Quality Traits of Lentil Genotypes Evaluated in Multi-Location Trials

Sustainability ◽

10.3390/su13158247 ◽

2021 ◽

Vol 13 (15) ◽

pp. 8247

Author(s):

Dimitrios N. Vlachostergios ◽

Christos Noulas ◽

Anastasia Kargiotidou ◽

Dimitrios Baxevanos ◽

Evangelia Tigka ◽

...

Keyword(s):

Crude Protein ◽

Agronomic Traits ◽

High Yield ◽

Breeding Programs ◽

Growing Seasons ◽

Yield And Quality ◽

Food And Feed ◽

Superior Genotypes ◽

Selection Of ◽

The Ideal

Lentil is a versatile and profitable pulse crop with high nutritional food and feed values. The objectives of the study were to determine suitable locations for high yield and quality in terms of production and/or breeding, and to identify promising genotypes. For this reason, five lentil genotypes were evaluated in a multi-location network consisting of ten diverse sites for two consecutive growing seasons, for seed yield (SY), other agronomic traits, crude protein (CP), cooking time (CT) and crude protein yield (CPY). A significant diversification and specialization of the locations was identified with regards to SY, CP, CT and CPY. Different locations showed optimal values for each trait. Locations E4 and E3, followed by E10, were “ideal” for SY; locations E1, E3 and E7 were ideal for high CP; and the “ideal” locations for CT were E3 and E5, followed by E2. Therefore, the scope of the cultivation determined the optimum locations for lentil cultivation. The GGE-biplot analysis revealed different discriminating abilities and representativeness among the locations for the identification of the most productive and stable genotypes. Location E3 (Orestiada, Region of Thrace) was recognized as being optimal for lentil breeding, as it was the “ideal” or close to “ideal” for the selection of superior genotypes for SY, CP, CT and CPY. Adaptable genotypes (cv. Dimitra, Samos) showed a high SY along with excellent values for CP, CT and CPY, and are suggested either for cultivation in many regions or to be exploited in breeding programs.

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Genetic diversity and population structure of ridge gourd (Luffa acutangula) accessions in a Thailand collection using SNP markers

Scientific Reports ◽

10.1038/s41598-021-94802-4 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Grimar Abdiel Perez ◽

Pumipat Tongyoo ◽

Julapark Chunwongse ◽

Hans de Jong ◽

Anucha Wongpraneekul ◽

...

Keyword(s):

Genetic Diversity ◽

Population Structure ◽

Germplasm Collection ◽

Snp Markers ◽

Fixation Index ◽

Breeding Programs ◽

Total Fixation ◽

Unrooted Phylogenetic Tree ◽

Luffa Acutangula ◽

Selection Of

AbstractThis study explored a germplasm collection consisting of 112 Luffa acutangula (ridge gourd) accessions, mainly from Thailand. A total of 2834 SNPs were used to establish population structure and underlying genetic diversity while exploring the fruit characteristics together with genetic information which would help in the selection of parental lines for a breeding program. The study found that the average polymorphism information content value of 0.288 which indicates a moderate genetic diversity for this L. acutangula germplasm. STRUCTURE analysis (ΔK at K = 6) allowed us to group the accessions into six subpopulations that corresponded well with the unrooted phylogenetic tree and principal coordinate analyses. When plotted, the STRUCTURE bars to the area of collection, we observed an admixed genotype from surrounding accessions and a geneflow confirmed by the value of FST = 0.137. AMOVA based on STRUCTURE clustering showed a low 12.83% variation between subpopulations that correspond well with the negative inbreeding coefficient value (FIS = − 0.092) and low total fixation index (FIT = 0.057). There were distinguishing fruit shapes and length characteristics in specific accessions for each subpopulation. The genetic diversity and different fruit shapes in the L. acutangula germplasm could benefit the ridge gourd breeding programs to meet the demands and needs of consumers, farmers, and vegetable exporters such as increasing the yield of fruit by the fruit width but not by the fruit length to solve the problem of fruit breakage during exportation.

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Genomic Analysis, Progress and Future Perspectives in Dairy Cattle Selection: A Review

Animals ◽

10.3390/ani11030599 ◽

2021 ◽

Vol 11 (3) ◽

pp. 599

Author(s):

Miguel A. Gutierrez-Reinoso ◽

Pedro M. Aponte ◽

Manuel Garcia-Herreros

Keyword(s):

