scholarly journals Isolation, Molecular Identification of Mycoplasma Putrefaciens Local Strains and Its Associated Pathological Lesions in Goats

2021 ◽  
Author(s):  
Muhammad Saeed ◽  
Farhan Anwar ◽  
Farhan Anwar Khan ◽  
Faiz Ur Rehman ◽  
Hayatullah Khan ◽  
...  
Keyword(s):  
Small Ruminants ◽  
Local Strain ◽  
Molecular Techniques ◽  
Control Measures ◽  
Effective Control ◽  
Clinical Samples ◽  
Histopathological Study ◽  
Limited Information ◽  
Northern Area ◽  
Pathological Lesions

Abstract Mycoplasma putrifaciens (Mp) is a dreadful pathogen that causes a severe, usually fatal disease in domestic goats known as MAKePS syndrome in small ruminants. The present lack of effective diagnostic and control measures leaves Pakistani farmers at perpetual great risk of financially disastrous MAKePS outbreaks. Thus far, very limited information is available on the detection and molecular characterization of the unique Mp strains prevalent in Pakistan. This study was proposed to apply modern molecular techniques to characterize endemic Mp isolates and their associated specific lesions in goats to devise an effective control strategies. For the collection of samples Northern areas of Pakistan were focused including Chitral, Gilgit and Swat. Samples were collected from Mycoplasma putrifaciens suspected animals (Chitral n=200, Gilgit n=200, Swat n=200). Clinical samples including nasal swab (NS) and synovial fluid (SF) from live animals (n=50), whereas pleural fluid (PF) and lungs samples from dead goats (n=50) were collected from each representative northern area of Pakistan. All samples were subjected to isolation of Mp local strain, while tissue samples were examined for pathological lesions. Culture positive PPLO broth was first confirmed for Mp by specific PCR. From Gilgit Baltistan 38.83% samples were found positive for Mp by PCR, whereas 25% and 19.38% samples from Chitral and Swat, respectively, were detected positive for Mp by generating an amplicon of 540 bp. The PCR positive PPLO broth samples were cultured on PPLO agar for isolation of Mp. A single colony with fried egg like appearance was picked and sub-cultured in PPLO broth for purification and later on confirmed with PCR. The Histopathological study of lungs showed that there was emphysema, rupture of alveoli, in bronchioles ciliated epithelium were sloughed and infiltration of leukocytes. We successfully isolated and purified Mp local strain prevalent in northern area of Pakistan. The Mp was detected prevalent in 27.76% goats of Northern regions by PCR. This study laid down a foundation to develop an effective diagnostic kit and vaccine against Mp infection in Goats.

scholarly journals Molecular Identification of Mushroom Species in Italy: An Ongoing Project Aimed at Reinforcing the Control Measures of an Increasingly Appreciated Sustainable Food

2020 ◽  
Vol 13 (1) ◽  
pp. 238
Author(s):  
Alice Giusti ◽  
Enrica Ricci ◽  
Laura Gasperetti ◽  
Marta Galgani ◽  
Luca Polidori ◽  
...  
Keyword(s):  
Selection Process ◽  
Winning Strategy ◽  
Control Measures ◽  
Effective Control ◽  
Mushroom Poisoning ◽  
Clinical Samples ◽  
Similar Species ◽  
Mushroom Species ◽  
Ongoing Research ◽  
Genotypic Analysis

Proper investment in mushroom production (farming and wild mushroom picking activities) may represent a winning strategy for many countries, including Italy, to better face the problems of food security and environmental impact, and to break away from imports, enhancing the local products. However, the risk related to the consumption of poisoning species requires governments to implement or reinforce effective control measures to protect consumers. Mushroom identification by phenotype observation is hardly applicable if morphologically-similar species, non-whole specimens, or clinical samples are involved. Genotypic analysis is a valid alternative. An ongoing research project involving the Experimental Zooprophylactic Institute of Lazio and Tuscany, the regional Mycological Inspectorate, the Tuscany Mycological Groups Association, and the Department of Veterinary Sciences of the University of Pisa aims to reinforce the collaboration among institutions for the management of mushroom poisoning. The core’s project aims to develop an internal genetic database to support the identification of wild and cultivated mushroom species in the Italian territory. The database will include Internal Transcribed Spacer (ITS) sequences retrieved from official databases (the NCBI GenBank and the BOLD system) which are considered to be reliable, after a proper selection process, and sequences from specimens collected directly and identified by expert mycologists. Once it is validated, the database will be available and further implementable by the official network of national laboratories.

