Antimicrobial susceptibility pattern of bacteria isolated from urinary tract infection in Federal Teaching Hospital Ido Ekiti

The problem of antibiotic resistance remains a major concern among the patients and health care provider. This study was carried out therefore to determine the antibiotics resistance susceptibility pattern bacteria with urinary tract infections among patients attending Federal Teaching Hospital Ido-Ekiti. A total of 200 patients suspected of having a UTI were recruited for the study. The urine samples were cultured on Cysteine Lactose Electrolyte Deficient Agar (CLED) and the colonies were identified using colonial morphology and biochemical test. Antibiotics susceptibility testing was carried out using Kirby-Bauer disk diffusion techniques. Out of 200 urine samples analysed 82 (41.0%) yielded significant bacteria growth belonging to 4 different genera with Escherichia coli having the highest isolation rate 42 (81.2%) followed by Pseudomonas aeruginosa 16 (19.5%), Staphylococcus aureus 14 (17.0%) and Klebsiella aerogenes 10 (12.1%). Female patients had the highest isolation rate of 48 (58.5%) compare to their male counterpart with 34 (41.5%) isolation rate. Age group 31-40yrs had the highest isolation, rate of 20 (24.4%). The antibiotic resistance pattern exhibited by all the bacteria ranged from 14.3% to 90.5%. Gentamicin exhibited the least resistance rate. However, antibiotics resistance is frightening; therefore, there is a need for antibiogram before prescription of antibiotics for the treatment of urinary tract infection.

Surveillance of avian influenza viruses from 2009 to 2013 in South Korea

Avian influenza viruses (AIVs) are carried by wild migratory waterfowl across migratory flyways. To determine the strains of circulating AIVs that may pose a risk to poultry and humans, regular surveillance studies must be performed. Here, we report the surveillance of circulating AIVs in South Korea during the winter seasons of 2009–2013. A total of 126 AIVs were isolated from 7942 fecal samples from wild migratory birds, with a total isolation rate of 1.59%. H1‒H7 and H9‒H11 hemagglutinin (HA) subtypes, and N1‒N3, N5, and N7‒N9 neuraminidase (NA) subtypes were successfully isolated, with H6 and N2 as the most predominant HA and NA subtypes, respectively. Sequence identity search showed that the HA and NA genes of the isolates were highly similar to those of low-pathogenicity influenza strains from the East Asian-Australasian flyway. No match was found for the HA genes of high-pathogenicity influenza strains. Thus, the AIV strains circulating in wild migratory birds from 2009 to 2013 in South Korea likely had low pathogenicity. Continuous surveillance studies such as this one must be performed to identify potential precursors of influenza viruses that may threaten animal and human health.

Survey of low pathogenic avian influenza viruses in live poultry markets in Guangxi Province, Southern China, 2016–2019

Low pathogenic avian influenza viruses (LPAIVs) have been widespread in poultry and wild birds throughout the world for many decades. LPAIV infections are usually asymptomatic or cause subclinical symptoms. However, the genetic reassortment of LPAIVs may generate novel viruses with increased virulence and cross-species transmission, posing potential risks to public health. To evaluate the epidemic potential and infection landscape of LPAIVs in Guangxi Province, China, we collected and analyzed throat and cloacal swab samples from chickens, ducks and geese from the live poultry markets on a regular basis from 2016 to 2019. Among the 7,567 samples, 974 (12.87%) were LPAIVs-positive, with 890 single and 84 mixed infections. Higher yearly isolation rates were observed in 2017 and 2018. Additionally, geese had the highest isolation rate, followed by ducks and chickens. Seasonally, spring had the highest isolation rate. Subtype H3, H4, H6 and H9 viruses were detected over prolonged periods, while H1 and H11 viruses were detected transiently. The predominant subtypes in chickens, ducks and geese were H9, H3, and H6, respectively. The 84 mixed infection samples contained 22 combinations. Most mixed infections involved two subtypes, with H3 + H4 as the most common combination. Our study provides important epidemiological data regarding the isolation rates, distributions of prevalent subtypes and mixed infections of LPAIVs. These results will improve our knowledge and ability to control epidemics, guide disease management strategies and provide early awareness of newly emerged AIV reassortants with pandemic potential.