Dairy Cattle ◽

Production Efficiency ◽

Association Studies ◽

Phenotypic Traits ◽

Progeny Testing ◽

Genome Wide Association Studies ◽

Genetic Progress ◽

Breeding Programs ◽

Increased Risk ◽

Selection Of

Genomics comprises a set of current and valuable technologies implemented as selection tools in dairy cattle commercial breeding programs. The intensive progeny testing for production and reproductive traits based on genomic breeding values (GEBVs) has been crucial to increasing dairy cattle productivity. The knowledge of key genes and haplotypes, including their regulation mechanisms, as markers for productivity traits, may improve the strategies on the present and future for dairy cattle selection. Genome-wide association studies (GWAS) such as quantitative trait loci (QTL), single nucleotide polymorphisms (SNPs), or single-step genomic best linear unbiased prediction (ssGBLUP) methods have already been included in global dairy programs for the estimation of marker-assisted selection-derived effects. The increase in genetic progress based on genomic predicting accuracy has also contributed to the understanding of genetic effects in dairy cattle offspring. However, the crossing within inbred-lines critically increased homozygosis with accumulated negative effects of inbreeding like a decline in reproductive performance. Thus, inaccurate-biased estimations based on empirical-conventional models of dairy production systems face an increased risk of providing suboptimal results derived from errors in the selection of candidates of high genetic merit-based just on low-heritability phenotypic traits. This extends the generation intervals and increases costs due to the significant reduction of genetic gains. The remarkable progress of genomic prediction increases the accurate selection of superior candidates. The scope of the present review is to summarize and discuss the advances and challenges of genomic tools for dairy cattle selection for optimizing breeding programs and controlling negative inbreeding depression effects on productivity and consequently, achieving economic-effective advances in food production efficiency. Particular attention is given to the potential genomic selection-derived results to facilitate precision management on modern dairy farms, including an overview of novel genome editing methodologies as perspectives toward the future.

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Genetic Similarity of Avena sativa L. Varieties as an Example of a Narrow Genetic Pool of Contemporary Cereal Species

Plants ◽

10.3390/plants10071424 ◽

2021 ◽

Vol 10 (7) ◽

pp. 1424

Author(s):

Magdalena Cieplak ◽

Sylwia Okoń ◽

Krystyna Werwińska

Keyword(s):

Genetic Diversity ◽

Avena Sativa ◽

Genetic Similarity ◽

Breeding Programs ◽

Central European ◽

Cereal Species ◽

Genetic Pool ◽

Selection Of ◽

High Genetic Similarity

The assessment of the genetic diversity of cultivated varieties is a very important element of breeding programs. This allows the determination of the level of genetic differentiation of cultivated varieties, their genetic distinctiveness, and is also of great importance in the selection of parental components for crossbreeding. The aim of the present study was to determine the level of genetic diversity of oat varieties currently grown in Central Europe based on two marker systems: ISSR and SCoT. The research conducted showed that both these types of markers were suitable for conducting analyses relating to the assessment of genetic diversity. The calculated coefficients showed that the analyzed cultivars were characterized by a high genetic similarity. However, the UPGMA and PCoA analyses clearly indicated the distinctiveness of the breeding programs conducted in Central European countries. The high genetic similarity of the analyzed forms allow us to conclude that it is necessary to expand the genetic pool of oat varieties. Numerous studies show that landraces may be the donor of genetic variation.

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ADDITIONAL CRITERIA FOR SELECTION OF MALTING QUALITY IN BARLEY BREEDING

Canadian Journal of Plant Science ◽

10.4141/cjps76-131 ◽

1976 ◽

Vol 56 (4) ◽

pp. 805-809 ◽

Cited By ~ 2

Author(s):

V. M. BENDELOW

Keyword(s):

Specific Gravity ◽

Filtration Rate ◽

Sugar Content ◽

Reducing Sugar ◽

Malting Quality ◽

Breeding Programs ◽

Barley Breeding ◽

Sample Extraction ◽

Criteria For Selection ◽

Selection Of

A procedure that provides information on the suitability of barley for malting and, brewing purposes is described. Three parameters are measured: mash filtration rate, wort viscosity and wort-reducing sugar content, as maltose. Maltose is determined by an auto-analyzer method and this is a satisfactory alternative to the specific gravity procedure for the estimation of percent extract. The addition of these criteria to those already in use enables more discriminatory selection at early generations of barley-breeding programs. The technique requires only one sample extraction and 18 g of laboratory malt.

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Associations between morphological and agronomic characteristics in garlic crop

Horticultura Brasileira ◽

10.1590/s0102-053620190211 ◽

2019 ◽

Vol 37 (2) ◽

pp. 204-209

Author(s):

Valter C de Andrade Júnior ◽

Amanda G Guimarães ◽

Tiago D Firme ◽

Aline Aparecida A Costa ◽

Márcia Regina da Costa ◽

...

Keyword(s):

Path Analysis ◽

Total Yield ◽

Marketable Yield ◽

Breeding Programs ◽

Phenotypic Correlations ◽

Genotypic And Phenotypic Correlations ◽

Number Of Leaves ◽

Commercial Yield ◽

Selection Of ◽

Bulb Yield

ABSTRACT Correlations and path analysis between characteristics can aid the selection of important attributes in breeding programs. Thus, the objective of this work was to perform genotypic, phenotypic correlations and path analysis under commercial yield of garlic bulbs, depending on morphological and agronomic variables. The experiment was carried out in 2017 at the Universidade Federal dos Vales do Jequitinhonha e Mucuri and Universidade Federal de Lavras, using ten garlic genotypes, eight trials and two commercial cultivars, Caçador and Jonas. We evaluated: plant height; number of leaves, total bulb number; total bulb mass, total bulb yield, marketable bulb yield and number of cloves per bulb. The genotypic and phenotypic correlations were positive and significant between marketable yield of bulbs with bulb mass, total yield and number of cloves per bulb, indicating that selection based on these characteristics will help increase the yield of garlic. However, only the number of cloves per bulb had a direct effect and a relevant indirect effect on the marketable yield of garlic.

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