Morphological and molecular characterization of Paramphistomum epiclitum of small ruminants

2018 ◽  
Vol 63 (3) ◽  
pp. 586-594 ◽  
Author(s):  
Mehul M. Jadav ◽  
Niranjan Kumar ◽  
Bhupamani Das ◽  
Jaesh B. Solanki
Keyword(s):  
Small Ruminants ◽  
Gc Content ◽  
Dorsal Surface ◽  
Immature Stage ◽  
The Body ◽  
Control Measures ◽  
Effective Control ◽  
Evolutionary Divergence ◽  
Nucleotide Polymorphisms ◽  
Paramphistomum Epiclitum

Abstract Morphological and molecular identification can pave the way to design the most effective control measures against the Paramphistomum epiclitum in small ruminants. Morphology of the flukes had described the features of Paramphistomum genus. Body was conical with concave ventral and convex dorsal surface, tegumental spines all around the body in the immature stage, terminal funnel shape oral sucker, sub-terminal acetabulum, blind caeca with a serpentine course touching the anterior level of the acetabulum. Vitelline glands were at the lateral margins of the body extended from the pharynx to the posterior sucker. Testes were lobed and tandem, wavy post-testicular uterus and genital pore behind intestinal bifurcation. Sequence analyses of internal transcribed spacer (ITS)-2+ (PCR products of approximately 500 bp) of 10 flukes yielded 2 genotypes, Navsari isolate 1 and 2. In BLAST analysis, ITS-2+ genotypes were 97.3–99% similar with published sequences (KF564870, JF834888, KF642983 and JX678254) of P. epiclitum of Paramphistomatidae. Two genotypes depicted 4 single nucleotide polymorphisms (NPs) in the form of transitions (C-T at 10 and 18; G-A at 255; A-G at 367 locus), 1 triple NPs (CGT-GAA between 21–23 loci) and missing A base at codon 40 in the genotype 1. Average AT and GC content was 49.61% and 50.38%, respectively. Trees topology inferred by Neighbor Joining and Maximum Likelihood methods of ITS2+ of trematodes were similar, with small difference of bootstrap values. Navsari genotypes formed a tight cluster with the P. epiclitum, originated from different location with high bootstrap value and 0.004–0.011 estimated evolutionary divergence.

scholarly journals An epidemiological investigation of gastrointestinal parasites of small ruminants in Tangail, Bangladesh

2017 ◽  
Vol 15 (2) ◽  
Author(s):  
Md Atikur Rahman ◽  
Sharmin Shahid Labony ◽  
Anita Rani Dey ◽  
Mohammad Zahangir Alam
Keyword(s):  
Small Ruminant ◽  
Parasitic Infection ◽  
Small Ruminants ◽  
Gastrointestinal Parasites ◽  
Control Measures ◽  
Effective Control ◽  
Infection Rates ◽  
Eimeria Spp ◽  
Stool Samples ◽  
Fasciola Spp

Gastrointestinal (GI) parasitism is anegregious problem in small ruminant production system due to is impact on growth and associated cost of control measures. An epidemiological study was conducted to investigate the prevalence of gastrointestinal parasites of small ruminants from different areas of Madhupur, Tangail. The stool samples were collected from a total of 426 goats and sheep from study areas. Specimens were subjected to Stoll’s ova counting technique and the overall prevalence of gastrointestinal parasitic infection was found 63.4%. Overall prevalence of nematodes, cestodes, trematodes and protozoa was 52.11%, 2.11%, 36.62% and 10.33%, respectively. The prevalence of parasites were variable with Fasciola spp. (8.45%), Paramphistomum spp. (28.17%), Monieziaspp. (2.11%), Haemonchus spp. (31.22%), Trichurisspp. (1.17%), Oesophagostomum spp. (10.80%), Strongyloides spp. (4.93%), Trichostrongylus spp. (2.35%), Bunostomum spp. (1.64%), Eimeria spp. (24%) and Balantidium spp. (6.34%). Parasitic ova counts in male and female exhibited no significant variations (p>0.05) between them. The infection was significantly higher (65.11%) in adult than in young (58.09%). No significant (p>0.05) variation was observed in infection rates between goats (64.09%) and sheep (60.67%). Seasonal variation was found significant between rainy (72.44%), winter (56.72%) and summer (61.82%) seasons. Animals with poor body conditions (74.67%) were mostly affected compared to those with moderate (62.38%) and good (39.00%) body conditions. Further attempt is necessary for a structured surveillance and monitoring of GI parasites to formulate effective control measures.J. Bangladesh Agril. Univ. 15(2): 255-259, December 2017

scholarly journals Leishmania infantum, Dirofilaria spp. and other endoparasite infections in kennel dogs in central Italy