An Evaluation of a Simplified Impression Membrane Sampling Method for the Diagnosis of Microbial Keratitis

The purpose of this study was to compare bacterial isolation rate using a corneal impression membrane (CIM) and a sharp instrument for obtaining corneal samples from patients with suspected microbial keratitis (MK). Data was retrospectively collected for all patients that had corneal samples taken for presumed MK between May 2014 and May 2020. Prior to May 2017 samples were collected by scraping the edges of the ulcer with a blade. From May 2017, samples were collected by placing a CIM (Millicell cell culture insert) against the ulcer. All corneal samples were processed using the same conventional diagnostic culture method. A total of 3099 corneal samples were included, of which 1214 (39.2%) were corneal scrapes and 1885 (60.9%) CIMs. Microorganisms were isolated from 235 (19.4%) and 1229 (65.2%) cases using a corneal scrape and CIM, respectively (p < 0.001). Of routinely described pathogenic microorganisms, there were significant increases in the isolations of S. aureus (2.4% to 11.3%) and Serratia (0.5% to 1.7%) using the CIM and no significant changes in the isolations of S. pneumoniae and P. aeruginosa. No significant differences were seen between the isolation rates of fungi or Acanthamoeba species. There was a significant increase in the isolation rates of other Streptococcal species (0.7% to 6.9%) and CNS species, specifically, S. epidermidis (2.1% to 26.2%), S. capitis (0.4% to 2.6%) and S. warneri (0.3% to 1.6%) using the CIM. The simplified CIM sampling method is an effective method for collecting corneal samples from patients with presumed MK in clinical practice.

STUDY THE ISOLATION RATE AND ANTIBIOTIC RESISTANCE OF ACINETOBACTER SPP IN THE INTENSIVE CARE DEPARTMENT THANH NHAN HOSPITAL

Objectives: To describe the isolation rate and antibiotic status of Acinetobacter ssp hospital-acquired bacteria in the intensive care unit. Methods: 1434 patient samples isolated patient samples, cultured, performed antibiogram, described cross-section. Results: 109/331 strains of Acinetobacter spp were isolated (32.9%) and mainly from respiratory specimens, catheters (76.1% and 14.7%). Acinetobacter spp has a high degree of antibiotic resistance to most of the antibiotics Ceftazidime: 91.7%, Cefepime 91.7%, gentamycine 91.7%, Amikacin 83.3%, Imipenem and Meropenem 75%, still sensitive 100 % with antibiotics Polimycin B and Colistin.

Dynamic Design of the Test Bench of Electric Vehicle Motor

In order to avoid the resonance of the bench and the laboratory floor, it is necessary to carry out vibration analysis and dynamic design on the motor test bench. Firstly, the lightweight target and the constraint conditions related to the rigid body modal frequency and elastic modal frequency of the platform are set, and the structure of the platform is optimized. Then, the three-dimensional model of the whole bench is built and the finite element is meshed to carry out modal analysis. The optimized modal analysis results show that the natural frequencies of the designed bench will not be excited by various vibration excitation forces at the set speed of motor test, the vibration isolation rate of the lower bracket reaches more than 52% (except that the vibration isolation rate of the lower bracket is 36.30% at 1000 rpm), which effectively eliminates the resonance problem between the bench and foundation during motor NVH test, and the normal performance of motor and NVH test can be effectively ensured.

Prevalence of symptomatic urinary tract infection and bacterial spectrum of diabetic and non-diabetic patients at the two teaching hospitals in Enugu, Nigeria