Parasite ◽  
2018 ◽  
Vol 25 ◽  
pp. 2 ◽  
Author(s):  
Federica Sauda ◽  
Livia Malandrucco ◽  
Gladia Macrì ◽  
Manuela Scarpulla ◽  
Claudio De Liberato ◽  
...  
Keyword(s):  
Risk Factors ◽  
Leishmania Infantum ◽  
Intestinal Parasites ◽  
Central Italy ◽  
Multivariable Analysis ◽  
Giardia Duodenalis ◽  
Toxocara Canis ◽  
Molecular Techniques ◽  
Control Measures ◽  
Effective Control

Prevalence and risk factors of Leishmania infantum, Dirofilaria spp. and other potentially zoonotic or canine-specific endoparasite infections were assessed in 639 kennel dogs from central Italy. To this end, individual blood and fecal samples were examined using parasitological, immunological and molecular techniques. The presence of compatible clinical pictures, as well as age and gender were considered as putative risks factors. To evaluate risk factors, multivariable analysis with logistic regression and univariable analysis with a Chi square test and a Fischer’s exact test were performed. Overall, 52.6% of dogs (95% CI 48.6-56.5) were found positive, while 39.6% of dogs (95% CI 35.8-43.5) were infected by potentially zoonotic species. Leishmania infantum and Dirofilaria repens showed prevalences of 2.5% (95% CI 1.5-4.1) and 2.8% (95% CI 1.7-4.5), respectively. The prevalence of cardiorespiratory parasites was 7.8% (95% CI 5.9-10.3) and included the species Angiostrongylus vasorum, Eucoleus aerophilus, Eucoleus boehmi and D. immitis; the latter showed a prevalence of 0.2% (95% CI 0.001-1). Intestinal parasites were significantly prevalent (38.8%, 95% CI 35-42.7) and they consisted mainly of species of major zoonotic concern, including ancylostomatids, Toxocara canis, Giardia duodenalis, Dipylidium caninum, Taeniidae, Strongyloides stercoralis and Cryptosporidium parvum. Endoparasites were significantly prevalent in clinically suspected dogs. Leishmania infantum and cardiorespiratory nematodes were prevalent in older dogs, while intestinal parasites were prevalent in younger dogs. Results show high dog and public health risks in kennels in central Italy, and suggest the need for more effective control measures.

scholarly journals Antibiotic Susceptibility Patterns, Biofilm Formation and esp Gene among Clinical Enterococci: Is There Any Association?

2019 ◽  
Vol 16 (18) ◽  
pp. 3439 ◽  
Author(s):  
Poh Leng Weng ◽  
Ramliza Ramli ◽  
Rukman Awang Hamat
Keyword(s):  
Antibiotic Susceptibility ◽  
Biofilm Formation ◽  
Cross Sectional Study ◽  
Control Measures ◽  
Effective Control ◽  
Clinical Samples ◽  
Biochemical Tests ◽  
Cross Sectional ◽  
Antibiotic Susceptibility Patterns ◽  
Susceptibility Patterns

Enterococci are commonly found in humans, animals and environments. Their highly adaptive mechanisms are related to several virulent determinants and their ability to resist antibiotics. Data on the relationship between the esp gene, biofilm formation and antibiotic susceptibility profiles may differ between countries. This cross-sectional study was conducted to determine the proportion of esp gene and biofilm formation among Enterococcus faecalis and Enterococcus faecium clinical isolates. We also investigated the possible association between the esp gene with antibiotic susceptibility patterns and biofilm formation. The isolates were collected from clinical samples and identified using biochemical tests and 16SRNA. Antibiotic susceptibility patterns and a biofilm assay were conducted according to the established guidelines. Molecular detection by PCR was used to identify the esp gene using established primers. In total, 52 and 28 of E. faecalis and E. faecium were identified, respectively. E. faecium exhibited higher resistance rates compared to E. faecalis as follows: piperacillin/tazobactam (100% versus 1.9%), ampicillin (92.8% versus 1.9%), high-level gentamicin resistance (HLGR) (89.3% versus 25.0%) and penicillin (82.1% versus 7.7%). E. faecium produced more biofilms than E. faecalis (59.3% versus 49.0%). E. faecium acquired the esp gene more frequently than E. faecalis (78.6% versus 46.2%). Interestingly, the associations between ampicillin and tazobactam/piperacillin resistance with the esp gene were statistically significant (X2 = 4.581, p = 0.027; and X2 = 6.276, p = 0.012, respectively). Our results demonstrate that E. faecium exhibits high rates of antimicrobial resistance, esp gene acquisition and biofilm formation. These peculiar traits of E. faecium may have implications for the management of enterococcal infections in hospitals. Thus, concerted efforts by all parties in establishing appropriate treatment and effective control measures are warranted in future.

scholarly journals The medically important aerobic actinomycetes: epidemiology and microbiology.

1994 ◽  
Vol 7 (3) ◽  
pp. 357-417 ◽  
Author(s):  
M M McNeil ◽  
J M Brown
Keyword(s):  
Animal Species ◽  
Antimicrobial Agents ◽  
Susceptibility Testing ◽  
Molecular Techniques ◽  
Control Measures ◽  
Effective Control ◽  
Transplant Recipients ◽  
Pathogenic Potential ◽  
Immunodeficiency Virus ◽  
Aerobic Actinomycetes

The aerobic actinomycetes are soil-inhabiting microorganisms that occur worldwide. In 1888, Nocard first recognized the pathogenic potential of this group of microorganisms. Since then, several aerobic actinomycetes have been a major source of interest for the commercial drug industry and have proved to be extremely useful microorganisms for producing novel antimicrobial agents. They have also been well known as potential veterinary pathogens affecting many different animal species. The medically important aerobic actinomycetes may cause significant morbidity and mortality, in particular in highly susceptible severely immunocompromised patients, including transplant recipients and patients infected with human immunodeficiency virus. However, the diagnosis of these infections may be difficult, and effective antimicrobial therapy may be complicated by antimicrobial resistance. The taxonomy of these microorganisms has been problematic. In recent revisions of their classification, new pathogenic species have been recognized. The development of additional and more reliable diagnostic tests and of a standardized method for antimicrobial susceptibility testing and the application of molecular techniques for the diagnosis and subtyping of these microorganisms are needed to better diagnose and treat infected patients and to identify effective control measures for these unusual pathogens. We review the epidemiology and microbiology of the major medically important aerobic actinomycetes.

Characterizing the effectiveness of COVID-19 mitigation measures: A data-centric approach (Preprint)

2020 ◽  
Author(s):  
Lukman Olagoke ◽  
Ahmet E. Topcu
Keyword(s):  
Control Measure ◽  
Control Measures ◽  
World Health ◽  
Mitigation Measures ◽  
Effective Control ◽  
The World ◽  
Decision Making Processes ◽  
And Performance ◽  
Health Organization ◽  
The Impact

BACKGROUND COVID-19 represents a serious threat to both national health and economic systems. To curb this pandemic, the World Health Organization (WHO) issued a series of COVID-19 public safety guidelines. Different countries around the world initiated different measures in line with the WHO guidelines to mitigate and investigate the spread of COVID-19 in their territories. OBJECTIVE The aim of this paper is to quantitatively evaluate the effectiveness of these control measures using a data-centric approach. METHODS We begin with a simple text analysis of coronavirus-related articles and show that reports on similar outbreaks in the past strongly proposed similar control measures. This reaffirms the fact that these control measures are in order. Subsequently, we propose a simple performance statistic that quantifies general performance and performance under the different measures that were initiated. A density based clustering of based on performance statistic was carried out to group countries based on performance. RESULTS The performance statistic helps evaluate quantitatively the impact of COVID-19 control measures. Countries tend show variability in performance under different control measures. The performance statistic has negative correlation with cases of death which is a useful characteristics for COVID-19 control measure performance analysis. A web-based time-line visualization that enables comparison of performances and cases across continents and subregions is presented. CONCLUSIONS The performance metric is relevant for the analysis of the impact of COVID-19 control measures. This can help caregivers and policymakers identify effective control measures and reduce cases of death due to COVID-19. The interactive web visualizer provides easily digested and quick feedback to augment decision-making processes in the COVID-19 response measures evaluation. CLINICALTRIAL Not Applicable

scholarly journals The SCCmec Types and Antimicrobial Resistance among Methicillin-Resistant Staphylococcus Species Isolated from Dogs with Superficial Pyoderma

2021 ◽  
Vol 8 (5) ◽  
pp. 85
Author(s):  
Yuttana Chanayat ◽  
Areerath Akatvipat ◽  
Jeff B. Bender ◽  
Veerasak Punyapornwithaya ◽  
Tongkorn Meeyam ◽  
...  
Keyword(s):  
Antimicrobial Susceptibility ◽  
Sccmec Type ◽  
Small Animal ◽  
Control Measures ◽  
Infection Prevention And Control ◽  
Clinical Samples ◽  
Biochemical Tests ◽  
Methicillin Resistant ◽  
Type V ◽  
Staphylococcal Cassette Chromosome