Background: Diabetes mellitus is a group of metabolic disorder characterized by relative or absolute lack of insulin. When this condition is not properly managed, it can lead to complications that make diabetic patients vulnerable to urinary tract infections (UTI). The objectives of this study are to determine the prevalence of microbiologically confirmed UTI and the spectrum of uropathogens in diabetic and non-diabetic patients with clinical features of UTI attending the two tertiary hospitals in Enugu State, Nigeria. Methodology: Clean catch specimen of single mid-stream urine sample was collected from each of 60 (22 males, 38 females) diabetic and 60 (22 males, 38 females) non-diabetic patients enrolled using stratified random sampling method. The samples were cultured on standard microbiological culture media (MacConkey and Blood agar plates) and incubated aerobically at 37◦C for 24 hours. Plates with significant bacteria growth (>105 CFU/ml) were processed further for bacterial identification using conventional biochemical test scheme. Antibiotic susceptibility test (AST) of each isolate to 17 selected antibiotics was performed by the modified disc diffusion method. Results: Of the total 120 patients enrolled, 101 had bacterial pathogens isolated from their voided urine samples; 51 of 60 (85.0%) diabetics and 50 of 60 (83.3%) non-diabetics (p=0.802). Bacteria were isolated in 59.1% (13/22) of diabetic and 54.5% (12/22) of non-diabetic male patients compared to 100% (38/38) isolation rate in diabetic and non-diabetic female patients. The most frequently isolated bacteria in the diabetic patients were Proteus spp (18.6%), Klebsiella spp (16.9%) and Escherichia coli (15.5%) while the most frequently isolated bacteria among the non-diabetic patients were E. coli (30.0%), Proteus spp (26.3%) and Enterobacter spp (14.0%). Apart from Klebsiella spp which was more frequently isolated from the diabetic (16.9%) than non-diabetic patients (6%) (p=0.039), the frequency other bacterial pathogen isolation such as Proteus spp, E. coli, Enterobacter spp, Pseudomonas aeruginosa, Staphylococcus aureus and Enterococcus spp was not significantly different between the two population groups (p>0.05). The Gram-positive and Gram-negative bacteria were highly sensitive to imipenem in both diabetic and non-diabetic patients, but the isolates from both study groups exhibited low susceptibility to amoxicillin, nitrofuran- toin, cefixime and cefuroxime. Conclusion: Although the overall frequency of bacterial pathogen isolation in the diabetic and non-diabetic patients was not significantly different, females had a higher pathogen isolation rate than the males, and diabetic females had a higher frequency of polymicrobial infections compared to non-diabetic females and the male population. The high antimicrobial resistance of the isolated bacteria pathogens underscores the need for clinical microbiology laboratory testings to optimize the management of UTI in diabetic patients. French title: Prévalence des infections urinaires symptomatiques et spectre bactérien des patients diabétiques et non diabétiques dans les deux hôpitaux universitaires d'Enugu, au Nigeria Contexte: Le diabète sucré est un groupe de troubles métaboliques caractérisés par un manque relatif ou absolu d'insuline. Lorsque cette condition n'est pas correctement gérée, elle peut entraîner des complications qui rendent les patients diabétiques vulnérables aux infections des voies urinaires (UTI). Les objectifs de cette étude sont de déterminer la prévalence des infections urinaires confirmées microbiologiquement et le spectre des uropathogènes chez les patients diabétiques et non diabétiques présentant des caractéristiques cliniques des infections urinaires fréquentant les deux hôpitaux tertiaires de l'État d'Enugu, au Nigeria. Méthodologie: Un échantillon de capture propre d'un seul échantillon d'urine à mi-jet a été prélevé sur chacun des 60 (22 hommes, 38 femmes) patients diabétiques et 60 (22 hommes, 38 femmes) patients non diabétiques inscrits à l'aide d'une méthode d'échantillonnage aléatoire stratifié. Les échantillons ont été cultivés sur des milieux de culture microbiologiques standard (plaques de gélose MacConkey et Blood) et incubés en aérobie à 37°C pendant 24 heures. Les plaques avec une croissance bactérienne significative (>105 CFU/ml) ont été traitées davantage pour l'identification bactérienne en utilisant un schéma de test biochimique conventionnel. Le test de sensibilité aux antibiotiques (AST) de chaque isolat à 17 antibiotiques sélectionnés a été réalisé par la méthode de diffusion sur disque modifiée. Résultats: Sur un total de 120 patients recrutés, 101 avaient des agents pathogènes bactériens isolés de leurs échantillons d'urine évacués; 51 des 60 (85,0%) diabétiques et 50 des 60 (83,3%) des non-diabétiques (p=0,802). Les bactéries ont été isolées chez 59,1% (13/22) des patients diabétiques et 54,5% (12/22) des hommes non diabétiques contre un taux d'isolement de 100% (38/38) chez les femmes diabétiques et non diabétiques. Les bactéries les plus fréquemment isolées chez les patients diabétiques étaient Proteus spp (18,6%), Klebsiella spp (16,9%) et Escherichia coli (15,5%) tandis que les bactéries les plus fréquemment isolées chez les patients non diabétiques étaient E. coli (30,0%), Proteus spp (26,3%) et Enterobacter spp (14,0%). Hormis Klebsiella spp qui était plus fréquemment isolé chez les diabétiques (16,9%) que les patients non diabétiques (6%) (p=0,039), la fréquence d'isolement d'autres agents pathogènes bactériens tels que Proteus spp, E. coli, Enterobacter spp, Pseudomonas aeruginosa, Staphylococcus aureus et Enterococcus spp n'étaient pas significativement différents entre les deux groupes de population (p>0,05). Les bactéries Gram-positives et Gram-négatives étaient très sensibles à l'imipénème chez les patients diabétiques et non diabétiques, mais les isolats des deux groupes d'étude présentaient une faible sensibilité à l'amoxicilline, à la nitrofurantoïne, au céfixime et à la céfuroxime. Conclusion: Bien que la fréquence globale d'isolement des agents pathogènes bactériens chez les patients diabétiques et non diabétiques n'était pas significativement différente, les femmes avaient un taux d'isolement des agents pathogènes plus élevé que les hommes, et les femmes diabétiques avaient une fréquence plus élevée d'infections polymicrobiennes par rapport aux femmes non diabétiques. et la population masculine. La haute résistance antimicrobienne des bactéries pathogènes isolées souligne la nécessité de tests de laboratoire de microbiologie clinique pour optimiser la gestion des infections urinaires chez les patients diabétiques.