This study characterizes clinical methicillin-resistant staphylococcal (MRS) isolates obtained from superficial pyoderma infections in dogs. Our interest was to determine the staphylococcal cassette chromosome mec (SCCmec) type and the antimicrobial susceptibility among MRS isolates from clinical cases. Skin swabs were collected and cultured. Staphylococcus species were identified and characterized with biochemical tests and MALDI-TOF-MS and antimicrobial susceptibility testing by disk diffusion. mecA detection and staphylococcal cassette chromosome mec (SCCmec) typing were achieved by PCR. Of the 65 clinical samples, 56 (86.2%) staphylococcal infections were identified. Twelve (21%) of 56 isolates were MRS infections. All MRS isolates were multidrug resistant. The ccrC and class-C2 mec, which were SCCmec type V, were the most prevalent (66.7%) among the 12 MRS isolates. The predominant SCCmec type V was found in S. aureus, S. intermedius group, S. lentus, S. xylosus, and S. arlettae. Treatment failure is a concern with the emergence of highly resistant MRS in dogs associated with superficial pyoderma. The detection of type V SCCmec MRS has previously been reported among veterinarians and dog owners but not in Northern Thailand. These infections serve as a reminder to improve infection prevention and control measures including reducing environmental contamination and potential zoonotic exposures to MRS. In addition, educational awareness of these risks in small animal hospitals needs to be increased among veterinary hospital staff, clients, and patients.

scholarly journals Development and validation of a multiplex qPCR assay for detection and relative quantification of HPV16 and HPV18 E6 and E7 oncogenes

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Alexia Bordigoni ◽  
Anne Motte ◽  
Hervé Tissot-Dupont ◽  
Philippe Colson ◽  
Christelle Desnues
Keyword(s):  
Limit Of Detection ◽  
Quantitative Polymerase Chain Reaction ◽  
Human Papillomaviruses ◽  
Molecular Techniques ◽  
Clinical Samples ◽  
Gene Encoding ◽  
Hpv Dna ◽  
E6 And E7 ◽  
High Risk Hpv ◽  
Development And Validation

AbstractHuman papillomaviruses (HPV) play a key role in promoting human anogenital cancers. Current high-risk HPV screening or diagnosis tests involve cytological or molecular techniques mostly based on qualitative HPV DNA detection. Here, we describe the development of a rapid quantitative polymerase chain reaction (qPCR) detection test of HPV16 and HPV18 oncogenes (E6 and E7) normalized on human gene encoding GAPDH. Optimized qPCR parameters were defined, and analytical specificities were validated. The limit of detection was 101 for all genes tested. Assay performances were evaluated on clinical samples (n = 96). Concordance between the Xpert HPV assay and the triplex assay developed here was 93.44% for HPV16 and 73.58% for HPV18. HPV co-infections were detected in 15 samples. The systems developed in the present study can be used in complement to traditional HPV tests for specifically validating the presence of HPV16 and/or HPV18. It can also be used for the follow-up of patients with confirmed infection and at risk of developing lesions, through the quantification of E6 and E7 oncogene expression (mRNA) normalized on the GAPDH expression levels.

scholarly journals Global Distribution and Genetic Heterogeneity of Border Disease Virus

Viruses ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 950
Author(s):  
Cecilia Righi ◽  
Stefano Petrini ◽  
Ilaria Pierini ◽  
Monica Giammarioli ◽  
Gian Mario De Mia
Keyword(s):  
Disease Virus ◽  
Significant Risk ◽  
Small Ruminants ◽  
Control Measures ◽  
Interspecies Transmission ◽  
Economic Losses ◽  
Border Disease Virus ◽  
Diarrhea Virus ◽  
Geographical Regions ◽  
Border Disease

Border disease virus (BDV) belongs to the genus Pestivirus of the family Flaviviridae. Interspecies transmission of BDV between sheep, cattle, and pigs occurs regularly, sometimes making diagnosis a challenge. BDV can yield substantial economic losses, including prenatal and postnatal infections in lambs, which are the primary source of infection and maintenance of the virus in the population. Since BDV is antigenically and genetically related to bovine viral diarrhea virus (BVDV), it might pose a significant risk to cattle, influencing BVDV eradication campaigns. Similarly, the presence of BDV in swine herds due to pestivirus spillover between small ruminants and pigs might cause uncertainty in classical swine fever virus (CSFV) diagnostics. Therefore, knowledge of BDV epidemiology in different geographical regions will help prevent its spread and optimize control measures. Previous epidemiological studies have shown that various BDV genotypes are predominant in different countries. This review provides an overview of the spread of BDV world-wide in different host species.

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