Escherichia Coli Encoding Extended-Spectrum Beta-Lactamases Isolated from Diarrheic Patients in Minna, Nigeria

Escherichia coli remains one of the most isolated etiological agents of diarrhea, accounting for more than 1 million deaths and about 4% of the total global disability-adjusted life-years (DALYS) per year across all age groups according to the global disease burden. This study evaluated multidrug-resistant Escherichia coli encoding extended spectrum beta-lactamases isolated from diarrheic patients in Minna, Nigeria using standard microbiological methods. A prevalence of 37.7% of Diarrheagenic E. coli (DEC) was obtained from the stool samples evaluated. Within the environment sampled, age group 21 – 30 years had the highest E. coli isolation rate (27.8%) while age group ≥71years had the least E. coli isolation rate (2.6%). Females (64.9%) were the most affected compared to males (35.1%). The isolates were significantly resistant to most of the beta-lactams tested especially to 3rd generation cephalosporins [Cefotaxime (98.2%), cefuroxime (93%), ceftazidime (84.2%), Augmentin (70.2%), Amoxicillin (59.6%)]. Resistance to other classes of antibiotics was also observed in varying percentages. A high percentage (98.2% and 87.7%) of the diarrheagenic E. coli had a multiple resistant index (MARI) ≥ of 0.3. The isolates had varying patterns of resistance with 47.6% resistant to more than 5 classes of antibiotics tested and produced ESBL characteristics phenotypically. Molecular evaluation showed that 40%, 50%, and 90% of the isolates harbored the OXA, CTX-M and TEM genes respectively while 50% harbored VEB and PER genes. This study isolated E. coli from diarrheic patients with multidrug resistance profiles and encodes more than one type of ESBL gene within Minna, Nigeria.

Isolation, identification and toxinotyping of Clostridium perfringens isolated from broilers in Pakistan

Necrotic enteritis (NE) is one of the important enteric disease in the poultry industry worldwide, caused by C. perfringens type A. This study describes the isolation, identification, and toxinotyping of C. perfringens in necrotic enteritis affected broiler chicken in Pakistan. A total of 430 intestinal samples from dead carcasses and birds suspected of NE outbreak, in and around Faisalabad, Pakistan were collected from 36 broiler farms which yielded 87 alpha toxin gene (cpa) positive C. perfringens type A isolates. The birds having 4-5 weeks of age, clinical signs, and reared in open (conventional) sheds showed higher C. perfringens isolation rate. The study concluded netB negative C. perfringens type A as a causative agent for NE outbreaks in broiler birds in Faisalabad, Pakistan.

EMERGENCE OF MULTIDRUG RESISTANT NFGNB AS AN IMPORTANT CAUSE OF INFECTIONS

Background: The non fermenter gram negative bacilli (NFGNB) are primarily opportunistic pathogens and have emerged as an important cause of health care associated infections. The Methods: non fermenter organisms were isolated from various clinical specimens in a microbiology laboratory of a tertiary care hospital and were identied by the conventional bacteriological identication methods. Susceptibility testing was performed by methods as recommended by Clinical Laboratory Standard Institute (CLSI). Results: A total of 10,456 clinical specimens were processed, of which 442 (4.23%) non fermenter spp. were isolated. Most common infection caused by non fermenters was abscess. Maximum numbers of isolate (52.94%) were of Pseudomonas aeruginosa, followed by Acinetobacter baumannii (42.76%). Other species isolated were Acinetobacter calcoaceticus (1.81%), Pseudomonas putida (1.13%), Acinetobacter lwofi (0.68%), Pseudomonas stutzeri (0.45%), Stenotrophomonas maltophilia (0.23%). The isolation rate of non fermenters from ICU was much higher compared to general ward. High antibiotic resistance was noted for commonly used antibiotics like cephalosporins, quinolones, aminoglycosides. A total 58.60% of multi drug resistant (MDR) non fermenter isolates were obtained. The isolation rate of MDR isolates of non fermenters was more from ICU compared to general ward. Nosocomial infections res Interpretation and Conclusion: istant to most antimicrobials caused by non fermenter organisms have emerged, especially in ICU. Early identication and continued surveillance will help to prevent their spread in hospital environment.